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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of pri-miRNA transcription by RNA polymerase II
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Accession:GO:1902893 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of pri-miRNA transcription mediated by RNA polymerase II.
Synonyms:exact_synonym: regulation of pri-miRNA transcription from RNA polymerase II promoter


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regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Ddx5 DEAD-box helicase 5 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Tgfb1 transforming growth factor, beta 1 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
negative regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO (PMID:24827165), (PMID:25152461) RGD PMID:24827165 PMID:25152461 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:28124060)
Ensembl
RGD
PMID:28124060 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Gata6 GATA binding protein 6 involved_in IMP PMID:25950484 BHF-UCL PMID:25950484 RGD:11541106 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:Q6NZM9 (MGI:5754467|PMID:24675724) RGD PMID:24675724 MGI:5754467 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO UniProtKB:P70288 (MGI:5754467|PMID:24675724) RGD PMID:24675724 MGI:5754467 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Lilrb4 leukocyte immunoglobulin like receptor B4 involved_in ISO (PMID:22387553) RGD PMID:22387553 NCBI chr 1:73,393,854...73,399,448
Ensembl chr 1:73,393,850...73,399,579
JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 involved_in ISO UniProtKB:Q14934 (PMID:23543060) RGD PMID:23543060 NCBI chr19:38,039,542...38,114,003
Ensembl chr19:38,039,564...38,114,003
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 involved_in ISO UniProtKB:Q12968 (PMID:23543060) RGD PMID:23543060 NCBI chr15:34,493,163...34,502,238
Ensembl chr15:34,493,138...34,504,326
JBrowse link
G Nfib nuclear factor I/B involved_in ISO (PMID:18384814) RGD PMID:18384814 NCBI chr 5:100,436,343...100,647,962
Ensembl chr 5:100,439,082...100,647,727
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
IEA
(PMID:26493107)
GO_REF:0000107
RGD
Ensembl
PMID:26493107 GO_REF:0000107 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha involved_in ISO (PMID:21636785) RGD PMID:21636785 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta involved_in ISO (MGI:5705218|PMID:20445066) RGD PMID:20445066 MGI:5705218 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (PMID:23878390) RGD PMID:23878390 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:26687115) RGD PMID:26687115 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Srf serum response factor involved_in ISO (MGI:5688838|PMID:21303526) RGD PMID:21303526 MGI:5688838 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in IMP PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5754467|PMID:24675724) RGD PMID:24675724 MGI:5754467 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
positive regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apln apelin involved_in ISO (PMID:23263626) RGD PMID:23263626 NCBI chr  X:134,856,719...134,866,210
Ensembl chr  X:134,856,726...134,866,210
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO UniProtKB:P23769 (PMID:27780851) RGD PMID:27780851 NCBI chr 4:100,067,341...100,099,517
Ensembl chr 4:100,067,341...100,099,517
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P21275 (MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P21274 (MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:4939577 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctcf CCCTC-binding factor involved_in IMP PMID:27124358 BHF-UCL PMID:27124358 RGD:11344932 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Egr1 early growth response 1 involved_in ISO
IEA
(PMID:19307576)
GO_REF:0000107
RGD
Ensembl
PMID:19307576 GO_REF:0000107 NCBI chr18:27,657,903...27,660,101
Ensembl chr18:27,657,628...27,661,429
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO (PMID:21711453) RGD PMID:21711453 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit involved_in IDA PMID:18384814 BHF-UCL PMID:18384814 RGD:10402042 NCBI chr 6:109,300,433...109,303,299
Ensembl chr 6:109,300,433...109,303,299
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit involved_in ISO (PMID:21673316) RGD PMID:21673316 NCBI chr 1:220,826,560...220,835,066
Ensembl chr 1:220,826,560...220,835,066
JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (MGI:4881905|PMID:19933931) RGD PMID:19933931 MGI:4881905 NCBI chr20:46,428,078...46,519,156
Ensembl chr20:46,428,124...46,519,144
JBrowse link
G Gata2 GATA binding protein 2 involved_in IBA
ISO
PMID:21873635
UniProtKB:Q96SQ7 (PMID:27780851)
RGD PMID:27780851, PMID:21873635 RGD:13792537 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (PMID:26451614) RGD PMID:26451614 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gnl3 G protein nucleolar 3 involved_in ISO (PMID:25569094) RGD PMID:25569094 NCBI chr16:7,097,580...7,103,518
Ensembl chr16:7,097,507...7,103,604
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISO
IEA
(PMID:19141645), (PMID:19782034), (PMID:24983504)
GO_REF:0000107
RGD
Ensembl
