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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of tumor necrosis factor superfamily cytokine production
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Accession:GO:1903555 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of tumor necrosis factor superfamily cytokine production.
Synonyms:exact_synonym: regulation of TNFSF cytokine production
 related_synonym: regulation of TNF superfamily production



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negative regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180086 (PMID:11168643)
Ensembl
RGD
PMID:11168643 GO_REF:0000107 NCBI chr 8:28,939,984...28,946,639
Ensembl chr 8:20,663,985...20,667,929
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
ISS
(PMID:10961870)
GO_REF:0000024
RGD
UniProt
PMID:10961870 GO_REF:0000024 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564
JBrowse link
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:11096136 RGD:8548521 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Akap8 A-kinase anchoring protein 8 involved_in ISO (PMID:19531803) RGD PMID:19531803 NCBI chr 7:11,966,769...11,983,056
Ensembl chr 7:11,316,228...11,332,399
JBrowse link
G Arg2 arginase 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:27074721)
(PMID:28614294)
Ensembl
RGD
PMID:27074721 PMID:28614294 GO_REF:0000107 NCBI chr 6:103,669,001...103,694,375
Ensembl chr 6:97,936,002...97,961,378
JBrowse link
G Arrb2 arrestin, beta 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:16378096)
Ensembl
RGD
PMID:16378096 GO_REF:0000107 NCBI chr10:55,645,539...55,653,485
Ensembl chr10:55,146,818...55,154,850
JBrowse link
G Axl Axl receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:107670 (PMID:16831897) RGD PMID:16831897 NCBI chr 1:90,392,864...90,424,123
Ensembl chr 1:81,265,088...81,296,265
JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO (PMID:15465827) RGD PMID:15465827 NCBI chr 1:88,599,321...88,613,555
Ensembl chr 1:79,471,369...79,485,607
JBrowse link
G Bpi bactericidal/permeability-increasing protein involved_in ISO
IBA
(PMID:8409400)
GO_REF:0000033
RGD
GO_Central
PMID:8409400 GO_REF:0000033 NCBI chr 3:167,329,513...167,356,217
Ensembl chr 3:146,909,629...146,936,221
JBrowse link
G C5ar2 complement C5a receptor 2 involved_in ISO
ISS
(PMID:16204243)
GO_REF:0000024
RGD
UniProt
PMID:16204243 GO_REF:0000024 NCBI chr 1:86,058,557...86,073,583
Ensembl chr 1:76,930,383...76,959,517
JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:9,042,125...9,047,807
Ensembl chr 7:8,391,397...8,396,829
JBrowse link
G Cd24 CD24 molecule involved_in ISO (PMID:19264983) RGD PMID:19264983 NCBI chr20:48,655,549...48,661,786
Ensembl chr20:47,073,512...47,079,662
JBrowse link
G Cd33 CD33 molecule involved_in ISO (PMID:15597323) RGD PMID:15597323 NCBI chr 1:103,071,985...103,086,687
Ensembl chr 1:93,930,971...93,950,149
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit involved_in
acts_upstream_of_or_within
IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
MGI:1888407 (PMID:12508119), (PMID:16785311)
Ensembl
UniProt
RGD
PMID:12508119 PMID:16785311 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:126,123,425...126,249,181
Ensembl chr 1:116,714,711...116,837,240
JBrowse link
G Cidea cell death-inducing DFFA-like effector a involved_in ISO (PMID:15919794) RGD PMID:15919794 NCBI chr18:63,164,817...63,190,384
Ensembl chr18:60,894,874...60,920,481
JBrowse link
G Clec4a C-type lectin domain family 4, member A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:158,026,138...158,119,904
Ensembl chr 4:156,414,688...156,432,402
JBrowse link
G Clec4a3 C-type lectin domain family 4, member A3 involved_in ISO (PMID:18258799) RGD PMID:18258799 NCBI chr 4:157,885,899...157,896,728
Ensembl chr 4:156,214,718...156,224,817
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 involved_in ISO
IEA
(PMID:10652441)
GO_REF:0000107
RGD
Ensembl
PMID:10652441 GO_REF:0000107 NCBI chr19:10,233,326...10,244,856
Ensembl chr19:10,227,340...10,236,833
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Elf4 E74 like ETS transcription factor 4 involved_in ISO (PMID:35266071) RGD PMID:35266071 NCBI chr  X:132,465,290...132,508,175
Ensembl chr  X:127,590,650...127,630,200
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 IMP RGD PMID:19204184 RGD:9685562 NCBI chr 5:166,606,841...166,620,124
Ensembl chr 5:161,323,998...161,337,282
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823 (PMID:20457904) RGD PMID:20457904 NCBI chr12:12,660,035...12,735,584
Ensembl chr12:7,623,930...7,699,474
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO MGI:3696705 (PMID:16275384) RGD PMID:16275384 NCBI chr  X:17,580,380...17,601,181
Ensembl chr  X:14,908,494...14,923,838
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:15548538)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15548538 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:118,812,287...118,865,813
Ensembl chr 2:116,884,248...116,937,590
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
ISS
(PMID:19657094), (PMID:20103767)
GO_REF:0000024
RGD
UniProt
PMID:19657094 PMID:20103767 GO_REF:0000024 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Gdnf glial cell derived neurotrophic factor IMP RGD PMID:32428552 RGD:405878062 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209
JBrowse link
G Ghrl ghrelin and obestatin prepropeptide involved_in IDA
ISS
ISO
GO_REF:0000024
(PMID:15232612)
UniProt
RGD
PMID:15232612 PMID:19620309 GO_REF:0000024, RGD:12905041 NCBI chr 4:148,421,315...148,431,128
