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ONTOLOGY REPORT - ANNOTATIONS


Term:secondary alcohol metabolic process
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Accession:GO:1902652 term browser browse the term
Definition:The chemical reactions and pathways involving secondary alcohol.
Synonyms:exact_synonym: secondary alcohol metabolism



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6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RENBP renin binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:143,490,103...143,499,487
Ensembl chr  X:153,376,847...153,386,214
JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chr2B:106,042,235...106,076,840
Ensembl chr2B:224,637,238...224,671,474
JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA Ensembl
UniProt
GO_REF:0000107 GO_REF:0000117 NCBI chr12:31,158,814...31,164,462
Ensembl chr12:31,419,773...31,424,822
JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:14,960,651...14,989,083
Ensembl chr11:14,656,939...14,671,584
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401
JBrowse link
cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 acts_upstream_of_or_within ISO (MGI:2180727|PMID:8647961) MGI PMID:8647961 MGI:2180727 NCBI chr11:111,673,539...111,675,428
Ensembl chr11:115,606,136...115,608,122
JBrowse link
G CFTR CF transmembrane conductance regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3709533|PMID:17085523) MGI
Ensembl
PMID:17085523 GO_REF:0000107 MGI:3709533 NCBI chr 7:109,449,847...109,633,023
Ensembl chr 7:122,129,798...122,327,864
JBrowse link
G DHCR24 24-dehydrocholesterol reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2686848|PMID:14684813), (MGI:3624168|PMID:16321981), (MGI:3769949|PMID:16513830)
(PMID:11519011)
MGI
Ensembl
PMID:11519011 PMID:14684813 PMID:16321981 PMID:16513830 GO_REF:0000107 MGI:2686848 MGI:3624168 MGI:3769949 NCBI chr 1:54,126,170...54,163,713
Ensembl chr 1:55,714,693...55,754,698
JBrowse link
G DHCR7 7-dehydrocholesterol reductase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
Ensembl
PMID:9831636 PMID:10329655 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:2316918 RGD:632010 NCBI chr11:66,450,230...66,464,214
Ensembl chr11:69,721,741...69,735,715
JBrowse link
G EBP EBP cholestenol delta-isomerase involved_in ISO
IEA
RGD
TreeGrafter
PMID:11171067 GO_REF:0000118 RGD:628445 NCBI chr  X:40,820,042...40,826,957 JBrowse link
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:16440058 GO_REF:0000118 RGD:1626611 NCBI chr 8:7,363,250...7,399,863 JBrowse link
G G6PD glucose-6-phosphate dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,972,798...143,988,960
Ensembl chr  X:153,843,092...153,860,674
JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180727|PMID:8647961), (MGI:3603484|PMID:15845870), (MGI:70238|PMID:7798939) MGI
UniProt
Ensembl
PMID:7798939 PMID:8647961 PMID:15845870 GO_REF:0000043 GO_REF:0000107 MGI:2180727 MGI:3603484 MGI:70238 NCBI chr 5:39,936,630...39,961,519
Ensembl chr 5:40,548,919...40,573,785
JBrowse link
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:67,067,001...67,091,786
Ensembl chr 5:72,116,228...72,141,050
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:82,778,489...82,798,987
Ensembl chr 1:117,775,770...117,796,679
JBrowse link
G HSD17B7 hydroxysteroid 17-beta dehydrogenase 7 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:138,204,544...138,226,689 JBrowse link
G IDI1 isopentenyl-diphosphate delta isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:1,078,107...1,087,054
Ensembl chr10:1,124,920...1,133,234
JBrowse link
G IDI2 isopentenyl-diphosphate delta isomerase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:1,056,280...1,062,070
