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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of phospholipid metabolic process
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Accession:GO:1903725 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phospholipid metabolic process.
Synonyms:exact_synonym: regulation of phospholipid metabolism


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regulation of phospholipid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IDA RGD PMID:10657240 RGD:9684853 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
G Gnb3 G protein subunit beta 3 involved_in ISO UniProtKB:Q61011 (PMID:29206867) RGD PMID:29206867 NCBI chr 4:157,352,558...157,359,237
Ensembl chr 4:157,352,372...157,358,262
JBrowse link
negative regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (MGI:4460850|PMID:20018880) RGD PMID:20018880 MGI:4460850 NCBI chr 1:32,379,431...32,429,917
Ensembl chr 1:32,379,432...32,429,917
JBrowse link
negative regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 involved_in ISO (PMID:2302419) RGD PMID:2302419 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
negative regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfa platelet derived growth factor subunit A involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:2538439)
UniProt
Ensembl
RGD
PMID:2538439 GO_REF:0000024 GO_REF:0000107 NCBI chr12:17,734,141...17,756,186
Ensembl chr12:17,734,133...17,755,285
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:2538439)
UniProt
Ensembl
RGD
PMID:2538439 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
negative regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in IMP
IEA
ISO
PMID:24201375
GO_REF:0000107
(PMID:24201375)
Ensembl
RGD
PMID:24201375, PMID:24201375 GO_REF:0000107, RGD:14697729 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in ISO
IEA
IBA
(PMID:19523918)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:19523918, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:19,997,823...20,016,193
Ensembl chr16:19,999,112...20,016,190
JBrowse link
positive regulation of cardiolipin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stoml2 stomatin like 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:21746876)
UniProt
RGD
PMID:21746876 GO_REF:0000024 NCBI chr 5:58,472,561...58,476,158
Ensembl chr 5:58,472,550...58,476,251
JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase IMP RGD PMID:20348225 RGD:13432160 NCBI chr  X:156,421,006...156,429,461
Ensembl chr  X:156,421,009...156,428,593
JBrowse link
positive regulation of phosphatidic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA
(PMID:23767959)
GO_REF:0000107
RGD
Ensembl
PMID:23767959 GO_REF:0000107 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
positive regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long-chain family member 3 involved_in ISO (PMID:18003621) RGD PMID:18003621 NCBI chr 9:84,569,601...84,593,565
Ensembl chr 9:84,569,597...84,593,565
JBrowse link
G Capn2 calpain 2 IMP RGD PMID:9481489 RGD:13792658 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Rab38 RAB38, member RAS oncogene family IDA RGD PMID:28438206 RGD:13524861 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
positive regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htr2a 5-hydroxytryptamine receptor 2A involved_in ISO (PMID:19057895) RGD PMID:19057895 NCBI chr15:56,666,152...56,732,469
Ensembl chr15:56,666,012...56,735,382
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19057895)
UniProt
Ensembl
RGD
PMID:19057895 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014
JBrowse link
G Htr2c 5-hydroxytryptamine receptor 2C involved_in ISO (PMID:19057895) RGD PMID:19057895 NCBI chr  X:118,084,520...118,318,040
Ensembl chr  X:118,084,890...118,318,039
JBrowse link
positive regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf5 adhesion G protein-coupled receptor F5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5641462|PMID:23590306)
Ensembl
RGD
PMID:23590306 GO_REF:0000107 MGI:5641462 NCBI chr 9:20,091,121...20,195,706
Ensembl chr 9:20,091,099...20,195,566
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 involved_in ISO (PMID:30846317) RGD PMID:30846317 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IMP RGD PMID:19191103 RGD:126790485 NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
JBrowse link
G Pc pyruvate carboxylase involved_in IMP PMID:23357280 CACAO PMID:23357280 RGD:10047307 NCBI chr 1:219,759,157...219,859,854
Ensembl chr 1:219,759,183...219,859,848
JBrowse link
positive regulation of phospholipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc2 apolipoprotein C2 involved_in IBA
ISO
PMID:21873635
(PMID:10727238)
RGD PMID:10727238, PMID:21873635 RGD:13792537 NCBI chr 1:80,589,023...80,593,991
Ensembl chr 1:80,589,023...80,594,136
JBrowse link
positive regulation of sphingomyelin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:4947032|PMID:21177474)
UniProt
RGD
PMID:21177474 GO_REF:0000024 MGI:4947032 NCBI chr10:108,095,131...108,099,483
Ensembl chr10:108,095,131...108,099,483
JBrowse link
G Prkcd protein kinase C, delta involved_in IEA
ISO
GO_REF:0000107
(PMID:19279011)
Ensembl
RGD
PMID:19279011 GO_REF:0000107 NCBI chr16:6,655,131...6,675,746
Ensembl chr16:6,655,120...6,675,746
JBrowse link
regulation of cardiolipin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc19 DnaJ heat shock protein family (Hsp40) member C19 involved_in ISO (MGI:5604945|PMID:24856930) RGD PMID:24856930 MGI:5604945 NCBI chr 2:120,503,093...120,531,782
Ensembl chr 2:120,504,130...120,531,782
JBrowse link