Ensembl chr 4:146,865,712...146,869,621
JBrowse link
G Ghsr growth hormone secretagogue receptor involved_in IMP
ISS
ISO
GO_REF:0000024
(PMID:15232612)
UniProt
RGD
PMID:15232612 PMID:17911350 GO_REF:0000024, RGD:12907501 NCBI chr 2:112,196,158...112,201,666
Ensembl chr 2:110,268,489...110,271,865
JBrowse link
G Gpnmb glycoprotein nmb involved_in ISO (PMID:17475886) RGD PMID:17475886 NCBI chr 4:79,341,128...79,362,366
Ensembl chr 4:78,010,197...78,049,367
JBrowse link
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within ISO MGI:5708707 (PMID:25348153) RGD PMID:25348153 NCBI chr15:98,997,427...99,001,177
Ensembl chr15:98,997,259...99,001,470
JBrowse link
G Gstp1 glutathione S-transferase pi 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:16023107), (PMID:18962899)
(PMID:18962899)
BHF-UCL
RGD
PMID:16023107 PMID:18962899 GO_REF:0000024 NCBI chr 1:210,767,237...210,770,242
Ensembl chr 1:201,321,672...201,340,226
JBrowse link
G H19 H19 imprinted maternally expressed transcript IMP RGD PMID:27796346 RGD:156430325 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO UniProtKB:O00182 (PMID:25578313) RGD PMID:25578313 NCBI chr10:31,383,801...31,415,334
Ensembl chr10:30,882,606...30,909,137
JBrowse link
G Hdac3 histone deacetylase 3 IMP RGD PMID:22772764 RGD:9590127 NCBI chr18:30,021,847...30,041,061
Ensembl chr18:29,770,636...29,793,856
JBrowse link
G Hsf1 heat shock transcription factor 1 acts_upstream_of_or_within ISO MGI:2155444 (PMID:10545106) RGD PMID:10545106 NCBI chr 7:110,076,710...110,103,665
Ensembl chr 7:108,196,056...108,223,011
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
RNAcentral:URS000034B6F5_9606 (PMID:27277332)
GO_REF:0000107
RGD
Ensembl
PMID:27277332 GO_REF:0000107 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within IDA
ISO
MGI:1857199 (PMID:12452830) RGD PMID:12452830 PMID:17017555 RGD:1598631 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il27ra interleukin 27 receptor subunit alpha involved_in ISO UniProtKB:P35951 (PMID:22927332) RGD PMID:22927332 NCBI chr19:41,014,730...41,026,740
Ensembl chr19:24,109,972...24,121,938
JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:29061364) RGD PMID:29061364 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in ISO (PMID:29802199) RGD PMID:29802199 NCBI chr20:5,811,721...5,878,082
Ensembl chr20:5,809,936...5,876,012
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 involved_in ISO (PMID:15728517)
(PMID:12150927)
RGD PMID:12150927 PMID:15728517 NCBI chr 7:57,538,522...57,600,166
Ensembl chr 7:55,653,962...55,713,121
JBrowse link
G Lbp lipopolysaccharide binding protein involved_in ISO
IEA
(PMID:11739189)
GO_REF:0000107
RGD
Ensembl
PMID:11739189 GO_REF:0000107 NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Lgals9 galectin 9 involved_in ISO UniProtKB:Q8TDQ0 (PMID:25578313) RGD PMID:25578313 NCBI chr10:64,405,044...64,428,249
Ensembl chr10:63,907,018...63,930,045
JBrowse link
G Lilrb4 leukocyte immunoglobulin like receptor B4 involved_in ISO (PMID:19833736) RGD PMID:19833736 NCBI chr 1:78,847,685...78,853,294
Ensembl chr 1:69,805,250...69,810,660
JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO (PMID:10233018) RGD PMID:10233018 NCBI chr19:68,360,950...68,363,877
Ensembl chr19:51,453,239...51,454,192
JBrowse link
G Mir101-2 microRNA 101-2 acts_upstream_of ISO (PMID:26022377) RGD PMID:26022377 NCBI chr 1:226,860,371...226,860,467
Ensembl chr 1:226,860,371...226,860,467
JBrowse link
G Mir101a microRNA 101a acts_upstream_of ISO (PMID:26022377) RGD PMID:26022377 NCBI chr 5:115,966,332...115,966,406
Ensembl chr 5:115,966,328...115,966,410
JBrowse link
G Mir105 microRNA 105 acts_upstream_of ISO (PMID:19509287) RGD PMID:19509287 NCBI chr  X:155,480,841...155,480,913
Ensembl chr  X:150,438,529...150,438,601
JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 8:50,850,036...50,850,122
Ensembl chr 8:41,952,966...41,953,052
JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr11:29,732,572...29,732,659 JBrowse link
G Mir130a microRNA 130a involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 3:90,229,228...90,229,315
Ensembl chr 3:69,822,542...69,822,629
JBrowse link
G Mir140 microRNA 140 acts_upstream_of ISO
IMP
(PMID:30321456) RGD PMID:30321456 PMID:32519270 PMID:31376096 RGD:329347827, RGD:329337378 NCBI chr19:52,375,293...52,375,391
Ensembl chr19:35,465,577...35,465,675
JBrowse link
G Mir154 microRNA 154 IMP RGD PMID:31746418 RGD:152995474 NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030
JBrowse link
G Mir181a2 microRNA 181a-2 involved_in ISO (PMID:23516523) RGD PMID:23516523 NCBI chr 3:43,025,563...43,025,679
Ensembl chr 3:22,615,845...22,615,961
JBrowse link
G Mir185 microRNA 185 acts_upstream_of ISO (PMID:24803541) RGD PMID:24803541 NCBI chr11:96,169,028...96,169,107
Ensembl chr11:82,664,716...82,664,795
JBrowse link
G Mir204 microRNA 204 acts_upstream_of ISO (PMID:29441883) RGD PMID:29441883 NCBI chr 1:229,743,461...229,743,570
Ensembl chr 1:220,316,931...220,317,040
JBrowse link
G Mir488 microRNA 488 involved_in ISO (PMID:28915828) RGD PMID:28915828 NCBI chr13:70,683,064...70,683,142
Ensembl chr13:70,683,064...70,683,142
JBrowse link
G Mir494 microRNA 494 IDA RGD PMID:30783439 RGD:150527846 NCBI chr 6:134,550,115...134,550,197
Ensembl chr 6:128,728,709...128,728,793
JBrowse link
G Mir708 microRNA 708 acts_upstream_of ISO (PMID:31599428) RGD PMID:31599428 NCBI chr 1:160,011,158...160,011,245
Ensembl chr 1:150,599,876...150,599,963
JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:31886314) RGD PMID:31886314 NCBI chr  X:24,460,648...24,460,755