Ensembl chr10:1,102,655...1,108,246
JBrowse link
G INSIG1 insulin induced gene 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3689278|PMID:16955138) MGI
TreeGrafter
Ensembl
PMID:16955138 GO_REF:0000107 GO_REF:0000118 MGI:3689278 NCBI chr 7:146,893,730...146,906,329
Ensembl chr 7:158,619,531...158,632,012
JBrowse link
G INSIG2 insulin induced gene 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3689278|PMID:16955138) MGI
TreeGrafter
Ensembl
PMID:16955138 GO_REF:0000107 GO_REF:0000118 MGI:3689278 NCBI chr2B:5,046,971...5,068,757
Ensembl chr2B:118,632,402...118,652,647
JBrowse link
G LBR lamin B receptor involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:200,865,602...200,892,199
Ensembl chr 1:205,870,394...205,893,032
JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5702564|PMID:25147230), (MGI:6385435|PMID:29599133) MGI
Ensembl
PMID:25147230 PMID:29599133 GO_REF:0000107 MGI:5702564 MGI:6385435 NCBI chr10:85,938,240...85,976,610
Ensembl chr10:89,477,082...89,516,874
JBrowse link
G LOC100982559 NADH-cytochrome b5 reductase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:23,513,724...23,544,746
Ensembl chr22:41,666,548...41,694,104
JBrowse link
G LOC100985156 3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2673751|PMID:12829805) MGI
TreeGrafter
Ensembl
PMID:12829805 GO_REF:0000107 GO_REF:0000118 MGI:2673751 NCBI chr10:38,424,713...38,447,193
Ensembl chr 1:142,001,162...142,022,865
JBrowse link
G LSS lanosterol synthase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:1429550 PMID:16440058 GO_REF:0000107 GO_REF:0000118 RGD:1626611 RGD:2316919 NCBI chr21:32,535,564...32,571,379
Ensembl chr21:45,787,252...45,822,181
JBrowse link
G MVD mevalonate diphosphate decarboxylase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chr16:69,365,070...69,376,149
Ensembl chr16:89,025,572...89,036,964
JBrowse link
G MVK mevalonate kinase involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr12:107,150,477...107,173,978
Ensembl chr12:110,544,991...110,568,524
JBrowse link
G NPC1L1 NPC1 like intracellular cholesterol transporter 1 involved_in ISO (PMID:17140581) HGNC-UCL PMID:17140581 NCBI chr 7:45,227,289...45,256,094
Ensembl chr 7:45,297,271...45,324,692
JBrowse link
G PMVK phosphomevalonate kinase involved_in IEA UniProt
TreeGrafter
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:130,273,246...130,286,614
Ensembl chr 1:133,882,840...133,894,818
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:69,581,748...69,620,721
Ensembl chr 5:74,627,830...74,666,505
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:55,928,577...55,998,628
Ensembl chr 1:57,664,237...57,702,227
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 acts_upstream_of
involved_in
ISO
IEA
(MGI:1098057|PMID:9329978) MGI
Ensembl
PMID:9329978 GO_REF:0000107 MGI:1098057 NCBI chr17:33,458,196...33,484,643
Ensembl chr17:38,405,794...38,432,045
JBrowse link
G TM7SF2 transmembrane 7 superfamily member 2 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr11:60,473,934...60,478,579
Ensembl chr11:63,812,769...63,816,812
JBrowse link
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP51A1 cytochrome P450 family 51 subfamily A member 1 ISO RGD PMID:7581240 RGD:2316902 NCBI chr 7:84,110,130...84,132,870
Ensembl chr 7:97,708,806...97,729,824
JBrowse link
cholesterol biosynthetic process via desmosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHCR24 24-dehydrocholesterol reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:54,126,170...54,163,713
Ensembl chr 1:55,714,693...55,754,698
JBrowse link
