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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of phospholipid metabolic process
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Accession:GO:1903725 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phospholipid metabolic process.
Synonyms:exact_synonym: regulation of phospholipid metabolism



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regulation of phospholipid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IDA RGD PMID:10657240 RGD:9684853 NCBI chr10:43,997,983...44,014,543
Ensembl chr10:43,997,986...44,014,434
JBrowse link
G Gnb3 G protein subunit beta 3 involved_in ISO UniProtKB:Q61011 (PMID:29206867) RGD PMID:29206867 NCBI chr 4:157,639,468...157,645,171
Ensembl chr 4:157,639,469...157,645,173
JBrowse link
negative regulation of phosphatidate phosphatase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpin1 lipin 1 IMP RGD PMID:21715287 RGD:38599010 NCBI chr 6:39,309,198...39,417,034
Ensembl chr 6:39,312,748...39,417,097
JBrowse link
negative regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (MGI:4460850|PMID:20018880) RGD PMID:20018880 MGI:4460850 NCBI chr 1:29,766,070...29,816,401
Ensembl chr 1:29,766,071...29,816,401
JBrowse link
negative regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 involved_in ISO (PMID:2302419) RGD PMID:2302419 NCBI chr 1:79,347,057...79,350,340
Ensembl chr 1:79,346,136...79,350,375
JBrowse link
negative regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdgfa platelet derived growth factor subunit A involved_in ISS
ISO
GO_REF:0000024
(PMID:2538439)
UniProt
RGD
PMID:2538439 GO_REF:0000024 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:2538439)
UniProt
Ensembl
RGD
PMID:2538439 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
negative regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in IMP
IEA
ISO
PMID:24201375
GO_REF:0000107
(PMID:24201375)
Ensembl
RGD
PMID:24201375 PMID:24201375 GO_REF:0000107, RGD:14697729 NCBI chr 3:8,244,515...8,264,545
Ensembl chr 3:8,244,639...8,264,537
JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in ISO
IBA
(PMID:19523918)
PMID:21873635
RGD PMID:19523918 PMID:21873635 RGD:13792537 NCBI chr16:18,278,984...18,300,173
Ensembl chr16:18,278,984...18,296,063
JBrowse link
positive regulation of cardiolipin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stoml2 stomatin like 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:21746876)
UniProt
RGD
PMID:21746876 GO_REF:0000024 NCBI chr 5:57,256,227...57,259,824
Ensembl chr 5:57,256,220...57,259,920
JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase IMP RGD PMID:20348225 RGD:13432160 NCBI chr  X:152,065,539...152,076,178
Ensembl chr  X:152,065,609...152,074,001
JBrowse link
positive regulation of phosphatidic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA
(PMID:23767959)
GO_REF:0000107
RGD
Ensembl
PMID:23767959 GO_REF:0000107 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047
JBrowse link
positive regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long-chain family member 3 involved_in ISO (PMID:18003621) RGD PMID:18003621 NCBI chr 9:80,140,996...80,164,636
Ensembl chr 9:80,115,112...80,164,627
JBrowse link
G Capn2 calpain 2 IMP RGD PMID:9481489 RGD:13792658 NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969
JBrowse link
G Rab38 RAB38, member RAS oncogene family IDA RGD PMID:28438206 RGD:13524861 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
positive regulation of phosphatidylinositol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htr2a 5-hydroxytryptamine receptor 2A involved_in ISO (PMID:19057895) RGD PMID:19057895 NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19057895)
UniProt
Ensembl
RGD
PMID:19057895 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,735,793...86,756,640
Ensembl chr 9:86,742,102...86,755,108
JBrowse link
G Htr2c 5-hydroxytryptamine receptor 2C involved_in ISO (PMID:19057895) RGD PMID:19057895 NCBI chr  X:110,640,777...110,870,288
Ensembl chr  X:110,641,153...110,870,287
JBrowse link
positive regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf5 adhesion G protein-coupled receptor F5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5641462|PMID:23590306)
Ensembl
RGD
PMID:23590306 GO_REF:0000107 MGI:5641462 NCBI chr 9:17,517,596...17,624,107
Ensembl chr 9:17,520,009...17,623,968
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 involved_in ISO (PMID:30846317) RGD PMID:30846317 NCBI chr 3:106,536,009...106,571,255
Ensembl chr 3:106,536,004...106,571,251
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IMP RGD PMID:19191103 RGD:126790485 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595
JBrowse link
G Pc pyruvate carboxylase involved_in IMP PMID:23357280 CACAO PMID:23357280 RGD:10047307 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380
JBrowse link
positive regulation of phospholipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc2 apolipoprotein C2 involved_in IBA
ISO
PMID:21873635
(PMID:10727238)
RGD PMID:10727238 PMID:21873635 RGD:13792537 NCBI chr 1:79,329,429...79,334,397
Ensembl chr 1:79,329,428...79,334,476
JBrowse link
positive regulation of sphingomyelin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:4947032|PMID:21177474)
UniProt
RGD
PMID:21177474 GO_REF:0000024 MGI:4947032 NCBI chr10:104,242,223...104,246,589
Ensembl chr10:104,242,223...104,246,589
JBrowse link
G Prkcd protein kinase C, delta involved_in ISO (PMID:19279011) RGD PMID:19279011 NCBI chr16:5,769,226...5,807,214
Ensembl chr16:5,769,215...5,799,352
JBrowse link
regulation of cardiolipin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc19 DnaJ heat shock protein family (Hsp40) member C19 involved_in ISO (MGI:5604945|PMID:24856930) RGD PMID:24856930 MGI:5604945 NCBI chr 2:116,923,272...116,945,312