G Phb2 prohibitin 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5604945|PMID:24856930)
UniProt
RGD
PMID:24856930 GO_REF:0000024 MGI:5604945 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367
JBrowse link
regulation of phosphatidate phosphatase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpin1 lipin 1 IDA RGD PMID:21715287 RGD:38599010 NCBI chr 6:41,796,214...41,905,149
Ensembl chr 6:41,799,749...41,870,046
JBrowse link
regulation of phosphatidic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin involved_in ISO MGI:5014325 (MGI:5904930|PMID:27806294) RGD PMID:27806294 MGI:5904930 NCBI chr 1:225,035,956...225,046,137
Ensembl chr 1:225,037,737...225,046,040
JBrowse link
regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp3 fatty acid binding protein 3 acts_upstream_of_or_within ISO MGI:101790 (MGI:3045488|PMID:15164767) RGD PMID:15164767 MGI:3045488 NCBI chr 5:148,528,854...148,535,597
Ensembl chr 5:148,528,725...148,535,565
JBrowse link
regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:3784112|PMID:18175806)
Ensembl
RGD
PMID:18175806 GO_REF:0000107 MGI:3784112 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link
regulation of phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:25817392), (PMID:31473345)
UniProt
RGD
PMID:25817392 PMID:31473345 GO_REF:0000024 NCBI chr10:13,723,365...13,780,558
Ensembl chr10:13,723,405...13,779,963
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (PMID:26005868)
(MGI:6196220|PMID:30074985)
RGD PMID:26005868 PMID:30074985 MGI:6196220 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
regulation of phosphatidylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
regulation of phosphatidylinositol dephosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrm5 cholinergic receptor, muscarinic 5 IMP RGD PMID:2540186 RGD:724743 NCBI chr 3:103,966,451...104,018,815
Ensembl chr 3:103,966,451...104,018,861
JBrowse link
G Mtmr1 myotubularin related protein 1 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr18:291,785...325,415
Ensembl chr18:291,780...325,377
JBrowse link
G Mtmr2 myotubularin related protein 2 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr 8:12,283,471...12,334,014
Ensembl chr 8:12,284,528...12,333,316
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO
IEA
(PMID:16787938)
GO_REF:0000107
RGD
Ensembl
PMID:16787938 GO_REF:0000107 NCBI chr14:84,701,559...84,820,487
Ensembl chr14:84,701,559...84,820,415
JBrowse link
G Mtmr4 myotubularin related protein 4 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr10:74,886,600...74,909,532
Ensembl chr10:74,886,985...74,909,533
JBrowse link
G Mtmr9 myotubularin related protein 9 involved_in ISO (PMID:22647598) RGD PMID:22647598 NCBI chr15:46,697,262...46,719,296
Ensembl chr15:46,693,383...46,719,252
JBrowse link
regulation of phosphatidylserine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:140,642,865...140,657,759
Ensembl chr 5:140,642,885...140,657,745
JBrowse link
regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 acts_upstream_of_or_within ISO (MGI:5605608|PMID:25218477) RGD PMID:25218477 MGI:5605608 NCBI chr 9:71,882,108...71,911,645
Ensembl chr 9:71,882,105...71,900,044
JBrowse link
G Scp2 sterol carrier protein 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6467919|PMID:11003606)
UniProt
RGD
PMID:11003606 GO_REF:0000024 MGI:6467919 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739
JBrowse link
regulation of phospholipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 acts_upstream_of_or_within ISO (MGI:5605608|PMID:25218477) RGD PMID:25218477 MGI:5605608 NCBI chr 9:71,882,108...71,911,645
Ensembl chr 9:71,882,105...71,900,044
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    metabolic process 11881
      primary metabolic process 10638
        regulation of primary metabolic process 5827
          regulation of lipid metabolic process 374
            regulation of phospholipid metabolic process 41
              negative regulation of phospholipid metabolic process + 6
              positive regulation of phospholipid metabolic process + 16
              regulation of cardiolipin metabolic process + 4
              regulation of phosphatidylcholine metabolic process + 10
              regulation of phosphatidylethanolamine metabolic process + 1
              regulation of phosphatidylinositol dephosphorylation 6
              regulation of phosphatidylserine metabolic process + 1
              regulation of phospholipid biosynthetic process + 21
              regulation of phospholipid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 19612
    biological regulation 13584
      regulation of biological process 12857
        regulation of metabolic process 6807
          regulation of cellular metabolic process 6016
            regulation of phosphorus metabolic process 1576
              regulation of phosphate metabolic process 1575
                regulation of phospholipid metabolic process 41
                  negative regulation of phospholipid metabolic process + 6
                  positive regulation of phospholipid metabolic process + 16
                  regulation of cardiolipin metabolic process + 4
                  regulation of phosphatidylcholine metabolic process + 10
                  regulation of phosphatidylethanolamine metabolic process + 1
                  regulation of phosphatidylinositol dephosphorylation 6
                  regulation of phosphatidylserine metabolic process + 1
                  regulation of phospholipid biosynthetic process + 21
                  regulation of phospholipid catabolic process + 7
paths to the root