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSMO1 methylsterol monooxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:157,523,099...157,538,508
Ensembl chr 4:169,606,809...169,622,212
JBrowse link
G SC5D sterol-C5-desaturase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7961720 GO_REF:0000118 RGD:2316911 NCBI chr11:116,139,979...116,160,745
Ensembl chr11:120,063,743...120,078,386
JBrowse link
cholesterol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1D1 aldo-keto reductase family 1 member D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:130,023,017...130,076,397
Ensembl chr 7:142,525,467...142,571,331
JBrowse link
G APOE apolipoprotein E acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1314982|PMID:9826706) MGI
TreeGrafter
Ensembl
PMID:9826706 GO_REF:0000107 GO_REF:0000118 MGI:1314982 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:106,042,235...106,076,840
Ensembl chr2B:224,637,238...224,671,474
JBrowse link
G CYP39A1 cytochrome P450 family 39 subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859119|PMID:10748047) MGI
Ensembl
PMID:10748047 GO_REF:0000107 MGI:1859119 NCBI chr 6:46,132,584...46,235,578
Ensembl chr 6:47,404,969...47,507,600
JBrowse link
G CYP46A1 cytochrome P450 family 46 subfamily A member 1 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:80,309,698...80,352,181
Ensembl chr14:99,628,511...99,671,218
JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933035|PMID:11279518), (MGI:3603484|PMID:15845870) MGI
Ensembl
InterPro
PMID:11279518 PMID:15845870 GO_REF:0000002 GO_REF:0000107 MGI:1933035 MGI:3603484 NCBI chr 8:54,942,509...54,952,500
Ensembl chr 8:56,593,799...56,604,037
JBrowse link
G HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 ISO RGD PMID:16081591 RGD:1599972 NCBI chr16:23,979,487...23,984,225
Ensembl chr16:31,352,322...31,356,803
JBrowse link
G SCARB1 scavenger receptor class B member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934548|PMID:11278646)
(MGI:3690692|PMID:10559220)
MGI
Ensembl
PMID:10559220 PMID:11278646 GO_REF:0000107 MGI:1934548 MGI:3690692 NCBI chr12:122,293,803...122,455,314
Ensembl chr12:126,659,532...126,694,767
JBrowse link
cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153573|PMID:11559713) MGI
Ensembl
PMID:11559713 GO_REF:0000107 MGI:2153573 NCBI chr 9:75,948,831...76,096,136
Ensembl chr 9:104,076,516...104,224,188
JBrowse link
G ABCA5 ATP binding cassette subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:63,172,670...63,255,587
Ensembl chr17:68,563,702...68,629,791
JBrowse link
G ABCG1 ATP binding cassette subfamily G member 1 involved_in ISO (PMID:15994327) BHF-UCL PMID:15994327 NCBI chr21:28,534,697...28,619,590
Ensembl chr21:41,839,115...41,933,050
JBrowse link
G ANGPTL3 angiopoietin like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:61,855,870...61,863,476
Ensembl chr 1:63,670,516...63,679,194
JBrowse link
G APLP2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (MGI:3762423|PMID:17920016) MGI PMID:17920016 MGI:3762423 NCBI chr11:124,881,191...124,944,472
Ensembl chr11:128,775,329...128,847,482
JBrowse link
G APOA1 apolipoprotein A1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1099137|PMID:9327769), (MGI:1339278|PMID:10357841), (MGI:3487338|PMID:15466405), (MGI:3688492|PMID:9795222), (MGI:3696597|PMID:17071966), (MGI:70854|PMID:7751823)
(MGI:3588626|PMID:15995171)
MGI
UniProt
PMID:7751823 PMID:9327769 PMID:9795222 PMID:10357841 PMID:15466405 More... GO_REF:0000043 MGI:1099137 MGI:1339278 MGI:3487338 MGI:3588626 MGI:3688492 MGI:3696597 MGI:70854 NCBI chr11:111,673,539...111,675,428
Ensembl chr11:115,606,136...115,608,122
JBrowse link
G APOA2 apolipoprotein A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1339279|PMID:10357838), (MGI:2180727|PMID:8647961) MGI