Ensembl chr  X:20,981,235...20,981,342
JBrowse link
G Nfkbil1 NFKB inhibitor like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20829348)
UniProt
RGD
PMID:20829348 GO_REF:0000024 NCBI chr20:3,595,319...3,610,295
Ensembl chr20:3,590,642...3,605,616
JBrowse link
G Nlrc3 NLR family, CARD domain containing 3 involved_in ISO (PMID:22863753) RGD PMID:22863753 NCBI chr10:12,055,809...12,093,449
Ensembl chr10:11,551,356...11,584,398
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:19139201) RGD PMID:19139201 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA
(PMID:21242261)
(PMID:18972444)
GO_REF:0000107
RGD
Ensembl
PMID:18972444 PMID:21242261 GO_REF:0000107 NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047
JBrowse link
G Orm1 orosomucoid 1 involved_in ISO (PMID:23973664) RGD PMID:23973664 NCBI chr 5:81,788,509...81,791,661
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Pomc proopiomelanocortin involved_in ISO
IEA
(PMID:10233018)
GO_REF:0000107
RGD
Ensembl
PMID:10233018 GO_REF:0000107 NCBI chr 6:32,659,137...32,665,175
Ensembl chr 6:26,939,837...26,945,664
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:15560120 RGD:10043380 NCBI chr 2:56,061,699...56,074,594
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 involved_in ISO (PMID:23991106) RGD PMID:23991106 NCBI chr 2:194,055,165...194,103,209
Ensembl chr 2:191,366,808...191,414,779
JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P97797 (PMID:17954568)
Ensembl
RGD
PMID:17954568 GO_REF:0000107 NCBI chr 4:159,212,320...159,237,069
Ensembl chr 4:157,526,035...157,550,984
JBrowse link
G Rad21 RAD21 cohesin complex component IMP RGD PMID:36538854 RGD:243065265 NCBI chr 7:85,177,715...85,204,657
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:18416830) RGD PMID:18416830 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Selenos selenoprotein S involved_in IEA
ISO
GO_REF:0000107
(PMID:16227999)
Ensembl
RGD
PMID:16227999 GO_REF:0000107 NCBI chr 1:129,070,240...129,080,007
Ensembl chr 1:119,659,751...119,669,833
JBrowse link
G Sirpa signal-regulatory protein alpha involved_in ISO (PMID:17954568) RGD PMID:17954568 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098
JBrowse link
G Sirt1 sirtuin 1 IMP RGD PMID:19299582 RGD:9585771 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 involved_in ISO (PMID:16317102) RGD PMID:16317102 NCBI chr13:86,802,708...86,837,890
Ensembl chr13:84,270,316...84,305,497
JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23303671), (PMID:25063865), (PMID:28686317)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23303671 PMID:25063865 PMID:28686317 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO (PMID:14568985) RGD PMID:14568985 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Tlr4 toll-like receptor 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:20051628)
Ensembl
RGD
PMID:20051628 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tlr6 toll-like receptor 6 involved_in ISO ComplexPortal:CPX-1134 (PMID:22198949) RGD PMID:22198949 NCBI chr14:43,715,809...43,727,019
Ensembl chr14:43,362,164...43,375,685
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (PMID:21088135) RGD PMID:21088135 NCBI chr 1:15,528,921...15,543,993
Ensembl chr 1:13,709,206...13,725,282
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:28592261) RGD PMID:28592261 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
G Trim27 tripartite motif-containing 27 involved_in ISO (PMID:22128329) RGD PMID:22128329 NCBI chr17:48,233,999...48,246,348
Ensembl chr17:43,538,285...43,550,643
JBrowse link
G Tspo translocator protein IDA RGD PMID:14678758 RGD:2317158 NCBI chr 7:116,600,214...116,610,461
Ensembl chr 7:114,720,188...114,730,450
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:104685 (PMID:16831897) RGD PMID:16831897 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412|MGI:98872 (PMID:16831897) RGD PMID:16831897 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO (PMID:24691993) RGD PMID:24691993 NCBI chr20:28,824,493...28,850,175
Ensembl chr20:28,281,596...28,303,878
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
GO_REF:0000024
(PMID:21616078)
(PMID:18178554)
UniProt
RGD
PMID:18178554 PMID:21616078 GO_REF:0000024 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
negative regulation of tumor necrosis factor superfamily cytokine production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule involved_in ISO (PMID:24187568) RGD PMID:24187568 NCBI chr 1:236,526,215...236,549,956
Ensembl chr 1:227,116,649...227,134,450
JBrowse link
positive regulation of lymphotoxin A production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il17f interleukin 17F involved_in ISO
IEA
(PMID:11591732)
GO_REF:0000107
RGD
Ensembl
PMID:11591732 GO_REF:0000107 NCBI chr 9:30,686,532...30,697,918
Ensembl chr 9:23,190,100...23,201,482
JBrowse link
positive regulation of TRAIL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:4,872,720...4,876,425 JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 involved_in ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:162,406,387...162,451,620
Ensembl chr 5:157,123,185...157,168,421
JBrowse link
positive regulation of tumor necrosis factor (ligand) superfamily member 11 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in ISO (PMID:20683884) RGD PMID:20683884 NCBI chr 1:204,206,206...204,218,988
Ensembl chr 1:194,770,060...194,788,801
JBrowse link
G Ccn1 cellular communication network factor 1 IMP RGD PMID:27653023 RGD:150429754 NCBI chr 2:237,222,730...237,225,689
