ONTOLOGY REPORT - ANNOTATIONS
Term: regulation of amyloid precursor protein catabolic process
Accession: GO:1902991
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Definition: Any process that modulates the frequency, rate or extent of amyloid precursor protein catabolic process.
Comment: An example of this is human FKBP1A/12 (UniProt symbol P62942) in PMID:24499793 (inferred from direct assay).
Synonyms: exact_synonym: regulation of APP catabolic process; regulation of APP catabolism; regulation of amyloid precursor protein breakdown; regulation of amyloid precursor protein catabolism; regulation of amyloid precursor protein degradation
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Abca7
ATP binding cassette subfamily A member 7
involved_in
ISO IEA ISS
(PMID:26260791) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:26260791
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
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Apoe
apolipoprotein E
involved_in
ISO
(PMID:28164773)
RGD
PMID:28164773
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
involved_in
ISO
UniProtKB:P05067 (PMID:20708605)
RGD
PMID:20708605
NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240
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Fkbp1a
FKBP prolyl isomerase 1A
involved_in
ISO
UniProtKB:P05067 (PMID:24499793)
RGD
PMID:24499793
NCBI chr 3:140,040,359...140,060,107
Ensembl chr 3:140,040,278...140,060,743
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Unc13a
unc-13 homolog A
involved_in
ISO
(MGI:5795815|PMID:23070049)
RGD
PMID:23070049
MGI:5795815
NCBI chr16:18,333,910...18,381,813
Ensembl chr16:18,336,229...18,381,872
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Flot2
flotillin 2
involved_in
ISO IEA
(PMID:24612608) GO_REF:0000107
RGD Ensembl
PMID:24612608
GO_REF:0000107
NCBI chr10:62,926,047...62,947,759
Ensembl chr10:62,920,665...62,947,756
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Mir15b
microRNA 15b
acts_upstream_of
ISO
(PMID:29961672)
RGD
PMID:29961672
NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297
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Mir29a
microRNA 29a
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr 4:59,650,608...59,650,695
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Mir29b1
microRNA 29b-1
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr 4:59,650,987...59,651,067
Ensembl chr 4:59,650,986...59,651,067
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Mir29b2
microRNA 29b-2
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456
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Prnp
prion protein
involved_in
ISO
UniProtKB:P12023 (MGI:3714552|PMID:17573534)
RGD
PMID:17573534
MGI:3714552
NCBI chr 3:119,186,073...119,201,513
Ensembl chr 3:119,177,485...119,203,937
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Rock1
Rho-associated coiled-coil containing protein kinase 1
involved_in
ISO
(PMID:24305806), (PMID:27853422)
RGD
PMID:24305806 PMID:27853422
NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571
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Sorl1
sortilin related receptor 1
involved_in
ISO
(PMID:16407538), (PMID:17855360), (PMID:21989385) (MGI:3801250|PMID:18362153)
RGD
PMID:16407538 PMID:17855360 PMID:18362153 PMID:21989385
MGI:3801250
NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513
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Abca7
ATP binding cassette subfamily A member 7
involved_in
ISS ISO
GO_REF:0000024 (MGI:5487687|PMID:23467355), (MGI:5553242|PMID:18429932), (MGI:5774886|PMID:27030769)
Alzheimers_University_of_Toronto RGD
PMID:18429932 PMID:23467355 PMID:27030769
GO_REF:0000024 MGI:5487687 MGI:5553242 MGI:5774886
NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
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Apoe
apolipoprotein E
involved_in
ISO IEA
(PMID:24154541) (PMID:24259049) GO_REF:0000107
RGD Ensembl
PMID:24154541 PMID:24259049
GO_REF:0000107
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Bin1
bridging integrator 1
involved_in
ISO IEA
(PMID:27179792) (MGI:5811968|PMID:27179792) GO_REF:0000107
RGD Ensembl
PMID:27179792
GO_REF:0000107 MGI:5811968
NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
involved_in
ISO
UniProtKB:P05067 (PMID:20708605)
RGD
PMID:20708605
NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240
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Clu
clusterin
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:12047389), (PMID:17412999)
Alzheimers_University_of_Toronto Ensembl RGD
PMID:12047389 PMID:17412999
GO_REF:0000024 GO_REF:0000107
NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
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Gga3
golgi associated, gamma adaptin ear containing, ARF binding protein 3
involved_in
ISO
(PMID:17553422)
RGD
PMID:17553422
NCBI chr10:100,825,427...100,843,422
Ensembl chr10:100,825,426...100,844,462
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Hap1
huntingtin-associated protein 1
involved_in
IMP
PMID:22731248
UniProt
PMID:22731248
RGD:10047200
NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126
