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ONTOLOGY REPORT - ANNOTATIONS


Term:secondary alcohol metabolic process
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Accession:GO:1902652 term browser browse the term
Definition:The chemical reactions and pathways involving secondary alcohol.
Synonyms:exact_synonym: secondary alcohol metabolism


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6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Renbp renin binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936809:817,392...823,926
Ensembl chrNW_004936809:817,355...823,941
JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101963150 sterol 26-hydroxylase, mitochondrial involved_in IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936569:1,213,700...1,250,181
Ensembl chrNW_004936569:1,213,573...1,250,589
JBrowse link
G LOC101972957 vitamin D 25-hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:3,881,630...3,897,613
Ensembl chrNW_004936528:3,881,087...3,900,302
JBrowse link
G LOC101978323 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial involved_in IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936646:1,899,686...1,904,104
Ensembl chrNW_004936646:1,900,259...1,904,104
JBrowse link
cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180727|PMID:8647961) MGI
Ensembl
PMID:8647961 GO_REF:0000107 MGI:2180727 NCBI chrNW_004936542:2,111,055...2,112,626
Ensembl chrNW_004936542:2,111,052...2,112,854
JBrowse link
G Cftr CF transmembrane conductance regulator acts_upstream_of_or_within ISO (MGI:3709533|PMID:17085523) MGI PMID:17085523 MGI:3709533 NCBI chrNW_004936589:1,565,933...1,719,208 JBrowse link
G Dhcr24 24-dehydrocholesterol reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2686848|PMID:14684813), (MGI:3624168|PMID:16321981), (MGI:3769949|PMID:16513830)
(PMID:11519011)
MGI
Ensembl
PMID:11519011 PMID:14684813 PMID:16321981 PMID:16513830 GO_REF:0000107 MGI:2686848 MGI:3624168 MGI:3769949 NCBI chrNW_004936522:6,423,561...6,447,363
Ensembl chrNW_004936522:6,423,561...6,444,814
JBrowse link
G Ebp EBP cholestenol delta-isomerase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:11171067 GO_REF:0000107 GO_REF:0000118 RGD:628445 NCBI chrNW_004936721:508,716...515,968
Ensembl chrNW_004936721:509,374...515,918
JBrowse link
G Fdft1 farnesyl-diphosphate farnesyltransferase 1 ISO RGD PMID:16440058 RGD:1626611 NCBI chrNW_004936628:3,599,435...3,600,061 JBrowse link
G G6pd glucose-6-phosphate dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,269,900...1,285,853
Ensembl chrNW_004936809:1,269,914...1,285,889
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180727|PMID:8647961), (MGI:3603484|PMID:15845870), (MGI:70238|PMID:7798939) MGI
UniProt
Ensembl
PMID:7798939 PMID:8647961 PMID:15845870 GO_REF:0000043 GO_REF:0000107 MGI:2180727 MGI:3603484 MGI:70238 NCBI chrNW_004936549:1,378,536...1,400,501
Ensembl chrNW_004936549:1,378,736...1,400,532
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936480:18,862,288...18,882,614
Ensembl chrNW_004936480:18,862,238...18,882,616
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936627:4,451,847...4,473,163
Ensembl chrNW_004936627:4,451,823...4,473,223
JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2673751|PMID:12829805) MGI
TreeGrafter
Ensembl
PMID:12829805 GO_REF:0000107 GO_REF:0000118 MGI:2673751 NCBI chrNW_004936831:951,603...976,159
Ensembl chrNW_004936831:951,562...977,208
JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:13,054,155...13,061,935 JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:13,086,928...13,092,291
Ensembl chrNW_004936484:13,088,030...13,092,291
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3689278|PMID:16955138) MGI
TreeGrafter
Ensembl
PMID:16955138 GO_REF:0000107 GO_REF:0000118 MGI:3689278 NCBI chrNW_004936527:9,684,304...9,696,951
Ensembl chrNW_004936527:9,685,695...9,692,830
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3689278|PMID:16955138) MGI
TreeGrafter
Ensembl
PMID:16955138 GO_REF:0000107 GO_REF:0000118 MGI:3689278 NCBI chrNW_004936469:52,120,063...52,140,646
Ensembl chrNW_004936469:52,117,733...52,140,765
JBrowse link
G Lbr lamin B receptor involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936526:2,254,463...2,282,785
Ensembl chrNW_004936526:2,254,449...2,282,785
JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962
JBrowse link
G LOC101962805 NADH-cytochrome b5 reductase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936718:552,369...564,195
Ensembl chrNW_004936718:549,938...564,195
JBrowse link
G LOC101970547 isopentenyl-diphosphate Delta-isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936518:10,541,992...10,542,792 JBrowse link
G LOC101971285 7-dehydrocholesterol reductase involved_in ISO (PMID:9465114) RGD
UniProt