TreeGrafter
PMID:8647961 PMID:10357838 GO_REF:0000118 MGI:1339279 MGI:2180727 NCBI chr 1:136,634,754...136,636,122
Ensembl chr 1:140,546,591...140,547,959
JBrowse link
G APOA4 apolipoprotein A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:111,659,186...111,661,790
Ensembl chr11:115,591,788...115,594,382
JBrowse link
G APOB apolipoprotein B involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:20,986,464...21,029,004
Ensembl chr2A:21,100,356...21,145,129
JBrowse link
G APOC3 apolipoprotein C3 acts_upstream_of_or_within ISO (MGI:2152463|PMID:11590213), (MGI:69667|PMID:8089130)
(MGI:82330|PMID:8864964)
MGI PMID:8089130 PMID:8864964 PMID:11590213 MGI:2152463 MGI:69667 MGI:82330 NCBI chr11:111,667,816...111,670,861
Ensembl chr11:115,600,416...115,603,460
JBrowse link
G APOE apolipoprotein E acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180727|PMID:8647961), (MGI:51330|PMID:1423598) MGI
Ensembl
PMID:1423598 PMID:8647961 GO_REF:0000107 MGI:2180727 MGI:51330 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G APOF apolipoprotein F acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5428098|PMID:22363685) MGI
TreeGrafter
PMID:22363685 GO_REF:0000118 MGI:5428098 NCBI chr12:32,552,589...32,554,943
Ensembl chr12:32,806,130...32,807,641
JBrowse link
G APP amyloid beta precursor protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3762423|PMID:17920016) MGI
Ensembl
PMID:17920016 GO_REF:0000107 MGI:3762423 NCBI chr21:12,324,455...12,608,594
Ensembl chr21:25,684,355...25,995,072
JBrowse link
G CAT catalase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53683|PMID:5087482) MGI
Ensembl
PMID:5087482 GO_REF:0000107 MGI:53683 NCBI chr11:34,413,253...34,446,831
Ensembl chr11:34,289,603...34,323,160
JBrowse link
G CEBPA CCAAT enhancer binding protein alpha acts_upstream_of_or_within ISO (MGI:3847596|PMID:18974039) MGI PMID:18974039 MGI:3847596 NCBI chr19:30,223,567...30,226,204 JBrowse link
G CETP cholesteryl ester transfer protein involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr16:37,239,756...37,261,859
Ensembl chr16:56,374,363...56,396,103
JBrowse link
G CH25H cholesterol 25-hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1316846|PMID:9852097) MGI
TreeGrafter
Ensembl
PMID:9852097 GO_REF:0000107 GO_REF:0000118 MGI:1316846 NCBI chr10:85,930,638...85,932,065
Ensembl chr10:89,471,441...89,472,259
JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:47,156,583...47,215,805
Ensembl chr15:65,425,472...65,985,242
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:5,587,875...5,606,883
Ensembl chr 8:1,658,694...1,700,754
JBrowse link
G CYP11A1 cytochrome P450 family 11 subfamily A member 1 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr15:53,280,110...53,310,868
Ensembl chr15:72,901,286...72,931,164
JBrowse link
G CYP11B1 cytochrome P450 family 11 subfamily B member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:139,584,976...139,592,466
Ensembl chr 8:142,629,127...142,634,654
JBrowse link
G CYP11B2 cytochrome P450 family 11 subfamily B member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:139,622,632...139,630,014
Ensembl chr 8:142,666,534...142,672,575
JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:50,500,103...50,520,487
Ensembl chr20:51,721,685...51,742,716
JBrowse link
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:2175615 GO_REF:0000118 RGD:1299597 NCBI chr2B:106,042,235...106,076,840
Ensembl chr2B:224,637,238...224,671,474
JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:31,158,814...31,164,462
Ensembl chr12:31,419,773...31,424,822