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Igf1
insulin-like growth factor 1
involved_in
ISO IEA
RNAcentral:URS000034B6F5_9606 (PMID:27277332) GO_REF:0000107
RGD Ensembl
PMID:27277332
GO_REF:0000107
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Mir153
microRNA 153
involved_in
ISO
(PMID:22733824)
RGD
PMID:22733824
NCBI chr 6:138,163,595...138,163,681
Ensembl chr 6:138,163,595...138,163,681
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Mir15b
microRNA 15b
acts_upstream_of
ISO
(PMID:29961672)
RGD
PMID:29961672
NCBI chr 2:153,245,200...153,245,297
Ensembl chr 2:153,245,200...153,245,297
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Mir186
microRNA 186
acts_upstream_of
ISO
(PMID:25100943)
RGD
PMID:25100943
NCBI chr 2:246,582,806...246,582,891
Ensembl chr 2:246,582,806...246,582,891
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Mir24-2
microRNA 24-2
acts_upstream_of
ISO
(PMID:25100943)
RGD
PMID:25100943
NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790
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Mir298
microRNA 298
acts_upstream_of
ISO
(PMID:31942037)
RGD
PMID:31942037
NCBI chr 3:163,052,291...163,052,372
Ensembl chr 3:163,052,291...163,052,372
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Mir29a
microRNA 29a
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr 4:59,650,608...59,650,695
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Mir29b1
microRNA 29b-1
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr 4:59,650,987...59,651,067
Ensembl chr 4:59,650,986...59,651,067
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Mir29b2
microRNA 29b-2
acts_upstream_of
ISO
(PMID:18434550)
RGD
PMID:18434550
NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456
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Mir339
microRNA 339
acts_upstream_of
ISO
(PMID:24352696)
RGD
PMID:24352696
NCBI chr12:15,277,546...15,277,641
Ensembl chr12:15,277,546...15,277,641
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Mir361
microRNA 361
involved_in
ISO
(PMID:31601077)
RGD
PMID:31601077
NCBI chr X:78,246,206...78,246,275
Ensembl chr X:78,246,206...78,246,275
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Mir455
microRNA 455
acts_upstream_of
ISO
(PMID:25100943), (PMID:31181293)
RGD
PMID:25100943 PMID:31181293
NCBI chr 5:76,689,313...76,689,390
Ensembl chr 5:76,689,313...76,689,390
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Ntrk2
neurotrophic receptor tyrosine kinase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 UniProtKB:P05067-4 (PMID:26094765)
Ensembl RGD
PMID:26094765
GO_REF:0000107
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
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Olfm1
olfactomedin 1
acts_upstream_of_or_within
ISO
(MGI:5444053|PMID:22992957)
RGD
PMID:22992957
MGI:5444053
NCBI chr 3:11,520,522...11,558,240
Ensembl chr 3:11,520,729...11,558,239
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Pin1
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
involved_in
ISO
(PMID:25576397) (MGI:3620333|PMID:16554819)
RGD
PMID:16554819 PMID:25576397
MGI:3620333
NCBI chr 8:19,189,408...19,200,785
Ensembl chr 8:19,189,373...19,200,785
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Prnp
prion protein
involved_in
ISO
UniProtKB:P12023 (MGI:3714552|PMID:17573534)
RGD
PMID:17573534
MGI:3714552
NCBI chr 3:119,186,073...119,201,513
Ensembl chr 3:119,177,485...119,203,937
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Rock1
Rho-associated coiled-coil containing protein kinase 1
involved_in
ISO IEA
(PMID:24305806), (PMID:27853422) GO_REF:0000107
RGD Ensembl
PMID:24305806 PMID:27853422
GO_REF:0000107
NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571
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Rtn1
reticulon 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:15286784)
UniProt Ensembl RGD
PMID:15286784
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:90,763,212...90,983,436
Ensembl chr 6:90,763,216...90,983,436
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Rtn2
reticulon 2
involved_in
ISO ISS
(PMID:15286784) GO_REF:0000024
RGD UniProt
PMID:15286784
GO_REF:0000024
NCBI chr 1:78,935,056...78,948,069
Ensembl chr 1:78,935,104...78,948,069
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Rtn3
reticulon 3
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:15286784)
UniProt Ensembl RGD
PMID:15286784
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:204,612,675...204,669,212
Ensembl chr 1:204,612,675...204,669,275
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Rtn4
reticulon 4
involved_in
ISO IEA ISS
(PMID:15286784) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:15286784
GO_REF:0000024 GO_REF:0000107
NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
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Sorl1
sortilin related receptor 1
involved_in
ISO
(PMID:16407538), (PMID:17855360), (PMID:21989385), (PMID:22621900), (PMID:24001769), (PMID:24523320) (MGI:3801250|PMID:18362153), (MGI:3821635|PMID:19036982)
RGD
PMID:16407538 PMID:17855360 PMID:18362153 PMID:19036982 PMID:21989385 PMID:22621900 PMID:24001769 PMID:24523320 More...
