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ONTOLOGY REPORT - ANNOTATIONS

Term:negative regulation of RNA biosynthetic process
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Accession:GO:1902679 term browser browse the term
Definition:Any process that stops, prevents or reduces the frequency, rate or extent of RNA biosynthetic process.
Synonyms:exact_synonym: down regulation of RNA anabolism;   down regulation of RNA biosynthesis;   down regulation of RNA biosynthetic process;   down regulation of RNA formation;   down regulation of RNA synthesis;   downregulation of RNA anabolism;   downregulation of RNA biosynthesis;   downregulation of RNA biosynthetic process;   downregulation of RNA formation;   downregulation of RNA synthesis;   negative regulation of RNA anabolism;   negative regulation of RNA biosynthesis;   negative regulation of RNA formation;   negative regulation of RNA synthesis
 narrow_synonym: inhibition of RNA anabolism;   inhibition of RNA biosynthesis;   inhibition of RNA biosynthetic process;   inhibition of RNA formation;   inhibition of RNA synthesis


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negative regulation of RNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rgn regucalcin IMP RGD PMID:12397604 RGD:1566573 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450 		JBrowse link
negative regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) RGD PMID:8524305 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
negative regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929), (PMID:9857195) RGD PMID:9450929 PMID:9857195 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:10075709), (PMID:9450929) RGD PMID:9450929 PMID:10075709 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
negative regulation of lncRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA
ISO		 PMID:21873635
(PMID:21835787)		 RGD PMID:21835787 PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS		 (PMID:17005673)
GO_REF:0000024		 RGD
UniProt		 PMID:17005673 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:18774950) RGD PMID:18774950 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in ISO (PMID:29211708)
(MGI:6271895|PMID:29728365)		 RGD PMID:29211708 PMID:29728365 MGI:6271895 NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 involved_in ISO
ISS		 (PMID:29211708)
GO_REF:0000024		 RGD
UniProt		 PMID:29211708 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Resf1 retroelement silencing factor 1 involved_in ISO (MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:6271895 NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 involved_in ISO (MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365) RGD PMID:20164836 PMID:29728365 MGI:5440670 MGI:6271895 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:29211708) RGD PMID:29211708 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Trim28 tripartite motif-containing 28 involved_in
acts_upstream_of_or_within		 ISO (MGI:5440670|PMID:20164836)
MGI:2143362 (MGI:3842857|PMID:19270682)		 RGD PMID:19270682 PMID:20164836 MGI:3842857 MGI:5440670 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
negative regulation of termination of DNA-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Per2 period circadian regulator 2 involved_in ISO (MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:5430667 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf4 SR-related CTD-associated factor 4 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:31104839)
PMID:21873635		 UniProt
RGD		 PMID:31104839 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISO
ISS
IEA		 (PMID:31104839)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
negative regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO (MGI:1336856|PMID:10318824), (MGI:3840033|PMID:19204372) RGD PMID:10318824 PMID:19204372 MGI:1336856 MGI:3840033 NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097 (MGI:3846264|PMID:19303854) RGD PMID:19303854 MGI:3846264 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO		 GO_REF:0000107
(PMID:10490622)		 Ensembl
RGD		 PMID:10490622 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Nelfa negative elongation factor complex member A acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:5014448|PMID:21670248)
PMID:21873635
(PMID:12612062)		 RGD PMID:12612062 PMID:21670248 PMID:21873635 MGI:5014448, RGD:13792537 NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO
IBA		 (MGI:3845453|PMID:19340312), (MGI:5576446|PMID:24656816), (MGI:6270977|PMID:25773599)
PMID:21873635
(PMID:12612062)		 RGD PMID:12612062 PMID:19340312 PMID:24656816 PMID:25773599 PMID:21873635 MGI:3845453 MGI:5576446 MGI:6270977, RGD:13792537 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Nelfcd negative elongation factor complex member C/D involved_in ISO
IBA		 (PMID:12612062)
PMID:21873635		 RGD PMID:12612062 PMID:21873635 RGD:13792537 NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884 		JBrowse link
G Nelfe negative elongation factor complex member E acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:5014448|PMID:21670248)
(PMID:12612062), (PMID:14701750), (PMID:27256882)
PMID:21873635
(MGI:6357632|PMID:31399344)		 RGD PMID:12612062 PMID:14701750 PMID:21670248 PMID:27256882 PMID:31399344 More... MGI:5014448 MGI:6357632, RGD:13792537 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:35393539) RGD PMID:35393539 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISO
ISS		 (PMID:23748380)
GO_REF:0000024		 RGD
UniProt		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20550933)		 UniProt
RGD		 PMID:20550933 GO_REF:0000024 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO
ISS		 (PMID:20550933)
GO_REF:0000024		 RGD
UniProt		 PMID:20550933 GO_REF:0000024 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3703195|PMID:17284610)		 Ensembl
RGD		 PMID:17284610 GO_REF:0000107 MGI:3703195 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (MGI:6357632|PMID:31399344) RGD PMID:25247314 PMID:31399344 MGI:6214653 MGI:6357632 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit acts_upstream_of_or_within ISO (MGI:5014448|PMID:21670248) RGD PMID:21670248 MGI:5014448 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
negative regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnbip1 catenin, beta-interacting protein 1 involved_in ISO (MGI:4821083|PMID:11751639) RGD PMID:11751639 MGI:4821083 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:10692439) RGD PMID:10692439 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (MGI:6106288|PMID:29138493) RGD PMID:29138493 MGI:6106288 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712 		JBrowse link
G Zfp451 zinc finger protein 451 involved_in ISO
IBA		 (PMID:24324267)
PMID:21873635		 RGD PMID:24324267 PMID:21873635 RGD:13792537 NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652 		JBrowse link
G Zfp473 zinc finger protein 473 IMP RGD PMID:12748187 RGD:1299608 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      biosynthetic process 6260
        negative regulation of biosynthetic process 1770
          negative regulation of macromolecule biosynthetic process 1654
            negative regulation of RNA biosynthetic process 41
              negative regulation of DNA primase activity 0
              negative regulation of DNA-templated transcription initiation + 8
              negative regulation of DNA-templated transcription, elongation + 19
              negative regulation of antisense RNA transcription 0
              negative regulation of lncRNA transcription 2
              negative regulation of promoter clearance from RNA polymerase II promoter 0
              negative regulation of single stranded viral RNA replication via double stranded DNA intermediate 10
              negative regulation of termination of DNA-templated transcription + 3
Path 2
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      cellular metabolic process 7444
        cellular aromatic compound metabolic process 3032
          nucleobase-containing compound metabolic process 2783
            nucleic acid metabolic process 2274
              RNA metabolic process 1424
                regulation of RNA metabolic process 597
                  negative regulation of RNA metabolic process 171
                    negative regulation of RNA biosynthetic process 41
                      negative regulation of DNA primase activity 0
                      negative regulation of DNA-templated transcription initiation + 8
                      negative regulation of DNA-templated transcription, elongation + 19
                      negative regulation of antisense RNA transcription 0
                      negative regulation of lncRNA transcription 2
                      negative regulation of promoter clearance from RNA polymerase II promoter 0
                      negative regulation of single stranded viral RNA replication via double stranded DNA intermediate 10
                      negative regulation of termination of DNA-templated transcription + 3
paths to the root