PMID:9465114 PMID:9831636 PMID:10329655 RGD:2316918 RGD:632010 NCBI chrNW_004936794:1,432,379...1,468,966 JBrowse link
G Lss lanosterol synthase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:1429550 PMID:16440058 GO_REF:0000107 GO_REF:0000118 RGD:1626611 RGD:2316919 NCBI chrNW_004936778:323,120...351,100
Ensembl chrNW_004936778:323,014...351,102
JBrowse link
G Mvd mevalonate diphosphate decarboxylase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004936641:1,030,465...1,035,967
Ensembl chrNW_004936641:1,030,595...1,035,954
JBrowse link
G Mvk mevalonate kinase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936769:1,274,595...1,295,186
Ensembl chrNW_004936769:1,274,540...1,298,178
JBrowse link
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 involved_in ISO (PMID:17140581) HGNC-UCL PMID:17140581 NCBI chrNW_004936478:19,434,557...19,452,245
Ensembl chrNW_004936478:19,434,557...19,452,248
JBrowse link
G Pmvk phosphomevalonate kinase involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:4,473,554...4,482,396
Ensembl chrNW_004936580:4,473,359...4,482,631
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936518:1,817,051...1,843,376
Ensembl chrNW_004936518:1,804,969...1,843,380
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936522:4,872,360...4,939,873
Ensembl chrNW_004936522:4,875,046...4,939,879
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 acts_upstream_of
involved_in
ISO
IEA
(MGI:1098057|PMID:9329978) MGI
Ensembl
PMID:9329978 GO_REF:0000107 MGI:1098057 NCBI chrNW_004936741:1,408,669...1,419,717
Ensembl chrNW_004936741:1,406,521...1,419,776
JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,253,725...4,258,198
Ensembl chrNW_004936599:4,253,735...4,258,071
JBrowse link
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101955024 lanosterol 14-alpha demethylase ISO RGD PMID:7581240 RGD:2316902 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531
JBrowse link
cholesterol biosynthetic process via desmosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhcr24 24-dehydrocholesterol reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:6,423,561...6,447,363
Ensembl chrNW_004936522:6,423,561...6,444,814
JBrowse link
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msmo1 methylsterol monooxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936555:664,171...678,082
Ensembl chrNW_004936555:664,158...678,208
JBrowse link
G Sc5d sterol-C5-desaturase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7961720 GO_REF:0000118 RGD:2316911 NCBI chrNW_004936542:6,046,425...6,062,825
Ensembl chrNW_004936542:6,046,390...6,059,074
JBrowse link
cholesterol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1d1 aldo-keto reductase family 1 member D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:2,486,219...2,522,796
Ensembl chrNW_004936592:2,491,681...2,522,796
JBrowse link
G Apoe apolipoprotein E acts_upstream_of_or_within ISO (MGI:1314982|PMID:9826706) MGI PMID:9826706 MGI:1314982 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 ISO RGD PMID:16081591 RGD:1599972 NCBI chrNW_004936501:13,363,630...13,367,553
Ensembl chrNW_004936501:13,363,576...13,367,553
JBrowse link
G LOC101961079 cholesterol 24-hydroxylase involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936604:3,451,853...3,490,688
Ensembl chrNW_004936604:3,451,842...3,491,159
JBrowse link
G LOC101963150 sterol 26-hydroxylase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,213,700...1,250,181
Ensembl chrNW_004936569:1,213,573...1,250,589
JBrowse link
G LOC101970910 cytochrome P450 7A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933035|PMID:11279518), (MGI:3603484|PMID:15845870) MGI
InterPro
Ensembl
PMID:11279518 PMID:15845870 GO_REF:0000002 GO_REF:0000107 MGI:1933035 MGI:3603484 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G LOC101972335 24-hydroxycholesterol 7-alpha-hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859119|PMID:10748047) MGI
Ensembl
PMID:10748047 GO_REF:0000107 MGI:1859119 NCBI chrNW_004936476:13,697,598...13,819,362
Ensembl chrNW_004936476:13,697,583...13,819,109
JBrowse link
G Scarb1 scavenger receptor class B member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934548|PMID:11278646)
(MGI:3690692|PMID:10559220)
MGI
Ensembl
PMID:10559220 PMID:11278646 GO_REF:0000107 MGI:1934548 MGI:3690692 NCBI chrNW_004936558:530,828...555,098
Ensembl chrNW_004936558:530,828...552,892
JBrowse link
cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153573|PMID:11559713) MGI
Ensembl
PMID:11559713 GO_REF:0000107 MGI:2153573 NCBI chrNW_004936559:7,177,887...7,312,660
Ensembl chrNW_004936559:7,177,904...7,312,741
JBrowse link
G Abca5 ATP binding cassette subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:8,467,035...8,549,893
Ensembl chrNW_004936541:8,463,436...8,539,942
JBrowse link