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:16220542) RGD PMID:16220542 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
positive regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:18854840 RGD:2325137 NCBI chr 1:105,734,992...105,816,272
Ensembl chr 1:96,598,647...96,679,510
JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO
IEA
(PMID:12777399)
GO_REF:0000107
RGD
Ensembl
PMID:12777399 GO_REF:0000107 NCBI chr 6:46,601,583...46,663,690
Ensembl chr 6:40,872,856...40,920,639
JBrowse link
G Ager advanced glycosylation end product-specific receptor involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P05067 (PMID:22406537)
Ensembl
RGD
PMID:22406537 GO_REF:0000107 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078
JBrowse link
G Akap12 A-kinase anchoring protein 12 IMP RGD PMID:19937403 PMID:17873284 RGD:14348968, RGD:14348969 NCBI chr 1:43,135,515...43,225,245
Ensembl chr 1:40,730,123...40,819,886
JBrowse link
G App amyloid beta precursor protein involved_in ISO
IEA
UniProtKB:P49768|UniProtKB:Q62151|UniProtKB:Q9QUN7 (PMID:22198949), (PMID:22406537), (PMID:29061364)
GO_REF:0000107
UniProtKB:Q62151 (PMID:12808450)
RGD
Ensembl
PMID:12808450 PMID:22198949 PMID:22406537 PMID:29061364 GO_REF:0000107 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Arfgef2 ARF guanine nucleotide exchange factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:17276987)
UniProt
RGD
PMID:17276987 GO_REF:0000024 NCBI chr 3:175,966,575...176,052,715
Ensembl chr 3:155,547,538...155,630,856
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21887730)
UniProt
Ensembl
RGD
PMID:21887730 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,358,909...176,416,178
Ensembl chr 2:174,062,976...174,118,355
JBrowse link
G Arid5a AT-rich interaction domain 5A involved_in ISO (PMID:27671645) RGD PMID:27671645 NCBI chr 9:46,030,513...46,058,729
Ensembl chr 9:38,534,590...38,547,597
JBrowse link
G Btk Bruton tyrosine kinase IMP RGD PMID:28352114 RGD:151665126 NCBI chr  X:102,016,070...102,055,448
Ensembl chr  X:97,722,802...97,761,853
JBrowse link
G C1qtnf4 C1q and TNF related 4 involved_in ISO (PMID:21658842) RGD PMID:21658842 NCBI chr 3:76,854,368...76,872,991
Ensembl chr 3:76,857,735...76,874,139
JBrowse link
G Camp cathelicidin antimicrobial peptide IDA RGD PMID:24990383 RGD:442380204 NCBI chr 8:118,720,184...118,721,998
Ensembl chr 8:109,841,729...109,843,543
JBrowse link
G Card9 caspase recruitment domain family, member 9 acts_upstream_of_or_within ISO MGI:3698412 (PMID:17187069) RGD PMID:17187069 NCBI chr 3:29,569,907...29,578,402
Ensembl chr 3:9,171,815...9,180,237
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:61,759,220...61,761,164
Ensembl chr 5:56,963,364...56,965,308
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IMP RGD PMID:24826069 RGD:8661667 NCBI chr10:67,503,077...67,504,875
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P22893 (PMID:21784977)
UniProt
RGD
PMID:21784977 GO_REF:0000024 NCBI chr10:68,948,889...68,950,439
Ensembl chr10:68,451,388...68,452,938
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IMP RGD PMID:10679105 RGD:68880 NCBI chr10:68,963,893...68,965,728
Ensembl chr10:68,452,052...68,468,231
JBrowse link
G Ccn1 cellular communication network factor 1 IMP RGD PMID:27653023 RGD:150429754 NCBI chr 2:237,222,730...237,225,689
Ensembl chr 2:234,562,408...234,565,484
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 involved_in IMP
ISO
ISS
(PMID:18832716)
GO_REF:0000024
RGD
BHF-UCL
PMID:18832716 PMID:24826069 GO_REF:0000024, RGD:8661667 NCBI chr 8:132,611,883...132,619,106
Ensembl chr 8:123,734,430...123,742,100
JBrowse link
G Ccr5 C-C motif chemokine receptor 5 IMP RGD PMID:16790532 RGD:1598562 NCBI chr 8:132,629,097...132,660,980
Ensembl chr 8:123,752,325...123,759,260
JBrowse link
G Cd14 CD14 molecule involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:8612135)
(PMID:12594207)
UniProt
RGD
PMID:8612135 PMID:12594207 GO_REF:0000024 NCBI chr18:28,609,558...28,611,409
Ensembl chr18:28,335,340...28,337,261
JBrowse link
G Cd2 Cd2 molecule involved_in ISO (PMID:19109405) RGD PMID:19109405 NCBI chr 2:191,399,510...191,412,659
Ensembl chr 2:188,710,900...188,724,026
JBrowse link
G Cd36 CD36 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2447190|MGI:3573941 (PMID:15690042), (PMID:16061696)
Ensembl
RGD
PMID:15690042 PMID:16061696 GO_REF:0000107 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903
JBrowse link
G Cd84 CD84 molecule involved_in ISO (PMID:20628063) RGD PMID:20628063 NCBI chr13:86,859,979...86,899,984
Ensembl chr13:84,327,553...84,362,076
JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539
JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within
ISO (PMID:19358895)
(PMID:19136564)
(PMID:12719478), (PMID:14707091)
RGD PMID:12719478 PMID:14707091 PMID:19136564 PMID:19358895 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897
JBrowse link
G Clu clusterin involved_in ISO
ISS
IEA
(PMID:15857407)
GO_REF:0000024
GO_REF:0000107
RGD
Alzheimers_University_of_Toronto
Ensembl
PMID:15857407 GO_REF:0000024 GO_REF:0000107 NCBI chr15:44,336,619...44,375,861
Ensembl chr15:40,174,617...40,200,315
JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:18434589 RGD:151665814 NCBI chr18:56,834,152...56,860,804
Ensembl chr18:54,546,659...54,590,415
JBrowse link
G Cyba cytochrome b-245 alpha chain involved_in ISO
IEA
(PMID:22423966)
GO_REF:0000107
RGD
Ensembl
PMID:22423966 GO_REF:0000107 NCBI chr19:67,396,143...67,404,214
Ensembl chr19:50,487,597...50,495,721
JBrowse link
G Cybb cytochrome b-245 beta chain IMP RGD PMID:19318376 RGD:11040691 NCBI chr  X:16,030,596...16,065,065