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP51A1 cytochrome P450 family 51 subfamily A member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:84,110,130...84,132,870
Ensembl chr 7:97,708,806...97,729,824
JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:54,942,509...54,952,500
Ensembl chr 8:56,593,799...56,604,037
JBrowse link
G DHCR24 24-dehydrocholesterol reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3614236|PMID:16407971) MGI
Ensembl
PMID:16407971 GO_REF:0000107 MGI:3614236 NCBI chr 1:54,126,170...54,163,713
Ensembl chr 1:55,714,693...55,754,698
JBrowse link
G DHCR7 7-dehydrocholesterol reductase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:66,450,230...66,464,214
Ensembl chr11:69,721,741...69,735,715
JBrowse link
G EBP EBP cholestenol delta-isomerase involved_in ISO (PMID:10391219) GO_Central PMID:10391219 NCBI chr  X:40,820,042...40,826,957 JBrowse link
G ERLIN1 ER lipid raft associated 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr10:96,756,261...96,791,925
Ensembl chr10:100,238,320...100,273,942
JBrowse link
G ERLIN2 ER lipid raft associated 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 8:37,034,391...37,057,164
Ensembl chr 8:34,212,704...34,233,583
JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5447601|PMID:22912762)
(MGI:6282138|PMID:28053990)
MGI
Ensembl
PMID:22912762 PMID:28053990 GO_REF:0000107 MGI:5447601 MGI:6282138 NCBI chr 1:6,771,619...6,786,217
Ensembl chr 1:8,011,848...8,033,674
JBrowse link
G FDX1 ferredoxin 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:105,311,613...105,345,414 JBrowse link
G FDXR ferredoxin reductase involved_in IEA UniProt GO_REF:0000041 NCBI chr17:68,808,123...68,818,642
Ensembl chr17:74,364,343...74,374,852
JBrowse link
G FECH ferrochelatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1930023|PMID:11160364) MGI
Ensembl
PMID:11160364 GO_REF:0000107 MGI:1930023 NCBI chr18:50,934,520...50,977,132
Ensembl chr18:54,273,527...54,312,378
JBrowse link
G FGL1 fibrinogen like 1 acts_upstream_of_or_within ISO (MGI:5505372|PMID:23483972) MGI PMID:23483972 MGI:5505372 NCBI chr 8:17,083,524...17,128,152
Ensembl chr 8:14,035,855...14,066,956
JBrowse link
G GBA1 glucosylceramidase beta 1 involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851
JBrowse link
G GBA2 glucosylceramidase beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,587,876...35,599,971
Ensembl chr 9:36,390,409...36,402,949
JBrowse link
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:67,067,001...67,091,786
Ensembl chr 5:72,116,228...72,141,050
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:82,778,489...82,798,987
Ensembl chr 1:117,775,770...117,796,679
JBrowse link
G HNF1A HNF1 homeobox A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1933035|PMID:11279518) MGI
Ensembl
PMID:11279518 GO_REF:0000107 MGI:1933035 NCBI chr12:118,562,308...118,584,596
Ensembl chr12:121,932,671...121,955,911
JBrowse link
G IDI1 isopentenyl-diphosphate delta isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:1,078,107...1,087,054
Ensembl chr10:1,124,920...1,133,234
JBrowse link
G IDI2 isopentenyl-diphosphate delta isomerase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:1,056,280...1,062,070
Ensembl chr10:1,102,655...1,108,246
JBrowse link
G IL4 interleukin 4 involved_in ISO (MGI:2178917|PMID:11971948) UniProt PMID:11971948 MGI:2178917 NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581
JBrowse link
G INSIG1 insulin induced gene 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
UniProt
Ensembl
PMID:16100574 GO_REF:0000043 GO_REF:0000107 MGI:3603108 NCBI chr 7:146,893,730...146,906,329
Ensembl chr 7:158,619,531...158,632,012
JBrowse link