G Abcg1 ATP binding cassette subfamily G member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:1,620,763...1,678,561
Ensembl chrNW_004936500:1,620,641...1,678,607
JBrowse link
G Angptl3 angiopoietin like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936692:286,432...295,021
Ensembl chrNW_004936692:286,717...294,822
JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (MGI:3762423|PMID:17920016) MGI PMID:17920016 MGI:3762423 NCBI chrNW_004936572:2,205,527...2,277,786
Ensembl chrNW_004936572:2,205,478...2,277,842
JBrowse link
G Apoa1 apolipoprotein A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1099137|PMID:9327769), (MGI:1339278|PMID:10357841), (MGI:3487338|PMID:15466405), (MGI:3688492|PMID:9795222), (MGI:3696597|PMID:17071966), (MGI:70854|PMID:7751823)
(MGI:3588626|PMID:15995171)
MGI
UniProt
Ensembl
PMID:7751823 PMID:9327769 PMID:9795222 PMID:10357841 PMID:15466405 More... GO_REF:0000043 GO_REF:0000107 MGI:1099137 MGI:1339278 MGI:3487338 MGI:3588626 MGI:3688492 MGI:3696597 MGI:70854 NCBI chrNW_004936542:2,111,055...2,112,626
Ensembl chrNW_004936542:2,111,052...2,112,854
JBrowse link
G Apoa2 apolipoprotein A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1339279|PMID:10357838)
(MGI:1339279|PMID:10357838), (MGI:2180727|PMID:8647961)
MGI
TreeGrafter
Ensembl
PMID:8647961 PMID:10357838 GO_REF:0000107 GO_REF:0000118 MGI:1339279 MGI:2180727 NCBI chrNW_004936903:520,420...521,726
Ensembl chrNW_004936903:520,650...521,910
JBrowse link
G Apoa4 apolipoprotein A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,098,683...2,101,127
Ensembl chrNW_004936542:2,098,683...2,101,127
JBrowse link
G Apob apolipoprotein B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:10,509,118...10,549,144
Ensembl chrNW_004936493:10,509,118...10,549,144
JBrowse link
G Apoc1 apolipoprotein C1 acts_upstream_of_or_within ISO (MGI:70746|PMID:7848292) MGI PMID:7848292 MGI:70746 NCBI chrNW_004936706:1,519,248...1,520,102 JBrowse link
G Apoc3 apolipoprotein C3 acts_upstream_of_or_within ISO (MGI:2152463|PMID:11590213), (MGI:69667|PMID:8089130)
(MGI:82330|PMID:8864964)
MGI PMID:8089130 PMID:8864964 PMID:11590213 MGI:2152463 MGI:69667 MGI:82330 NCBI chrNW_004936542:2,106,927...2,108,412
Ensembl chrNW_004936542:2,106,318...2,108,603
JBrowse link
G Apoe apolipoprotein E involved_in
acts_upstream_of_or_within
ISO (PMID:9649566)
(MGI:2180727|PMID:8647961), (MGI:51330|PMID:1423598)
(PMID:3771793)
BHF-UCL
MGI
PMID:1423598 PMID:3771793 PMID:8647961 PMID:9649566 MGI:2180727 MGI:51330 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3762423|PMID:17920016) MGI
Ensembl
PMID:17920016 GO_REF:0000107 MGI:3762423 NCBI chrNW_004936640:1,549,977...1,787,436
Ensembl chrNW_004936640:1,550,167...1,787,286
JBrowse link
G Cat catalase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53683|PMID:5087482) MGI
Ensembl
PMID:5087482 GO_REF:0000107 MGI:53683 NCBI chrNW_004936533:3,601,270...3,637,128
Ensembl chrNW_004936533:3,600,955...3,637,422
JBrowse link
G Cebpa CCAAT enhancer binding protein alpha acts_upstream_of_or_within ISO (MGI:3847596|PMID:18974039) MGI PMID:18974039 MGI:3847596 NCBI chrNW_004936570:2,513,561...2,516,213 JBrowse link
G Cetp cholesteryl ester transfer protein involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:9,115,126...9,133,071
Ensembl chrNW_004936475:9,115,120...9,133,073
JBrowse link
G Ch25h cholesterol 25-hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1316846|PMID:9852097) MGI
TreeGrafter
Ensembl
PMID:9852097 GO_REF:0000107 GO_REF:0000118 MGI:1316846 NCBI chrNW_004936601:5,015,922...5,016,942
Ensembl chrNW_004936601:5,015,219...5,160,908
JBrowse link
G Cln6 CLN6 transmembrane ER protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:28,069,058...28,084,607
Ensembl chrNW_004936471:28,070,462...28,084,648
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936615:993,092...999,976
Ensembl chrNW_004936615:985,634...1,003,172
JBrowse link
G Dhcr24 24-dehydrocholesterol reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3614236|PMID:16407971) MGI
Ensembl
PMID:16407971 GO_REF:0000107 MGI:3614236 NCBI chrNW_004936522:6,423,561...6,447,363
Ensembl chrNW_004936522:6,423,561...6,444,814
JBrowse link
G Ebp EBP cholestenol delta-isomerase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:508,716...515,968
Ensembl chrNW_004936721:509,374...515,918
JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936636:80,583...116,027
Ensembl chrNW_004936636:80,564...116,694
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936710:1,193,679...1,210,059
Ensembl chrNW_004936710:1,193,411...1,210,739
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5447601|PMID:22912762)
(MGI:6282138|PMID:28053990)
MGI
Ensembl
PMID:22912762 PMID:28053990 GO_REF:0000107 MGI:5447601 MGI:6282138 NCBI chrNW_004936623:2,457,709...2,462,956