Ensembl chr  X:13,359,430...13,392,586
JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:25840911 PMID:29656108 RGD:12904676, RGD:150520032 NCBI chr 5:116,295,691...116,323,219
Ensembl chr 5:111,178,703...111,244,794
JBrowse link
G Ddt D-dopachrome tautomerase involved_in ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:12,883,025...12,886,121
Ensembl chr20:12,884,243...12,888,482
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:20696886), (PMID:21957149) RGD PMID:20696886 PMID:21957149 NCBI chr13:68,152,813...68,189,580
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (PMID:24803541) RGD PMID:24803541 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Fadd Fas associated via death domain involved_in ISO (PMID:16127453) RGD PMID:16127453 NCBI chr 1:209,169,245...209,175,423
Ensembl chr 1:199,739,994...199,745,653
JBrowse link
G Fcer1g Fc epsilon receptor Ig acts_upstream_of_or_within ISO MGI:1857165|MGI:2384004 (PMID:10229794), (PMID:14764707) RGD PMID:10229794 PMID:14764707 NCBI chr13:86,181,908...86,186,766
Ensembl chr13:83,649,449...83,671,443
JBrowse link
G Fcgr1a Fc gamma receptor 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994
JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (PMID:10229794) RGD PMID:10229794 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967
JBrowse link
G Fcgr2b Fc gamma receptor 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778
JBrowse link
G Fcgr3a Fc gamma receptor 3A involved_in ISO (PMID:10728755) RGD PMID:10728755 NCBI chr13:85,782,636...85,792,656
Ensembl chr13:83,249,872...83,259,921
JBrowse link
G Frmd8 FERM domain containing 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:29897333), (PMID:29897336)
UniProt
RGD
PMID:29897333 PMID:29897336 GO_REF:0000024 NCBI chr 1:212,572,534...212,593,181
Ensembl chr 1:203,143,218...203,163,870
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO
GO_REF:0000107
ComplexPortal:CPX-1134|UniProtKB:P22725 (PMID:21857966)
Ensembl
RGD
PMID:21857966 GO_REF:0000107 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO (PMID:18006747) RGD PMID:18006747 NCBI chr10:31,383,801...31,415,334
Ensembl chr10:30,882,606...30,909,137
JBrowse link
G Hdac1 histone deacetylase 1 IMP RGD PMID:22772764 RGD:9590127 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 IMP RGD PMID:22772764 RGD:9590127 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
ISO
IDA
(PMID:12765338)
PMID:10952726
(PMID:19264983), (PMID:19890330)
RGD PMID:12765338 PMID:19264983 PMID:19890330 PMID:22514737 PMID:10952726 RGD:10402175, RGD:10054071 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Hspb1 heat shock protein family B (small) member 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:12385642)
Ensembl
RGD
PMID:12385642 GO_REF:0000107 NCBI chr12:26,430,640...26,432,301
Ensembl chr12:20,794,028...20,795,743
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IMP RGD PMID:23447644 RGD:10402845 NCBI chr 9:64,073,610...64,084,332
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 3:67,635,924...67,683,968
Ensembl chr 3:47,227,364...47,275,456
JBrowse link
G Ifng interferon gamma involved_in ISO ComplexPortal:CPX-1062|UniProtKB:P05067|UniProtKB:P15261|UniProtKB:P49768 (PMID:17255335), (PMID:1845803), (PMID:2502420), (PMID:26227742), (PMID:29061364), (PMID:7715705) RGD PMID:1845803 PMID:2502420 PMID:7715705 PMID:17255335 PMID:26227742 More... NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Ifngr1 interferon gamma receptor 1 involved_in ISO UniProtKB:P01579 (PMID:17255335) RGD PMID:17255335 NCBI chr 1:16,152,811...16,171,439
Ensembl chr 1:14,333,187...14,351,785
JBrowse link
G Il12b interleukin 12B involved_in ISO (PMID:16751425) RGD PMID:16751425 NCBI chr10:29,390,300...29,405,194
Ensembl chr10:28,893,008...28,902,903
JBrowse link
G Il17a interleukin 17A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:29734196)
Ensembl
RGD
PMID:29734196 GO_REF:0000107 NCBI chr 9:30,640,844...30,644,331
Ensembl chr 9:23,144,402...23,147,889
JBrowse link
G Il18 interleukin 18 IMP RGD PMID:17623049 RGD:4889480 NCBI chr 8:59,802,072...59,829,275
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Il1a interleukin 1 alpha acts_upstream_of IMP PMID:31172560 ARUK-UCL PMID:31172560 RGD:15023467 NCBI chr 3:136,979,804...136,990,236
Ensembl chr 3:116,526,604...116,536,822
JBrowse link
G Il23a interleukin 23 subunit alpha involved_in ISO (PMID:16751425) RGD PMID:16751425 NCBI chr 7:1,306,320...1,308,434
Ensembl chr 7:721,809...723,923
JBrowse link
G Il33 interleukin 33 involved_in
acts_upstream_of
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:26936882)
Ensembl
RGD
PMID:26936882 GO_REF:0000107 NCBI chr 1:237,115,478...237,149,897
Ensembl chr 1:227,721,435...227,736,373
JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:31886314) RGD PMID:31886314 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:22727192)
Ensembl
RGD
PMID:22727192 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Jak2 Janus kinase 2 involved_in
acts_upstream_of
ISO UniProtKB:P01580 (PMID:26227742)
(PMID:12426001)
RGD PMID:12426001 PMID:26227742 NCBI chr 1:236,408,905...236,468,769
Ensembl chr 1:226,995,334...227,054,189
JBrowse link
G Lbp lipopolysaccharide binding protein involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
(PMID:12932360), (PMID:24380872), (PMID:9338787)
MGI:1857975 (PMID:12055258)
GO_REF:0000107
(PMID:12594207)
(PMID:24120359), (PMID:8409400)
UniProt
RGD
Ensembl
PMID:8409400 PMID:9338787 PMID:12055258 PMID:12594207 PMID:12932360 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Lep leptin involved_in ISS