PMID:19141645 PMID:19782034 PMID:24983504 GO_REF:0000107 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Il10 interleukin 10 involved_in ISO (PMID:23071313) RGD PMID:23071313 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO
IDA
(PMID:19962668), (PMID:24375836)
PMID:18384814
RGD PMID:19962668 PMID:24375836, PMID:18384814 RGD:10402042 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Klf4 Kruppel like factor 4 involved_in ISO (PMID:23867820) RGD PMID:23867820 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Klf5 Kruppel-like factor 5 involved_in ISO (PMID:28408180) RGD PMID:28408180 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in IMP PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G Ngfr nerve growth factor receptor involved_in IEA
ISO
GO_REF:0000107
(PMID:26268439)
Ensembl
RGD
PMID:26268439 GO_REF:0000107 NCBI chr10:83,389,828...83,408,061
Ensembl chr10:83,389,847...83,408,061
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in ISO (PMID:27334923)
(MGI:5616008|PMID:25510864)
RGD PMID:25510864 PMID:27334923 MGI:5616008 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
IEA
(PMID:19088079)
GO_REF:0000107
RGD
Ensembl
PMID:19088079 GO_REF:0000107 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:28566713) RGD PMID:28566713 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Prl prolactin involved_in ISO (PMID:23619365) RGD PMID:23619365 NCBI chr17:39,814,236...39,824,299
Ensembl chr17:39,814,244...39,824,299
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in IMP
ISO
PMID:20546595
PMID:28484848
(PMID:23619365), (PMID:26268439)
RGD PMID:23619365 PMID:26268439, PMID:20546595, PMID:28484848 RGD:12903243, RGD:13601996 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Smad1 SMAD family member 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (PMID:26311719) RGD PMID:26311719 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:6094665|PMID:23426367)
Ensembl
RGD
PMID:23426367 GO_REF:0000107 MGI:6094665 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:4939577 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:25569094) RGD PMID:25569094 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (PMID:20972335)
(MGI:5693226|PMID:18384814)
RGD PMID:18384814 PMID:20972335 MGI:5693226 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24296663)
(MGI:5501359|PMID:23823476)
RGD PMID:23823476 PMID:24296663 MGI:5501359 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5501359|PMID:23823476)
Ensembl
RGD
PMID:23823476 GO_REF:0000107 MGI:5501359 NCBI chr 7:123,381,082...123,438,605
Ensembl chr 7:123,381,077...123,438,603
JBrowse link
G Srf serum response factor involved_in ISO (MGI:4354665|PMID:19578358), (MGI:5688838|PMID:21303526) RGD PMID:19578358 PMID:21303526 MGI:4354665 MGI:5688838 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:19390056), (PMID:23820254)
(MGI:5897552|PMID:20546595)
RGD PMID:19390056 PMID:20546595 PMID:23820254 MGI:5897552 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tead1 TEA domain transcription factor 1 involved_in ISO (PMID:26045994) RGD PMID:26045994 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:25569094) RGD PMID:25569094 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:26311719), (PMID:26493107) RGD PMID:26311719 PMID:26493107 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:25217442)
Ensembl
RGD
PMID:25217442 GO_REF:0000107 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in IMP PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tnf tumor necrosis factor acts_upstream_of ISO (PMID:22499991) RGD PMID:22499991 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tp53 tumor protein p53 involved_in ISO UniProtKB:P01375 (PMID:20546595), (PMID:22499991) RGD PMID:20546595 PMID:22499991 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:23042785) RGD PMID:23042785 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    metabolic process 11911
      regulation of metabolic process 6825
        regulation of macromolecule metabolic process 6310
          regulation of gene expression 4799
            regulation of transcription, DNA-templated 3271
              regulation of transcription by RNA polymerase II 2387
                regulation of pri-miRNA transcription by RNA polymerase II 58
                  negative regulation of pri-miRNA transcription by RNA polymerase II 18
                  positive regulation of pri-miRNA transcription by RNA polymerase II 44
Path 2
Term Annotations click to browse term
  biological_process 19633
    metabolic process 11911
      cellular metabolic process 10866
        cellular aromatic compound metabolic process 5616
          nucleobase-containing compound metabolic process 5404
            nucleic acid metabolic process 4915
              RNA metabolic process 4400
                RNA biosynthetic process 3419
                  nucleic acid-templated transcription 3404
                    transcription, DNA-templated 3402
                      regulation of transcription, DNA-templated 3271
                        regulation of transcription by RNA polymerase II 2387
                          regulation of pri-miRNA transcription by RNA polymerase II 58
                            negative regulation of pri-miRNA transcription by RNA polymerase II 18
                            positive regulation of pri-miRNA transcription by RNA polymerase II 44
paths to the root