Ensembl chrNW_004936623:2,456,294...2,462,467
JBrowse link
G Fdx1 ferredoxin 1 involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936612:3,878,179...3,905,678
Ensembl chrNW_004936612:3,874,748...3,905,825
JBrowse link
G Fdxr ferredoxin reductase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936594:215,165...223,715
Ensembl chrNW_004936594:215,155...223,771
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1930023|PMID:11160364) MGI
Ensembl
PMID:11160364 GO_REF:0000107 MGI:1930023 NCBI chrNW_004936497:6,755,626...6,788,568
Ensembl chrNW_004936497:6,755,553...6,790,944
JBrowse link
G Fgl1 fibrinogen like 1 acts_upstream_of_or_within ISO (MGI:5505372|PMID:23483972) MGI PMID:23483972 MGI:5505372 NCBI chrNW_004936614:431,537...452,174
Ensembl chrNW_004936614:431,631...450,034
JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798
JBrowse link
G Gba2 glucosylceramidase beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,730,833...3,742,526
Ensembl chrNW_004936524:3,730,833...3,742,531
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936480:18,862,288...18,882,614
Ensembl chrNW_004936480:18,862,238...18,882,616
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936627:4,451,847...4,473,163
Ensembl chrNW_004936627:4,451,823...4,473,223
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933035|PMID:11279518) MGI
Ensembl
PMID:11279518 GO_REF:0000107 MGI:1933035 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505
JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:13,054,155...13,061,935 JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936484:13,086,928...13,092,291
Ensembl chrNW_004936484:13,088,030...13,092,291
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
Ensembl
UniProt
PMID:16100574 GO_REF:0000043 GO_REF:0000107 MGI:3603108 NCBI chrNW_004936527:9,684,304...9,696,951
Ensembl chrNW_004936527:9,685,695...9,692,830
JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
Ensembl
UniProt
PMID:16100574 GO_REF:0000043 GO_REF:0000107 MGI:3603108 NCBI chrNW_004936469:52,120,063...52,140,646
Ensembl chrNW_004936469:52,117,733...52,140,765
JBrowse link
G Lbr lamin B receptor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936526:2,254,463...2,282,785
Ensembl chrNW_004936526:2,254,449...2,282,785
JBrowse link
G Lcat lecithin-cholesterol acyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:10559507)
(MGI:1096057|PMID:9300780)
RGD
UniProt
Ensembl
MGI
PMID:746355 PMID:9300780 PMID:10559507 GO_REF:0000043 GO_REF:0000107 MGI:1096057 RGD:1581789 NCBI chrNW_004936475:18,294,013...18,297,433
Ensembl chrNW_004936475:18,293,716...18,298,248
JBrowse link
G Ldlr low density lipoprotein receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3696597|PMID:17071966) MGI
UniProt
Ensembl
PMID:17071966 GO_REF:0000043 GO_REF:0000107 MGI:3696597 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294
JBrowse link
G Ldlrap1 low density lipoprotein receptor adaptor protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:10,196,228...10,219,137
Ensembl chrNW_004936474:10,196,211...10,221,777
JBrowse link
G Lep leptin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588626|PMID:15995171) MGI
Ensembl
PMID:15995171 GO_REF:0000107 MGI:3588626 NCBI chrNW_004936479:15,394,966...15,411,334
Ensembl chrNW_004936479:15,394,966...15,411,334
JBrowse link
G Lepr leptin receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588626|PMID:15995171) MGI
Ensembl
PMID:15995171 GO_REF:0000107 MGI:3588626 NCBI chrNW_004936591:5,771,371...5,846,177
Ensembl chrNW_004936591:5,774,326...5,836,444
JBrowse link
G Lipc lipase C, hepatic type acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1339279|PMID:10357838) MGI
Ensembl
PMID:10357838 GO_REF:0000107 MGI:1339279 NCBI chrNW_004936471:19,604,083...19,733,721
Ensembl chrNW_004936471:19,703,236...19,733,686
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936706:122,939...139,506
Ensembl chrNW_004936706:128,133...141,276
JBrowse link
G LOC101955024 lanosterol 14-alpha demethylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531
JBrowse link
G LOC101957714 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:1,467,460...1,480,185
Ensembl chrNW_004936514:1,467,261...1,480,185
JBrowse link
G LOC101958515 apolipoprotein F acts_upstream_of_or_within ISO (MGI:5428098|PMID:22363685) MGI PMID:22363685 MGI:5428098 NCBI chrNW_004936646:764,689...766,265 JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962
JBrowse link
G LOC101962805 NADH-cytochrome b5 reductase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936718:552,369...564,195
Ensembl chrNW_004936718:549,938...564,195
JBrowse link
G LOC101963150 sterol 26-hydroxylase, mitochondrial involved_in ISO
IEA
RGD
TreeGrafter
PMID:2175615 GO_REF:0000118 RGD:1299597 NCBI chrNW_004936569:1,213,700...1,250,181