G INSIG2 insulin induced gene 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603108|PMID:16100574) MGI
Ensembl
UniProt
PMID:16100574 GO_REF:0000043 GO_REF:0000107 MGI:3603108 NCBI chr2B:5,046,971...5,068,757
Ensembl chr2B:118,632,402...118,652,647
JBrowse link
G LBR lamin B receptor involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:200,865,602...200,892,199
Ensembl chr 1:205,870,394...205,893,032
JBrowse link
G LCAT lecithin-cholesterol acyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:10559507)
(MGI:1096057|PMID:9300780)
RGD
UniProt
Ensembl
MGI
PMID:746355 PMID:9300780 PMID:10559507 GO_REF:0000043 GO_REF:0000107 MGI:1096057 RGD:1581789 NCBI chr16:48,278,137...48,285,305
Ensembl chr16:67,668,646...67,673,127
JBrowse link
G LDLR low density lipoprotein receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3696597|PMID:17071966) MGI
UniProt
Ensembl
PMID:17071966 GO_REF:0000043 GO_REF:0000107 MGI:3696597 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G LDLRAP1 low density lipoprotein receptor adaptor protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:24,809,535...24,852,394
Ensembl chr 1:25,878,358...25,903,336
JBrowse link
G LEP leptin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588626|PMID:15995171) MGI
Ensembl
PMID:15995171 GO_REF:0000107 MGI:3588626 NCBI chr 7:120,230,896...120,248,602
Ensembl chr 7:132,885,011...132,901,519
JBrowse link
G LEPR leptin receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588626|PMID:15995171) MGI
Ensembl
PMID:15995171 GO_REF:0000107 MGI:3588626 NCBI chr 1:64,772,612...64,881,886
Ensembl chr 1:66,693,926...66,764,768
JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5576805|PMID:24370824)
(MGI:6277301|PMID:30639734)
MGI
Ensembl
PMID:24370824 PMID:30639734 GO_REF:0000107 MGI:5576805 MGI:6277301 NCBI chr10:85,938,240...85,976,610
Ensembl chr10:89,477,082...89,516,874
JBrowse link
G LIPC lipase C, hepatic type acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1339279|PMID:10357838) MGI
Ensembl
PMID:10357838 GO_REF:0000107 MGI:1339279 NCBI chr15:37,363,507...37,537,723
Ensembl chr15:55,814,017...55,847,005
JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr19:39,289,162...39,315,067
Ensembl chr19:47,881,292...47,907,066
JBrowse link
G LOC100982559 NADH-cytochrome b5 reductase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:23,513,724...23,544,746
Ensembl chr22:41,666,548...41,694,104
JBrowse link
G LOC100988273 cytochrome P450 2D6-like involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chr22:23,022,449...23,031,627 JBrowse link
G LOC100994952 apolipoprotein C-I, acidic form acts_upstream_of_or_within ISO (MGI:70746|PMID:7848292) MGI PMID:7848292 MGI:70746 NCBI chr19:41,862,168...41,878,231 JBrowse link
G LRP1 LDL receptor related protein 1 acts_upstream_of_or_within ISO (MGI:3762423|PMID:17920016) MGI PMID:17920016 MGI:3762423 NCBI chr12:31,713,938...31,799,287
Ensembl chr12:31,966,149...32,051,979
JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2448205|PMID:12509515) MGI
Ensembl
PMID:12509515 GO_REF:0000107 MGI:2448205 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G MVD mevalonate diphosphate decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chr16:69,365,070...69,376,149
Ensembl chr16:89,025,572...89,036,964
JBrowse link
G MVK mevalonate kinase involved_in IEA UniProt GO_REF:0000043 NCBI chr12:107,150,477...107,173,978
Ensembl chr12:110,544,991...110,568,524
JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:9,476,482...9,489,661
Ensembl chr17:9,657,847...9,671,040
JBrowse link
G NSDHL NAD(P) dependent steroid dehydrogenase-like acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1338572|PMID:10369263) MGI
