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ONTOLOGY REPORT - ANNOTATIONS


Term:protein localization to site of double-strand break
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Accession:GO:1990166 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, a region of a chromosome at which a DNA double-strand break has occurred.
Synonyms:exact_synonym: protein localisation to site of double-strand break;   protein localization to double-strand break site;   protein localization to site of DSB



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protein localization to site of double-strand break term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brme1 break repair meiotic recombinase recruitment factor 1 involved_in ISO (PMID:32345962), (PMID:32460033), (PMID:32463460) RGD PMID:32345962 PMID:32460033 PMID:32463460 NCBI chr19:23,990,049...24,011,774
Ensembl chr19:23,990,045...24,011,850
JBrowse link
G Fam178b family with sequence similarity 178, member B involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:38,805,864...38,913,681
Ensembl chr 9:38,805,864...38,913,672
JBrowse link
G H2ax H2A.X variant histone involved_in ISO (PMID:12419185), (PMID:30952868) RGD PMID:12419185 PMID:30952868 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:35597237) RGD PMID:35597237 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607
JBrowse link
G Iffo1 intermediate filament family orphan 1 involved_in ISO (PMID:31548606) RGD PMID:31548606 NCBI chr 4:157,945,075...157,962,302
Ensembl chr 4:157,945,107...157,962,302
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:16377563), (PMID:18006705), (PMID:18411307), (PMID:18582474), (PMID:18583988), (PMID:18678890), (PMID:21482717), (PMID:30898438)
UniProt
RGD
PMID:16377563 PMID:18006705 PMID:18411307 PMID:18582474 PMID:18583988 More... GO_REF:0000024 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240
JBrowse link
G Nbn nibrin involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18411307), (PMID:18583988), (PMID:24534091), (PMID:27814491), (PMID:27889449)
Ensembl
UniProt
RGD
PMID:18411307 PMID:18583988 PMID:24534091 PMID:27814491 PMID:27889449 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 acts_upstream_of_or_within ISO (PMID:21211721) RGD PMID:21211721 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IEA
ISO
GO_REF:0000107
(PMID:24534091)
Ensembl
RGD
PMID:24534091 GO_REF:0000107 NCBI chr 2:31,764,260...31,794,542
Ensembl chr 2:31,764,261...31,794,072
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:37440612)
UniProt
RGD
PMID:37440612 GO_REF:0000024 NCBI chr 4:161,634,047...161,639,437
Ensembl chr 4:161,634,048...161,639,371
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:35597237) RGD PMID:35597237 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27568560) RGD PMID:27568560 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 involved_in ISO (PMID:25931565) RGD PMID:25931565 NCBI chr 2:6,767,015...6,874,428
Ensembl chr 2:6,767,015...6,867,149
JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 involved_in ISO
IBA
(PMID:25931565)
GO_REF:0000033
RGD
GO_Central
PMID:25931565 GO_REF:0000033 NCBI chr 1:243,782,786...243,845,418
Ensembl chr 1:243,782,246...243,845,250
JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in ISO (PMID:26811421), (PMID:37674080) RGD PMID:26811421 PMID:37674080 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:37696958)
Ensembl
RGD
PMID:37696958 GO_REF:0000107 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in ISO (PMID:31548606) RGD PMID:31548606 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 20413
    localization 5751
      macromolecule localization 3255
        cellular macromolecule localization 2760
          protein localization 2748
            protein localization to organelle 1115
              protein localization to chromosome 123
                protein localization to site of double-strand break 17
paths to the root