Ensembl chrNW_004936569:1,213,573...1,250,589
JBrowse link
G LOC101968373 cytochrome P450 11B3, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:9,034,177...9,039,486 JBrowse link
G LOC101970547 isopentenyl-diphosphate Delta-isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936518:10,541,992...10,542,792 JBrowse link
G LOC101970597 sulfotransferase 1C1 involved_in ISO (PMID:28992322) UniProt PMID:28992322 NCBI chrNW_004936729:1,783,124...1,796,723
Ensembl chrNW_004936729:1,783,105...1,796,740
JBrowse link
G LOC101970910 cytochrome P450 7A1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G LOC101975820 cholesterol side-chain cleavage enzyme, mitochondrial involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:33,367,810...33,380,764
Ensembl chrNW_004936471:33,367,810...33,380,764
JBrowse link
G LOC101978323 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:1,899,686...1,904,104
Ensembl chrNW_004936646:1,900,259...1,904,104
JBrowse link
G Lrp1 LDL receptor related protein 1 acts_upstream_of_or_within ISO (MGI:3762423|PMID:17920016) MGI PMID:17920016 MGI:3762423 NCBI chrNW_004936646:1,326,900...1,407,236
Ensembl chrNW_004936646:1,327,374...1,406,456
JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2448205|PMID:12509515) MGI
Ensembl
PMID:12509515 GO_REF:0000107 MGI:2448205 NCBI chrNW_004936599:1,746,309...1,814,471
Ensembl chrNW_004936599:1,746,406...1,814,321
JBrowse link
G Mvd mevalonate diphosphate decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936641:1,030,465...1,035,967
Ensembl chrNW_004936641:1,030,595...1,035,954
JBrowse link
G Mvk mevalonate kinase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936769:1,274,595...1,295,186
Ensembl chrNW_004936769:1,274,540...1,298,178
JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:13,265,269...13,279,164
Ensembl chrNW_004936490:13,266,347...13,279,206
JBrowse link
G Nsdhl NAD(P) dependent steroid dehydrogenase-like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1338572|PMID:10369263) MGI
Ensembl
PMID:10369263 GO_REF:0000107 MGI:1338572 NCBI chrNW_004936714:246,574...273,930
Ensembl chrNW_004936714:246,551...273,912
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3710922|PMID:17242417) MGI
Ensembl
UniProt
PMID:17242417 GO_REF:0000043 GO_REF:0000107 MGI:3710922 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917
JBrowse link
G Pctp phosphatidylcholine transfer protein acts_upstream_of_or_within ISO (MGI:3603484|PMID:15845870) MGI PMID:15845870 MGI:3603484 NCBI chrNW_004936490:6,902,959...6,929,051
Ensembl chrNW_004936490:6,902,957...6,929,098
JBrowse link
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:669,407...673,004
Ensembl chrNW_004936877:669,374...673,172
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5616959|PMID:25429154) MGI PMID:25429154 MGI:5616959 NCBI chrNW_004936724:1,747,015...1,780,298
Ensembl chrNW_004936724:1,747,005...1,778,141
JBrowse link
G Pmvk phosphomevalonate kinase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936580:4,473,554...4,482,396
Ensembl chrNW_004936580:4,473,359...4,482,631
JBrowse link
G Pon1 paraoxonase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1860864|PMID:9685159) MGI
Ensembl
PMID:9685159 GO_REF:0000107 MGI:1860864 NCBI chrNW_004936585:4,954,871...4,979,560
Ensembl chrNW_004936585:4,954,869...4,979,591
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936518:1,817,051...1,843,376
Ensembl chrNW_004936518:1,804,969...1,843,380
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936522:4,872,360...4,939,873
Ensembl chrNW_004936522:4,875,046...4,939,879
JBrowse link
G Scap SREBF chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934968|PMID:11358865) MGI
UniProt
Ensembl
PMID:11358865 GO_REF:0000043 GO_REF:0000107 MGI:1934968 NCBI chrNW_004936596:1,124,573...1,180,219
Ensembl chrNW_004936596:1,122,042...1,180,297
JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5320806|PMID:22383528) MGI
Ensembl
PMID:22383528 GO_REF:0000107 MGI:5320806 NCBI chrNW_004936842:448,315...452,557
Ensembl chrNW_004936842:447,991...452,630
JBrowse link
G Soat1 sterol O-acyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603484|PMID:15845870)
(PMID:9756919)
MGI
TreeGrafter
Ensembl
UniProt
PMID:9756919 PMID:15845870 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3603484 NCBI chrNW_004936481:9,614,605...9,669,705
Ensembl chrNW_004936481:9,616,850...9,669,705
JBrowse link
G Soat2 sterol O-acyltransferase 2 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1206070|PMID:9756919) RGD
TreeGrafter
UniProt
Ensembl
MGI
PMID:9756919 PMID:12217884 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:1206070 RGD:625687 NCBI chrNW_004936512:10,420,847...10,430,813
Ensembl chrNW_004936512:10,420,804...10,430,881
JBrowse link
G Sqle squalene epoxidase involved_in ISO