ISO
GO_REF:0000024
(PMID:9438411)
UniProt
RGD
PMID:9438411 GO_REF:0000024 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:20209097)
(PMID:25158758)
RGD PMID:20209097 PMID:25158758 NCBI chr10:64,405,044...64,428,249
Ensembl chr10:63,907,018...63,930,045
JBrowse link
G Lilra5 leukocyte immunoglobulin like receptor A5 involved_in ISO (PMID:12393390), (PMID:19009525) RGD PMID:12393390 PMID:19009525 NCBI chr 1:69,973,292...69,978,750
Ensembl chr 1:69,973,292...70,001,718
JBrowse link
G Lpl lipoprotein lipase involved_in IEA
ISO
GO_REF:0000107
RNAcentral:URS00005C83FD_10090 (PMID:22963823)
Ensembl
RGD
PMID:22963823 GO_REF:0000107 NCBI chr16:25,596,205...25,621,928
Ensembl chr16:20,829,465...20,855,249
JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 acts_upstream_of_or_within ISO (PMID:19265123) RGD PMID:19265123 NCBI chr 8:119,969,908...120,071,270
Ensembl chr 8:111,091,503...111,193,255
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:22302802 RGD:13462052 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO (PMID:24380872) RGD PMID:24380872 NCBI chr 5:7,365,536...7,397,864
Ensembl chr 5:2,582,254...2,612,386
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO (PMID:24020373) RGD PMID:24020373 NCBI chr13:45,066,027...45,112,326
Ensembl chr13:42,513,762...42,560,457
JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in ISS
ISO
GO_REF:0000024
(PMID:16127453), (PMID:21957149)
UniProt
RGD
PMID:16127453 PMID:21957149 GO_REF:0000024 NCBI chr 3:138,904,673...138,919,129
Ensembl chr 3:118,451,743...118,466,094
JBrowse link
G Mif macrophage migration inhibitory factor involved_in ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:12,767,138...12,791,222
Ensembl chr20:12,790,902...12,799,504
Ensembl chr 4:12,790,902...12,799,504
JBrowse link
G Mir144 microRNA 144 involved_in ISO (PMID:24733347) RGD PMID:24733347 NCBI chr10:63,459,397...63,459,479
Ensembl chr10:62,961,348...62,961,430
JBrowse link
G Mir206 microRNA 206 involved_in ISO (PMID:27277332) RGD PMID:27277332 NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332
JBrowse link
G Mir23a microRNA 23a IMP RGD PMID:33403590 RGD:155882539 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071
JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:20164187) RGD PMID:20164187 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529
JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISO
IMP
GO_REF:0000107
(PMID:25049354)
Ensembl
RGD
PMID:25049354 PMID:25049354 GO_REF:0000107, RGD:13792525 NCBI chr 8:13,008,873...13,018,729
Ensembl chr 8:4,724,029...4,733,520
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor acts_upstream_of_or_within ISO MGI:2147032|MGI:2385681 (PMID:10607756), (PMID:11067888), (PMID:12719478), (PMID:12872135) RGD PMID:10607756 PMID:11067888 PMID:12719478 PMID:12872135 NCBI chr 8:127,952,161...127,956,230
Ensembl chr 8:119,074,437...119,079,415
JBrowse link
G Ncl nucleolin IMP RGD PMID:21309751 RGD:9686449 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 acts_upstream_of_or_within ISO (PMID:17242187) RGD PMID:17242187 NCBI chr15:33,256,912...33,284,522
Ensembl chr15:29,305,535...29,314,610
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within IMP
ISO
MGI:2429397|MGI:2674231 (PMID:18261938) RGD PMID:18261938 PMID:22450316 RGD:9831170 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within
ISO (PMID:21040358)
MGI:1341839|MGI:2680581|MGI:3529594 (PMID:15220916), (PMID:18261938)
(PMID:17187069)
RGD PMID:15220916 PMID:17187069 PMID:18261938 PMID:21040358 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Oas1a 2'-5' oligoadenylate synthetase 1A involved_in ISO (PMID:30822544) RGD PMID:30822544 NCBI chr12:41,330,423...41,341,130
Ensembl chr12:35,669,801...35,680,517
JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 involved_in ISO
IEA
(PMID:30822544)
GO_REF:0000107
RGD
Ensembl
PMID:30822544 GO_REF:0000107 NCBI chr12:41,464,568...41,492,036
Ensembl chr12:35,806,759...35,829,371
JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in ISO
IEA
(PMID:30822544)
GO_REF:0000107
RGD
Ensembl
PMID:30822544 GO_REF:0000107 NCBI chr12:41,439,645...41,463,392
Ensembl chr12:35,779,022...35,802,781
JBrowse link
G Orm1 orosomucoid 1 involved_in ISO (PMID:8774350) RGD PMID:8774350 NCBI chr 5:81,788,509...81,791,661
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Pf4 platelet factor 4 involved_in ISO (PMID:10666185) RGD PMID:10666185 NCBI chr14:17,582,477...17,583,392
Ensembl chr14:17,298,308...17,299,365
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:17242187)
Ensembl
RGD
PMID:17242187 GO_REF:0000107 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:32,882,032...32,963,631
JBrowse link
G Plcg2 phospholipase C, gamma 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19136564), (PMID:22041900)
Ensembl
RGD
PMID:19136564 PMID:22041900 GO_REF:0000107 NCBI chr19:62,456,196...62,592,684
Ensembl chr19:45,547,416...45,683,930
JBrowse link
G Psen1 presenilin 1 involved_in ISO UniProtKB:P05067 (PMID:29061364) RGD PMID:29061364 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Ptafr platelet-activating factor receptor IMP RGD PMID:2545780 RGD:10043183 NCBI chr 5:150,049,322...150,079,060
Ensembl chr 5:144,765,976...144,795,251
JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:30783439 RGD:150527846 NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P97797 (PMID:17954568)
Ensembl
RGD
PMID:17954568 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:35,383,144...35,424,925