Ensembl chr 2:116,923,272...116,945,264
JBrowse link
G Phb2 prohibitin 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5604945|PMID:24856930)
UniProt
Ensembl
RGD
PMID:24856930 GO_REF:0000024 GO_REF:0000107 MGI:5604945 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
regulation of phosphatidic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin involved_in ISO MGI:5014325 (MGI:5904930|PMID:27806294) RGD PMID:27806294 MGI:5904930 NCBI chr 1:205,731,814...205,743,430
Ensembl chr 1:205,733,872...205,743,421
JBrowse link
regulation of phosphatidylcholine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp3 fatty acid binding protein 3 acts_upstream_of_or_within ISO MGI:101790 (MGI:3045488|PMID:15164767) RGD PMID:15164767 MGI:3045488 NCBI chr 5:142,651,962...142,658,707
Ensembl chr 5:142,651,956...142,658,718
JBrowse link
regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor involved_in ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr 8:20,270,020...20,292,981
Ensembl chr 8:20,270,041...20,294,580
JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO (MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:3784112 NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647
JBrowse link
regulation of phosphatidylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca3 ATP binding cassette subfamily A member 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:25817392), (PMID:31473345)
UniProt
RGD
PMID:25817392 PMID:31473345 GO_REF:0000024 NCBI chr10:13,382,439...13,439,748
Ensembl chr10:13,382,540...13,439,745
JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (PMID:26005868)
(MGI:6196220|PMID:30074985)
RGD PMID:26005868 PMID:30074985 MGI:6196220 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
JBrowse link
regulation of phosphatidylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
JBrowse link
regulation of phosphatidylinositol dephosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrm5 cholinergic receptor, muscarinic 5 IMP RGD PMID:2540186 RGD:724743 NCBI chr 3:99,284,846...99,337,252
Ensembl chr 3:99,284,846...99,337,252
JBrowse link
G Mtmr1 myotubularin related protein 1 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr18:215,031...248,541
Ensembl chr18:215,089...248,541
JBrowse link
G Mtmr2 myotubularin related protein 2 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr 8:10,617,993...10,670,724
Ensembl chr 8:10,617,993...10,668,172
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO
IEA
(PMID:16787938)
GO_REF:0000107
RGD
Ensembl
PMID:16787938 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
JBrowse link
G Mtmr4 myotubularin related protein 4 involved_in ISO (PMID:16787938) RGD PMID:16787938 NCBI chr10:72,393,411...72,416,342
Ensembl chr10:72,392,551...72,416,342
JBrowse link
G Mtmr9 myotubularin related protein 9 involved_in ISO (PMID:22647598) RGD PMID:22647598 NCBI chr15:37,769,161...37,791,195
Ensembl chr15:37,769,078...37,791,244
JBrowse link
regulation of phosphatidylserine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd2a major facilitator superfamily domain containing 2A acts_upstream_of ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
JBrowse link
regulation of phospholipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 acts_upstream_of_or_within ISO (MGI:5605608|PMID:25218477) RGD PMID:25218477 MGI:5605608 NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708
JBrowse link
G Scp2 sterol carrier protein 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6467919|PMID:11003606)
UniProt
RGD
PMID:11003606 GO_REF:0000024 MGI:6467919 NCBI chr 5:122,806,949...122,881,259
Ensembl chr 5:122,776,549...122,881,287
JBrowse link
regulation of phospholipid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 acts_upstream_of_or_within ISO (MGI:5605608|PMID:25218477) RGD PMID:25218477 MGI:5605608 NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      primary metabolic process 10525
        regulation of primary metabolic process 5817
          regulation of lipid metabolic process 382
            regulation of phospholipid metabolic process 41
              negative regulation of phospholipid metabolic process + 7
              positive regulation of phospholipid metabolic process + 16
              regulation of cardiolipin metabolic process + 4
              regulation of phosphatidylcholine metabolic process + 10
              regulation of phosphatidylethanolamine metabolic process + 1
              regulation of phosphatidylinositol dephosphorylation 6
              regulation of phosphatidylserine metabolic process + 1
              regulation of phospholipid biosynthetic process + 21
              regulation of phospholipid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 19512
    biological regulation 13616
      regulation of biological process 12887
        regulation of metabolic process 6831
          regulation of cellular metabolic process 5984
            regulation of phosphorus metabolic process 1478
              regulation of phosphate metabolic process 1477
                regulation of phospholipid metabolic process 41
                  negative regulation of phospholipid metabolic process + 7
                  positive regulation of phospholipid metabolic process + 16
                  regulation of cardiolipin metabolic process + 4
                  regulation of phosphatidylcholine metabolic process + 10
                  regulation of phosphatidylethanolamine metabolic process + 1
                  regulation of phosphatidylinositol dephosphorylation 6
                  regulation of phosphatidylserine metabolic process + 1
                  regulation of phospholipid biosynthetic process + 21
                  regulation of phospholipid catabolic process + 7
paths to the root