IEA
RGD
TreeGrafter
PMID:9300786 GO_REF:0000118 RGD:1625701 NCBI chrNW_004936470:22,726,793...22,752,429
Ensembl chrNW_004936470:22,725,888...22,752,500
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 ISO RGD PMID:18071061 RGD:1643359 NCBI chrNW_004936741:1,408,669...1,419,717
Ensembl chrNW_004936741:1,406,521...1,419,776
JBrowse link
G Star steroidogenic acute regulatory protein involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672
JBrowse link
G Sult2b1 sulfotransferase family 2B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,626,810...2,655,290
Ensembl chrNW_004936664:2,626,764...2,655,340
JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936599:4,253,725...4,258,198
Ensembl chrNW_004936599:4,253,735...4,258,071
JBrowse link
G Tnfsf4 TNF superfamily member 4 acts_upstream_of_or_within ISO (MGI:57200|PMID:3473481) MGI PMID:3473481 MGI:57200 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:5,434,912...5,487,354
Ensembl chrNW_004936498:5,434,911...5,447,147
JBrowse link
G Vldlr very low density lipoprotein receptor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936503:2,407,040...2,440,366
Ensembl chrNW_004936503:2,405,689...2,440,502
JBrowse link
ergosterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936489:11,255,871...11,273,848
Ensembl chrNW_004936489:11,255,871...11,283,216
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936549:1,378,536...1,400,501
Ensembl chrNW_004936549:1,378,736...1,400,532
JBrowse link
G Lbr lamin B receptor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:2,254,463...2,282,785
Ensembl chrNW_004936526:2,254,449...2,282,785
JBrowse link
G LOC101959426 NADH-cytochrome b5 reductase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:6,982,427...7,006,308
Ensembl chrNW_004936522:6,982,396...7,006,406
JBrowse link
G Lss lanosterol synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936778:323,120...351,100
Ensembl chrNW_004936778:323,014...351,102
JBrowse link
G Msmo1 methylsterol monooxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936555:664,171...678,082
Ensembl chrNW_004936555:664,158...678,208
JBrowse link
G Mvk mevalonate kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936769:1,274,595...1,295,186
Ensembl chrNW_004936769:1,274,540...1,298,178
JBrowse link
G Sc5d sterol-C5-desaturase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936542:6,046,425...6,062,825
Ensembl chrNW_004936542:6,046,390...6,059,074
JBrowse link
G Sigmar1 sigma non-opioid intracellular receptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:2,717,885...2,720,874
Ensembl chrNW_004936524:2,715,769...2,721,085
JBrowse link
G Sqle squalene epoxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:22,726,793...22,752,429
Ensembl chrNW_004936470:22,725,888...22,752,500
JBrowse link
isocitrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco2 aconitase 2 ISO RGD PMID:9712727 PMID:14674759 RGD:2306852 RGD:2306877 NCBI chrNW_004936492:407,482...452,538
Ensembl chrNW_004936492:407,482...452,537
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 involved_in ISO
IEA
RGD
TreeGrafter
InterPro
Ensembl
PMID:17447164 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1624966 NCBI chrNW_004936950:334,894...349,221
Ensembl chrNW_004936950:334,934...348,363
JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936483:15,845,777...15,864,341
Ensembl chrNW_004936483:15,845,792...15,864,341
JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:36,823,003...36,842,576
Ensembl chrNW_004936471:36,822,971...36,842,610
JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:16,033,287...16,038,097
Ensembl chrNW_004936485:16,033,128...16,042,821
JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936809:666,231...675,279
Ensembl chrNW_004936809:666,337...675,214
JBrowse link
G LOC101964695 isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936654:2,129,260...2,131,869 JBrowse link
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in ISO (PMID:1917954) RGD
BHF-UCL
PMID:1917954 PMID:9225228 RGD:10059686 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:80,583...116,027
Ensembl chrNW_004936636:80,564...116,694
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:1,193,679...1,210,059
Ensembl chrNW_004936710:1,193,411...1,210,739
JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 acts_upstream_of_or_within ISO (MGI:5490819|PMID:17202134) MGI PMID:17202134 MGI:5490819 NCBI chrNW_004936484:13,086,928...13,092,291
Ensembl chrNW_004936484:13,088,030...13,092,291
JBrowse link
G Sod1 superoxide dismutase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:10,345,154...10,352,873
Ensembl chrNW_004936500:10,345,154...10,352,867
JBrowse link
negative regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ch25h cholesterol 25-hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:5,015,922...5,016,942