MGI:3801250 MGI:3821635
NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513
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Spon1
spondin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3607023|PMID:16227578)
Ensembl RGD
PMID:16227578
GO_REF:0000107 MGI:3607023
NCBI chr 1:167,929,049...168,228,239
Ensembl chr 1:167,928,972...168,228,226
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Abca2
ATP binding cassette subfamily A member 2
acts_upstream_of
ISO
UniProtKB:P56818 (PMID:20704561), (PMID:22086926)
RGD
PMID:20704561 PMID:22086926
NCBI chr 3:8,244,515...8,264,545
Ensembl chr 3:8,244,639...8,264,537
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Ranbp9
RAN binding protein 9
acts_upstream_of
IGI
PMID:24592211
ARUK-UCL
PMID:24592211
RGD:38501074
NCBI chr17:21,220,807...21,303,009
Ensembl chr17:21,220,618...21,303,004
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Rock2
Rho-associated coiled-coil containing protein kinase 2
involved_in
ISO
(PMID:24305806) (MGI:6114922|PMID:24305806)
RGD
PMID:24305806
MGI:6114922
NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
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Spon1
spondin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3607023|PMID:16227578)
Ensembl RGD
PMID:16227578
GO_REF:0000107 MGI:3607023
NCBI chr 1:167,929,049...168,228,239
Ensembl chr 1:167,928,972...168,228,226
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Abca2
ATP binding cassette subfamily A member 2
acts_upstream_of involved_in
ISO IEA IMP
(PMID:22086926) GO_REF:0000107
RGD Ensembl
PMID:22086926 PMID:22086926
GO_REF:0000107, RGD:14697726
NCBI chr 3:8,244,515...8,264,545
Ensembl chr 3:8,244,639...8,264,537
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Abcg1
ATP binding cassette subfamily G member 1
involved_in
ISO
(PMID:17293612)
RGD
PMID:17293612
NCBI chr20:9,126,687...9,182,948
Ensembl chr20:9,126,687...9,182,948
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Apoe
apolipoprotein E
involved_in
ISO
(PMID:24154541), (PMID:24259049)
RGD
PMID:24154541 PMID:24259049
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Casp3
caspase 3
involved_in
IDA ISO
PMID:17553422 (PMID:17553422)
RGD
PMID:17553422 PMID:17553422
RGD:13825190
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:P05067 (MGI:4437154|PMID:20164328)
Ensembl RGD
PMID:20164328
GO_REF:0000107 MGI:4437154
NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240
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Clu
clusterin
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:2384259|PMID:12145324) GO_REF:0000024
Ensembl RGD Alzheimers_University_of_Toronto
PMID:12145324
GO_REF:0000024 GO_REF:0000107 MGI:2384259
NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
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Csnk1e
casein kinase 1, epsilon
IDA
RGD
PMID:17360493
RGD:10395238
NCBI chr 7:110,983,322...111,006,926
Ensembl chr 7:110,983,318...111,006,794
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Efna1
ephrin A1
involved_in
ISO IEA
(PMID:24217950) GO_REF:0000107
RGD Ensembl
PMID:24217950
GO_REF:0000107
NCBI chr 2:174,681,676...174,689,061
Ensembl chr 2:174,681,682...174,690,866
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Epha4
Eph receptor A4
involved_in
ISO
UniProtKB:P20827 (PMID:24217950)
RGD
PMID:24217950
NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
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Gsap
gamma-secretase activating protein
involved_in
IBA ISO
PMID:21873635 (MGI:4830390|PMID:20811458) (PMID:20811458)
RGD
PMID:20811458 PMID:21873635
MGI:4830390 , RGD:13792537
NCBI chr 4:13,813,046...13,907,875