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO UniProtKB:Q64455 (PMID:18249142) RGD PMID:18249142 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J involved_in ISO UniProtKB:P06800 (PMID:18249142) RGD PMID:18249142 NCBI chr 3:96,861,785...97,017,702
Ensembl chr 3:76,405,927...76,562,260
JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO (PMID:16982856), (PMID:21487011) RGD PMID:16982856 PMID:21487011 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955
JBrowse link
G Rig1 RNA sensor RIG-1 involved_in ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 5:60,117,398...60,165,995
Ensembl chr 5:55,321,235...55,370,819
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:16127453) RGD PMID:16127453 NCBI chr17:31,044,983...31,077,167
Ensembl chr17:30,839,650...30,871,824
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within
involved_in
ISO MGI:2660793 (PMID:11894098), (PMID:18261938)
(PMID:21887730)
RGD PMID:11894098 PMID:18261938 PMID:21887730 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:29,631,570...29,662,657
JBrowse link
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:4,872,720...4,876,425 JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within ISO MGI:3716944 (PMID:16227612) RGD PMID:16227612 NCBI chr  X:132,204,717...132,219,421
Ensembl chr  X:127,326,859...127,341,519
JBrowse link
G Selenok selenoprotein K involved_in ISO (PMID:21220695) RGD PMID:21220695 NCBI chr16:5,158,601...5,167,183
Ensembl chr16:5,152,066...5,159,188
JBrowse link
G Setd4 SET domain containing 4 involved_in ISO (PMID:31376731) RGD PMID:31376731 NCBI chr11:46,315,340...46,344,024
Ensembl chr11:32,838,063...32,858,243
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:17346996) RGD PMID:17346996 NCBI chr 1:105,317,332...105,324,985
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Spn sialophorin acts_upstream_of_or_within ISO (PMID:10899905)
MGI:1857246 (PMID:10899905)
RGD PMID:10899905 NCBI chr 1:191,177,449...191,190,115
Ensembl chr 1:181,746,429...181,759,628
JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within ISO MGI:3026870 (PMID:14691481) RGD PMID:14691481 NCBI chr14:81,713,070...81,742,510
Ensembl chr14:77,511,901...77,517,996
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA
RNAcentral:URS00004E0808_9606|UniProtKB:P05231 (PMID:31886314)
GO_REF:0000107
RGD
Ensembl
PMID:31886314 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISO
IEA
(PMID:19358895)
GO_REF:0000107
RGD
Ensembl
PMID:19358895 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:32141990) RGD PMID:32141990 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO (PMID:18726995) RGD PMID:18726995 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 acts_upstream_of_or_within ISO MGI:108005|MGI:2679794|MGI:3029019 (PMID:12855817), (PMID:12872135) RGD PMID:12855817 PMID:12872135 NCBI chr 9:1,189,717...1,197,730
Ensembl chr 9:1,102,366...1,123,147
JBrowse link
G Tirap TIR domain containing adaptor protein involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16301656), (PMID:19509286)
(PMID:12447442), (PMID:16301656)
MGI:3573942 (PMID:15690042)
GO_REF:0000033
RGD
GO_Central
PMID:12447442 PMID:15690042 PMID:16301656 PMID:19509286 GO_REF:0000033 NCBI chr 8:41,789,557...41,805,903
Ensembl chr 8:33,531,725...33,547,432
JBrowse link
G Tlr1 toll-like receptor 1 involved_in ISO (PMID:12077222) RGD PMID:12077222 NCBI chr14:43,737,761...43,750,389
Ensembl chr14:43,384,932...43,397,125
JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within
involved_in
ISO MGI:2178675|MGI:2674036 (PMID:10549626), (PMID:11067888), (PMID:12719478), (PMID:15690042), (PMID:16239543)
ComplexPortal:CPX-1134|UniProtKB:P05067|UniProtKB:P49768 (PMID:15356140), (PMID:22198949)
RGD PMID:10549626 PMID:11067888 PMID:12719478 PMID:15356140 PMID:15690042 More... NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Tlr3 toll-like receptor 3 acts_upstream_of_or_within
involved_in
ISO MGI:2653138 (PMID:17008311)
(PMID:15356140)
RGD PMID:15356140 PMID:17008311 NCBI chr16:53,554,916...53,572,321
Ensembl chr16:46,822,039...46,836,545
JBrowse link
G Tlr4 toll-like receptor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15356140)
MGI:1857718|MGI:1860755|MGI:1860885 (PMID:10549626), (PMID:10607756), (PMID:10623794), (PMID:14691481), (PMID:18261938)
(PMID:17951129), (PMID:30321456)
Ensembl
RGD
PMID:10549626 PMID:10607756 PMID:10623794 PMID:14691481 PMID:15356140 More... GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (PMID:15356140), (PMID:18931679) RGD PMID:15356140 PMID:18931679 NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Tmem106a transmembrane protein 106A involved_in ISS
ISO
GO_REF:0000024
(PMID:26215746)
UniProt
RGD
PMID:26215746 GO_REF:0000024 NCBI chr10:87,007,144...87,016,161
Ensembl chr10:86,506,936...86,515,892
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A IMP RGD PMID:20967881 RGD:5130945 NCBI chr 4:159,837,119...159,849,817
Ensembl chr 4:158,150,820...158,163,591
JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 involved_in ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:162,406,387...162,451,620
Ensembl chr 5:157,123,185...157,168,421
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:20007935) RGD PMID:20007935 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp involved_in ISO (PMID:25690660) RGD PMID:25690660 NCBI chr 1:94,800,372...94,804,307
Ensembl chr 1:85,672,994...85,676,848
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
ComplexPortal:CPX-1134|UniProtKB:Q9EQD0 (PMID:21857966)
Ensembl
RGD
PMID:21857966 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 involved_in ISO (PMID:23776228) RGD PMID:23776228 NCBI chr11:70,558,010...71,297,039