Ensembl chrNW_004936601:5,015,219...5,160,908
JBrowse link
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:1,620,763...1,678,561
Ensembl chrNW_004936500:1,620,641...1,678,607
JBrowse link
G Abcg4 ATP binding cassette subfamily G member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,090,282...4,106,025
Ensembl chrNW_004936542:4,091,283...4,105,370
JBrowse link
G Fdps farnesyl diphosphate synthase ISO RGD PMID:18637708 RGD:2316295 NCBI chrNW_004936580:4,799,354...4,808,406 JBrowse link
G Fgf1 fibroblast growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:11,590,687...11,684,410
Ensembl chrNW_004936504:11,590,637...11,685,194
JBrowse link
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:19264869 RGD:2316785 NCBI chrNW_004936543:2,275,981...2,327,931
Ensembl chrNW_004936543:2,274,059...2,328,008
JBrowse link
G LOC101970910 cytochrome P450 7A1 involved_in ISO PMID:23536474 BHF-UCL PMID:23536474 RGD:13792517 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653
JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISO (MGI:6712091|PMID:33942715) UniProt PMID:33942715 MGI:6712091 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983
JBrowse link
G Scap SREBF chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:1,124,573...1,180,219
Ensembl chrNW_004936596:1,122,042...1,180,297
JBrowse link
G Scp2 sterol carrier protein 2 ISO RGD PMID:2554812 RGD:9850260 NCBI chrNW_004936522:8,004,503...8,110,995
Ensembl chrNW_004936522:8,005,442...8,110,889
JBrowse link
G Sec14l2 SEC14 like lipid binding 2 ISO RGD PMID:11226224 RGD:727312 NCBI chrNW_004936904:254,979...276,267
Ensembl chrNW_004936904:253,436...276,897
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1098057|PMID:9329978)
(MGI:3603730|PMID:16046411)
MGI
Ensembl
PMID:9329978 PMID:16046411 GO_REF:0000107 MGI:1098057 MGI:3603730 NCBI chrNW_004936741:1,408,669...1,419,717
Ensembl chrNW_004936741:1,406,521...1,419,776
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:12177166), (PMID:32322062)
(MGI:6712091|PMID:33942715), (MGI:6713934|PMID:34021134)
UniProt PMID:12177166 PMID:32322062 PMID:33942715 PMID:34021134 MGI:6712091 MGI:6713934 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775
JBrowse link
positive regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,111,055...2,112,626
Ensembl chrNW_004936542:2,111,052...2,112,854
JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:15654758)
(MGI:3850619|PMID:15654758)
BHF-UCL PMID:15654758 MGI:3850619 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Stard4 StAR related lipid transfer domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:5,865,840...5,877,591
Ensembl chrNW_004936531:5,866,021...5,877,597
JBrowse link
regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 NOT|involved_in ISO (PMID:21810484) ARUK-UCL PMID:21810484 NCBI chrNW_004936669:922,978...941,996
Ensembl chrNW_004936669:926,622...942,167
JBrowse link
G Apob apolipoprotein B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3652707|PMID:16455790) MGI
Ensembl
PMID:16455790 GO_REF:0000107 MGI:3652707 NCBI chrNW_004936493:10,509,118...10,549,144
Ensembl chrNW_004936493:10,509,118...10,549,144
JBrowse link
G Aqp8 aquaporin 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:9,430,872...9,438,182
Ensembl chrNW_004936501:9,430,775...9,436,813
JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:80,583...116,027
Ensembl chrNW_004936636:80,564...116,694
JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936710:1,193,679...1,210,059
Ensembl chrNW_004936710:1,193,411...1,210,739
JBrowse link
G LOC101971285 7-dehydrocholesterol reductase ISO RGD PMID:10329655 RGD:632010 NCBI chrNW_004936794:1,432,379...1,468,966 JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:800,197...852,659
Ensembl chrNW_004936709:799,961...851,585
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 acts_upstream_of_or_within ISO (MGI:3027293|PMID:14673138) MGI PMID:14673138 MGI:3027293 NCBI chrNW_004936702:1,573,616...1,626,323
Ensembl chrNW_004936702:1,573,650...1,591,004
JBrowse link
G Scap SREBF chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3770209|PMID:16054043) MGI
TreeGrafter
Ensembl
PMID:16054043 GO_REF:0000107 GO_REF:0000118 MGI:3770209 NCBI chrNW_004936596:1,124,573...1,180,219
Ensembl chrNW_004936596:1,122,042...1,180,297
JBrowse link
regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:1,620,763...1,678,561
Ensembl chrNW_004936500:1,620,641...1,678,607
JBrowse link
G Acadl acyl-CoA dehydrogenase long chain involved_in ISO (MGI:3526480|PMID:15639194) BHF-UCL PMID:15639194 MGI:3526480 NCBI chrNW_004936845:66,674...96,248
Ensembl chrNW_004936845:66,241...96,249
JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:514,883...520,223
