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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of cytoplasmic transport
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Accession:GO:1903649 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of cytoplasmic transport.
Synonyms:narrow_synonym: regulation of cytoplasmic streaming

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negative regulation of early endosome to late endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snx12 sorting nexin 12 involved_in ISO (PMID:22719997) RGD PMID:22719997 NCBI chr  X:70,989,822...71,127,330
Ensembl chr  X:70,989,822...71,127,278 		JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:47,225,382...47,263,390
Ensembl chr20:47,225,619...47,263,390 		JBrowse link
negative regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip1 ADP-ribosylation factor interacting protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25789876)		 Ensembl
RGD		 PMID:25789876 GO_REF:0000107 NCBI chr 2:183,503,250...183,582,798
Ensembl chr 2:183,504,330...183,582,553 		JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule-associated protein 2 involved_in IMP PMID:28426968 ARUK-UCL PMID:28426968, PMID:28426968 RGD:13514087, RGD:13514087 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:22127389 RGD:12790715 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233 		JBrowse link
G Trim46 tripartite motif-containing 46 involved_in IMP PMID:28426968 ARUK-UCL PMID:28426968, PMID:28426968 RGD:13514087, RGD:13514087 NCBI chr 2:188,548,608...188,561,617
Ensembl chr 2:188,548,644...188,561,360 		JBrowse link
positive regulation of early endosome to late endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab2 DAB adaptor protein 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270 		JBrowse link
G Ezr ezrin involved_in ISO UniProtKB:P26038|UniProtKB:P35241 (PMID:21148287) RGD PMID:21148287 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412 		JBrowse link
G Msn moesin involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P15311|UniProtKB:P35241 (PMID:21148287)		 Ensembl
RGD		 PMID:21148287 GO_REF:0000107 NCBI chr  X:65,226,834...65,294,192
Ensembl chr  X:65,226,748...65,295,810 		JBrowse link
G Mtmr2 myotubularin related protein 2 involved_in IMP PMID:20410104 BHF-UCL PMID:20410104, PMID:20410104 RGD:8553482, RGD:8553482 NCBI chr 8:12,283,471...12,334,014
Ensembl chr 8:12,284,528...12,333,316 		JBrowse link
G Ptpn23 protein tyrosine phosphatase, non-receptor type 23 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21724833)		 Ensembl
RGD		 PMID:21724833 GO_REF:0000107 NCBI chr 8:118,628,777...118,651,238
Ensembl chr 8:118,628,777...118,651,238 		JBrowse link
G Rab21 RAB21, member RAS oncogene family involved_in ISO (PMID:15561770) RGD PMID:15561770 NCBI chr 7:58,261,985...58,286,770
Ensembl chr 7:58,261,992...58,286,770 		JBrowse link
G Rdx radixin involved_in ISO UniProtKB:P15311|UniProtKB:P26038 (PMID:21148287) RGD PMID:21148287 NCBI chr 8:56,570,728...56,612,851
Ensembl chr 8:56,585,396...56,610,612 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) RGD PMID:21148287 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295 		JBrowse link
positive regulation of early endosome to recycling endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:22621900) RGD PMID:22621900 NCBI chr 8:46,228,077...46,287,171 JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:22127389 RGD:12790715 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233 		JBrowse link
positive regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eipr1 EARP complex and GARP complex interacting protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:27440922)		 UniProt
RGD		 PMID:27440922 GO_REF:0000024 NCBI chr 6:48,021,771...48,135,241
Ensembl chr 6:48,021,771...48,135,241 		JBrowse link
regulation of dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk8 mitogen-activated protein kinase 8 involved_in IDA PMID:29166604 UniProt PMID:29166604, PMID:29166604 RGD:15023486, RGD:15023486 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347 		JBrowse link
regulation of early endosome to late endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423 		JBrowse link
G Dennd10 DENN domain containing 10 involved_in ISO
IBA		 (PMID:30771381)
PMID:21873635		 RGD PMID:30771381, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:282,188,080...282,211,588
Ensembl chr 1:282,188,110...282,210,580 		JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in ISO (PMID:18256511) RGD PMID:18256511 NCBI chr 8:112,697,907...112,830,445
Ensembl chr 8:112,698,348...112,807,598 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in TAS PMID:19565474 UniProt PMID:19565474, PMID:19565474 RGD:8553538, RGD:8553538 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 involved_in TAS PMID:19565474 UniProt PMID:19565474, PMID:19565474 RGD:8553538, RGD:8553538 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 involved_in TAS PMID:19565474 UniProt PMID:19565474, PMID:19565474 RGD:8553538, RGD:8553538 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 involved_in TAS PMID:19565474 UniProt PMID:19565474, PMID:19565474 RGD:8553538, RGD:8553538 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IMP RGD PMID:18768694 RGD:13504749 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:21724833) RGD PMID:21724833 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642 		JBrowse link
regulation of early endosome to recycling endosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in ISO (PMID:18256511) RGD PMID:18256511 NCBI chr 8:112,697,907...112,830,445
Ensembl chr 8:112,698,348...112,807,598 		JBrowse link
regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp9a ATPase phospholipid transporting 9A (putative) involved_in ISO
IEA		 (PMID:30213940)
GO_REF:0000107		 RGD
Ensembl		 PMID:30213940 GO_REF:0000107 NCBI chr 3:165,405,588...165,511,104
Ensembl chr 3:165,412,803...165,477,771 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IBA		 UniProtKB:Q7KVL7 (PMID:23395371)
PMID:21873635		 RGD PMID:23395371, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IMP PMID:23395371 ParkinsonsUK-UCL PMID:23395371, PMID:23395371 RGD:8553873, RGD:8553873 NCBI chr13:48,644,575...48,650,229
Ensembl chr13:48,644,604...48,650,220 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:26365382) RGD PMID:26365382 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    cellular process 18900
      cellular localization 3001
        intracellular transport 1524
          cytosolic transport 168
            regulation of cytoplasmic transport 30
              modulation by virus of host cytoplasmic transport 0
              negative regulation of cytoplasmic transport + 3
              positive regulation of cytoplasmic transport + 13
              regulation of dense core granule transport + 4
              regulation of early endosome to late endosome transport + 19
              regulation of early endosome to recycling endosome transport + 2
              regulation of retrograde transport, endosome to Golgi + 6
Path 2
Term Annotations click to browse term
  biological_process 20082
    cellular process 18900
      cellular localization 3001
        establishment of localization in cell 2193
          intracellular transport 1524
            regulation of intracellular transport 375
              regulation of cytoplasmic transport 30
                modulation by virus of host cytoplasmic transport 0
                negative regulation of cytoplasmic transport + 3
                positive regulation of cytoplasmic transport + 13
                regulation of dense core granule transport + 4
                regulation of early endosome to late endosome transport + 19
                regulation of early endosome to recycling endosome transport + 2
                regulation of retrograde transport, endosome to Golgi + 6
paths to the root