Ensembl chr 4:13,813,046...13,907,814
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Gsk3a
glycogen synthase kinase 3 alpha
involved_in
ISO IEA
UniProtKB:P49841 (PMID:12761548) GO_REF:0000107
RGD Ensembl
PMID:12761548
GO_REF:0000107
NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
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Ifng
interferon gamma
involved_in
ISO
UniProtKB:P05067|UniProtKB:P10636|UniProtKB:P49768 (PMID:19808651) UniProtKB:P05067|UniProtKB:P15261 (MGI:3697769|PMID:17255335)
RGD
PMID:17255335 PMID:19808651
MGI:3697769
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Ifngr1
interferon gamma receptor 1
involved_in
ISO
UniProtKB:P01579|UniProtKB:P05067 (MGI:3697769|PMID:17255335)
RGD
PMID:17255335
MGI:3697769
NCBI chr 1:14,333,167...14,351,799
Ensembl chr 1:14,333,187...14,351,785
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Lrrtm3
leucine rich repeat transmembrane neuronal 3
acts_upstream_of_or_within
ISO
(MGI:3695648|PMID:17098871) (PMID:17098871)
RGD
PMID:17098871
MGI:3695648
NCBI chr20:24,515,627...24,689,669
Ensembl chr20:24,515,627...24,689,669
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Mir206
microRNA 206
involved_in
ISO
(PMID:27277332)
RGD
PMID:27277332
NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332
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Picalm
phosphatidylinositol binding clathrin assembly protein
involved_in
ISO ISS IEA
(PMID:24577224) (MGI:5432454|PMID:22539346), (MGI:5560380|PMID:24577224) GO_REF:0000024 GO_REF:0000107
RGD Alzheimers_University_of_Toronto Ensembl
PMID:22539346 PMID:24577224
GO_REF:0000024 GO_REF:0000107 MGI:5432454 MGI:5560380
NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
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Rela
RELA proto-oncogene, NF-kB subunit
acts_upstream_of
ISO
(MGI:6414694|PMID:21329555)
RGD
PMID:21329555
MGI:6414694
NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
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Rock2
Rho-associated coiled-coil containing protein kinase 2
involved_in
ISO IEA
(PMID:24305806) GO_REF:0000107 (MGI:6114922|PMID:24305806)
RGD Ensembl
PMID:24305806
GO_REF:0000107 MGI:6114922
NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
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Slc2a13
solute carrier family 2 member 13
involved_in
ISO
UniProtKB:P05067-4 (PMID:26094765)
RGD
PMID:26094765
NCBI chr 7:122,399,329...122,726,605
Ensembl chr 7:122,399,330...122,726,605
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Sp1
Sp1 transcription factor
acts_upstream_of
ISO
(PMID:14701757)
RGD
PMID:14701757
NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
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Tnf
tumor necrosis factor
involved_in
ISO
(MGI:3697769|PMID:17255335)
RGD
PMID:17255335
MGI:3697769
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Olfm1
olfactomedin 1
acts_upstream_of_or_within
ISO
(MGI:5444053|PMID:22992957)
RGD
PMID:22992957
MGI:5444053
NCBI chr 3:11,520,522...11,558,240
Ensembl chr 3:11,520,729...11,558,239
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Picalm
phosphatidylinositol binding clathrin assembly protein
NOT|involved_in
ISO
UniProtKB:P05067-PRO_0000000092 (MGI:5637941|PMID:26005850)
RGD
PMID:26005850
MGI:5637941
NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
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Tmed10
transmembrane p24 trafficking protein 10
involved_in
ISO IEA ISS
(PMID:16641999) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:16641999
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753
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