Ensembl chrNW_004936595:514,534...520,223
JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:24412220) ARUK-UCL PMID:24412220 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Arv1 ARV1 homolog, fatty acid homeostasis modulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4849624|PMID:20663892) MGI
Ensembl
PMID:20663892 GO_REF:0000107 MGI:4849624 NCBI chrNW_004936484:19,551,293...19,562,132
Ensembl chrNW_004936484:19,551,293...19,562,138
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO RGD PMID:17526931 RGD:10400884 NCBI chrNW_004936498:4,514,212...4,544,523
Ensembl chrNW_004936498:4,514,184...4,544,527
JBrowse link
G Dgkq diacylglycerol kinase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,225,624...22,238,825
Ensembl chrNW_004936477:22,225,618...22,238,803
JBrowse link
G Ephx2 epoxide hydrolase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:350,357...392,919
Ensembl chrNW_004936675:350,342...392,551
JBrowse link
G Gnb3 G protein subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:970,169...977,059
Ensembl chrNW_004936709:970,172...976,863
JBrowse link
G Ldlr low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294
JBrowse link
G Lmf1 lipase maturation factor 1 acts_upstream_of_or_within ISO (MGI:55554|PMID:6857276) MGI PMID:6857276 MGI:55554 NCBI chrNW_004936501:138,470...200,120
Ensembl chrNW_004936501:140,661...204,127
JBrowse link
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:19264869 RGD:2316785 NCBI chrNW_004936543:2,275,981...2,327,931
Ensembl chrNW_004936543:2,274,059...2,328,008
JBrowse link
G LOC101967471 tetratricopeptide repeat protein 39B-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936508:12,457,898...12,460,235 JBrowse link
G Serpina12 serpin family A member 12 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5563627|PMID:22837305) MGI
Ensembl
PMID:22837305 GO_REF:0000107 MGI:5563627 NCBI chrNW_004936846:83,727...92,392
Ensembl chrNW_004936846:83,727...92,398
JBrowse link
G Thrb thyroid hormone receptor beta ISO RGD PMID:17878314 RGD:2315101 NCBI chrNW_004936473:15,766,214...15,986,389
Ensembl chrNW_004936473:15,770,146...15,986,561
JBrowse link
G Ttc39b tetratricopeptide repeat domain 39B involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936539:8,644,456...8,766,696
Ensembl chrNW_004936539:8,646,074...8,695,765
JBrowse link
vitamin D3 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:6282476|PMID:28798354) MGI PMID:28798354 MGI:6282476 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5548021|PMID:24259513) MGI
Ensembl
PMID:24259513 GO_REF:0000107 MGI:5548021 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (MGI:5548021|PMID:24259513) MGI PMID:24259513 MGI:5548021 NCBI chrNW_004936597:1,388,394...1,397,731
Ensembl chrNW_004936597:1,385,624...1,397,758
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15868
    metabolic process 9524
      small molecule metabolic process 1623
        alcohol metabolic process 322
          secondary alcohol metabolic process 139
            (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process + 0
            6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde 1
            acetoin metabolic process + 0
            asperfuranone metabolic process + 0
            butanediol metabolic process + 0
            cholesterol metabolic process + 124
            cyclohexanol metabolic process + 0
            ecdysone metabolic process + 0
            ergosterol metabolic process + 10
            isocitrate metabolic process 7
            menthol metabolic process + 0
            propan-2-ol metabolic process + 0
            secondary alcohol biosynthetic process + 55
            vitamin D3 metabolic process + 6
            zymosterol metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 15868
    metabolic process 9524
      organic substance metabolic process 9089
        organic hydroxy compound metabolic process 512
          alcohol metabolic process 322
            secondary alcohol metabolic process 139
              (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process + 0
              6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde 1
              acetoin metabolic process + 0
              asperfuranone metabolic process + 0
              butanediol metabolic process + 0
              cholesterol metabolic process + 124
              cyclohexanol metabolic process + 0
              ecdysone metabolic process + 0
              ergosterol metabolic process + 10
              isocitrate metabolic process 7
              menthol metabolic process + 0
              propan-2-ol metabolic process + 0
              secondary alcohol biosynthetic process + 55
              vitamin D3 metabolic process + 6
              zymosterol metabolic process + 0
paths to the root