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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of postsynaptic density organization
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Accession:GO:1905874 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of postsynaptic density organization.
Synonyms:exact_synonym: regulation of PSD organization;   regulation of post synaptic density organization;   regulation of postsynaptic density organisation



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negative regulation of postsynaptic density organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfl1 cofilin 1 IMP RGD PMID:26169356 RGD:11074527 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929
JBrowse link
G Caskin1 CASK interacting protein 1 involved_in ISO (MGI:6479344|PMID:31727973) RGD PMID:31727973 MGI:6479344 NCBI chr10:13,512,684...13,533,380
Ensembl chr10:13,513,465...13,533,377
JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4441214|PMID:20395510) RGD PMID:20395510 MGI:4441214 NCBI chr19:19,608,763...19,612,572
Ensembl chr19:19,608,716...19,612,572
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IMP
IDA
PMID:10570482 SynGO PMID:10570482 PMID:10570482 RGD:8554363, RGD:8554363 NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO (MGI:6445062|PMID:32324534) RGD PMID:32324534 MGI:6445062 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISO (MGI:4441214|PMID:20395510) RGD PMID:20395510 MGI:4441214 NCBI chr 4:92,415,019...93,892,472
Ensembl chr 4:92,415,230...93,889,355
JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IEA
ISO
GO_REF:0000107
(MGI:5315316|PMID:22357843)
Ensembl
RGD
PMID:22357843 GO_REF:0000107 MGI:5315316 NCBI chr11:74,062,999...74,199,530
Ensembl chr11:74,070,304...74,199,530
JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in IMP
IDA
PMID:16630835 SynGO PMID:16630835 PMID:16630835 RGD:13702351, RGD:13702351 NCBI chr 1:83,742,442...83,761,450
Ensembl chr 1:83,682,964...83,761,449
JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in ISO
IBA
(MGI:4836132|PMID:20410109)
GO_REF:0000033
RGD
GO_Central
PMID:20410109 GO_REF:0000033 MGI:4836132 NCBI chr 1:201,888,569...201,891,861
Ensembl chr 1:201,888,569...201,891,861
JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in IMP
IBA
IDA
PMID:19252495
GO_REF:0000033
GO_Central PMID:19252495 PMID:19252495 GO_REF:0000033, RGD:13702321, RGD:13702321 NCBI chr 1:94,922,034...94,956,309
Ensembl chr 1:94,935,603...94,956,263
JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 involved_in IMP
IDA
PMID:19285470 SynGO PMID:19285470 PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr 4:109,701,815...109,718,924
Ensembl chr 4:109,701,815...109,717,184
JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in IDA
IMP
PMID:19285470 SynGO PMID:19285470 PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr18:26,817,816...26,822,864
Ensembl chr18:26,817,816...26,822,864
JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO (MGI:6445062|PMID:32324534) RGD PMID:32324534 MGI:6445062 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
JBrowse link
G Nrxn1 neurexin 1 involved_in ISO
IEA
(MGI:5294741|PMID:21410790)
GO_REF:0000107
RGD
Ensembl
PMID:21410790 GO_REF:0000107 MGI:5294741 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (MGI:6787980|PMID:34613779) RGD PMID:34613779 MGI:6787980 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (MGI:6787980|PMID:34613779), (MGI:6822542|PMID:23711981) RGD PMID:23711981 PMID:34613779 MGI:6787980 MGI:6822542 NCBI chr 4:124,869,655...125,214,862
Ensembl chr 4:124,869,552...125,214,824
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (MGI:5921909|PMID:28555636) RGD PMID:28555636 MGI:5921909 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D involved_in ISO
IDA
EXP
(MGI:5315316|PMID:22357843)
PMID:29024665
RGD PMID:22357843 PMID:29024665 PMID:29024665 MGI:5315316, RGD:13702141, RGD:13702141 NCBI chr 5:90,046,993...90,698,977
NCBI chr 5:91,122,354...91,641,754
Ensembl chr 5:90,048,966...92,369,396
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in IDA
EXP
IMP
ISO
IEA
PMID:21262467
(MGI:4887276|PMID:21262467)
GO_REF:0000107
RGD
Ensembl
PMID:21262467 PMID:21262467 PMID:21262467 PMID:21262467 GO_REF:0000107 MGI:4887276, RGD:13702219, RGD:13702219, RGD:13702219 NCBI chr 9:1,245,408...1,307,015
Ensembl chr 9:1,245,410...1,306,947
JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IMP
IDA
PMID:11502259 SynGO PMID:11502259 PMID:11502259 RGD:8554032, RGD:8554032 NCBI chr 6:101,839,351...102,118,408
Ensembl chr 6:101,839,404...102,116,950
JBrowse link
regulation of postsynaptic density protein 95 clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh2 cadherin 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:4457945|PMID:20534458)
Ensembl
RGD
PMID:20534458 GO_REF:0000107 MGI:4457945 NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IMP PMID:10570482 UniProt PMID:10570482 RGD:8554363 NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399
JBrowse link
G Dbn1 drebrin 1 IMP RGD PMID:12878700 RGD:10398728 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984
JBrowse link
G Slc30a1 solute carrier family 30 member 1 IMP RGD PMID:25319628 RGD:11057402 NCBI chr13:103,491,037...103,494,910
Ensembl chr13:103,491,037...103,494,910
JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IMP RGD PMID:24117785 RGD:8554267 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20295
    cellular process 18772
      regulation of cellular process 12687
        regulation of cellular component organization 2728
          regulation of organelle organization 1266
            regulation of postsynaptic density organization 25
              negative regulation of postsynaptic density organization + 1
              positive regulation of postsynaptic density organization + 0
              regulation of postsynaptic density assembly + 20
              regulation of postsynaptic density protein 95 clustering 5
Path 2
Term Annotations click to browse term
  biological_process 20295
    cellular process 18772
      cellular component organization or biogenesis 7219
        cellular component organization 6911
          cell junction organization 952
            synapse organization 653
              postsynapse organization 298
                postsynaptic specialization organization 75
                  postsynaptic density organization 62
                    regulation of postsynaptic density organization 25
                      negative regulation of postsynaptic density organization + 1
                      positive regulation of postsynaptic density organization + 0
                      regulation of postsynaptic density assembly + 20
                      regulation of postsynaptic density protein 95 clustering 5
paths to the root