Ensembl chr11:57,072,880...57,510,210
JBrowse link
regulation of TRAIL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase NOT|involved_in ISO (PMID:21785459) RGD PMID:21785459 NCBI chr 5:166,636,551...166,659,825
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:20060382)
Ensembl
RGD
PMID:20060382 GO_REF:0000107 NCBI chr 7:75,415,959...75,668,696
Ensembl chr 7:73,531,486...73,784,067
JBrowse link
G Card9 caspase recruitment domain family, member 9 acts_upstream_of_or_within ISO MGI:3663486 (PMID:16862125) RGD PMID:16862125 NCBI chr 3:29,569,907...29,578,402
Ensembl chr 3:9,171,815...9,180,237
JBrowse link
G Cd300ld Cd300 molecule-like family member D acts_upstream_of_or_within ISO (PMID:17543387) RGD PMID:17543387 NCBI chr10:100,082,957...100,115,853
Ensembl chr10:100,083,490...100,115,821
JBrowse link
G Cd47 Cd47 molecule involved_in ISO (PMID:11509594) RGD PMID:11509594 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425
JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 involved_in ISO UniProtKB:P05067 (PMID:23499256) RGD PMID:23499256 NCBI chr 8:128,661,294...128,679,048
Ensembl chr 8:119,782,595...119,800,014
JBrowse link
G Fcgr2a Fc gamma receptor 2A IMP RGD PMID:22184119 RGD:11041001 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967
JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (PMID:18799727) RGD PMID:18799727 NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
JBrowse link
G Kcnn4 potassium calcium-activated channel subfamily N member 4 IMP RGD PMID:25715999 RGD:401794570 NCBI chr 1:79,956,380...79,974,354
Ensembl chr 1:79,959,322...79,974,340
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:20345905) RGD PMID:20345905 NCBI chr 8:119,878,344...119,901,189
Ensembl chr 8:110,999,948...111,022,795
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:15014438)
(PMID:10559880)
RGD PMID:10559880 PMID:15014438 NCBI chr13:45,066,027...45,112,326
Ensembl chr13:42,513,762...42,560,457
JBrowse link
G Mir361 microRNA 361 involved_in ISO (PMID:28444107) RGD PMID:28444107 NCBI chr  X:78,246,206...78,246,275
Ensembl chr  X:78,246,206...78,246,275
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor acts_upstream_of_or_within ISO MGI:4421295 (PMID:25084278) RGD PMID:25084278 NCBI chr 8:127,952,161...127,956,230
Ensembl chr 8:119,074,437...119,079,415
JBrowse link
G Sirpa signal-regulatory protein alpha involved_in IMP
ISO
PMID:16055727
UniProtKB:Q08722 (PMID:11509594)
RGD PMID:11509594 PMID:16055727 RGD:13792550 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098
JBrowse link
G Tbc1d23 TBC1 domain family, member 23 acts_upstream_of_or_within ISO MGI:3857844 (PMID:22312129) RGD PMID:22312129 NCBI chr11:56,772,476...56,830,625
Ensembl chr11:43,303,355...43,361,503
JBrowse link
G Tlr10 toll-like receptor 10 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr14:43,758,940...43,768,352
Ensembl chr14:43,406,217...43,413,917
JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:24199847 RGD:12910488 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tlr5 toll-like receptor 5 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr13:97,166,430...97,190,642
Ensembl chr13:94,634,801...94,657,738
JBrowse link
G Tnfsf18 TNF superfamily member 18 NOT|involved_in ISO (PMID:24107315) RGD PMID:24107315 NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:24218451) RGD PMID:24218451 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 acts_upstream_of_or_within ISO MGI:109298 (PMID:24020373) RGD PMID:24020373 NCBI chr 5:47,422,476...47,441,476
Ensembl chr 5:47,422,587...47,441,461
JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
GO_REF:0000024
(PMID:15014438)
UniProt
RGD
PMID:15014438 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:83,669,084...83,671,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    multicellular organismal process 9002
      regulation of multicellular organismal process 3345
        regulation of cytokine production 920
          regulation of tumor necrosis factor superfamily cytokine production 220
            negative regulation of tumor necrosis factor superfamily cytokine production + 88
            positive regulation of tumor necrosis factor superfamily cytokine production + 124
            regulation of TRAIL production + 3
            regulation of lymphotoxin A production + 1
            regulation of tumor necrosis factor (ligand) superfamily member 11 production + 3
            regulation of tumor necrosis factor production + 216
Path 2
Term Annotations click to browse term
  biological_process 20553
    biological regulation 13833
      regulation of biological process 13387
        regulation of cellular process 13023
          regulation of metabolic process 6832
            regulation of biosynthetic process 5630
              regulation of macromolecule biosynthetic process 5425
                regulation of gene expression 5311
                  regulation of cytokine production 920
                    regulation of tumor necrosis factor superfamily cytokine production 220
                      negative regulation of tumor necrosis factor superfamily cytokine production + 88
                      positive regulation of tumor necrosis factor superfamily cytokine production + 124
                      regulation of TRAIL production + 3
                      regulation of lymphotoxin A production + 1
                      regulation of tumor necrosis factor (ligand) superfamily member 11 production + 3
                      regulation of tumor necrosis factor production + 216
paths to the root