Ensembl
PMID:10369263 GO_REF:0000107 MGI:1338572 NCBI chr  X:142,405,340...142,443,723
Ensembl chr  X:152,324,553...152,362,931
JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3710922|PMID:17242417) MGI
UniProt
Ensembl
PMID:17242417 GO_REF:0000043 GO_REF:0000107 MGI:3710922 NCBI chr 1:54,323,036...54,355,397
Ensembl chr 1:55,911,016...55,936,456
JBrowse link
G PCTP phosphatidylcholine transfer protein acts_upstream_of_or_within ISO (MGI:3603484|PMID:15845870) MGI PMID:15845870 MGI:3603484 NCBI chr17:49,834,065...49,928,134
Ensembl chr17:54,696,803...54,770,244
JBrowse link
G PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:1,332,403...1,336,157
Ensembl chr14:19,384,634...19,388,140
JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (MGI:5616959|PMID:25429154) MGI PMID:25429154 MGI:5616959 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872
JBrowse link
G PMVK phosphomevalonate kinase involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:130,273,246...130,286,614
Ensembl chr 1:133,882,840...133,894,818
JBrowse link
G PON1 paraoxonase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1860864|PMID:9685159) MGI
Ensembl
PMID:9685159 GO_REF:0000107 MGI:1860864 NCBI chr 7:87,253,476...87,279,650
Ensembl chr 7:100,841,286...100,867,493
JBrowse link
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:69,581,748...69,620,721
Ensembl chr 5:74,627,830...74,666,505
JBrowse link
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:55,928,577...55,998,628
Ensembl chr 1:57,664,237...57,702,227
JBrowse link
G SAA1 serum amyloid A1 acts_upstream_of_or_within ISO (MGI:1096057|PMID:9300780) MGI PMID:9300780 MGI:1096057 NCBI chr11:18,301,367...18,305,137
Ensembl chr11:17,986,725...17,990,414
JBrowse link
G SCAP SREBF chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1934968|PMID:11358865) MGI
UniProt
Ensembl
PMID:11358865 GO_REF:0000043 GO_REF:0000107 MGI:1934968 NCBI chr 3:47,314,535...47,379,455
Ensembl chr 3:48,414,012...48,479,845
JBrowse link
G SMPD1 sphingomyelin phosphodiesterase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5320806|PMID:22383528) MGI
Ensembl
PMID:22383528 GO_REF:0000107 MGI:5320806 NCBI chr11:6,521,812...6,526,349 JBrowse link
G SOAT1 sterol O-acyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603484|PMID:15845870)
(PMID:9756919)
MGI
TreeGrafter
UniProt
Ensembl
PMID:9756919 PMID:15845870 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:3603484 NCBI chr 1:154,776,305...154,840,594
Ensembl chr 1:158,464,886...158,524,909
JBrowse link
G SOAT2 sterol O-acyltransferase 2 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1206070|PMID:9756919) RGD
TreeGrafter
Ensembl
UniProt
MGI
PMID:9756919 PMID:12217884 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:1206070 RGD:625687 NCBI chr12:35,632,018...35,653,227
Ensembl chr12:36,413,954...36,434,074
JBrowse link
G SQLE squalene epoxidase involved_in ISO
IEA
RGD
TreeGrafter
PMID:9300786 GO_REF:0000118 RGD:1625701 NCBI chr 8:121,684,269...121,708,131
Ensembl chr 8:124,435,668...124,459,441
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 ISO RGD PMID:18071061 RGD:1643359 NCBI chr17:33,458,196...33,484,643
Ensembl chr17:38,405,794...38,432,045
JBrowse link
G STAR steroidogenic acute regulatory protein involved_in IEA UniProt GO_REF:0000041 NCBI chr 8:37,446,334...37,454,102
Ensembl chr 8:34,623,201...34,629,544
JBrowse link
G SULT2A1 sulfotransferase family 2A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:44,864,747...44,880,688
Ensembl chr19:53,517,248...53,532,573
JBrowse link
G SULT2B1 sulfotransferase family 2B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:45,576,770...45,601,839
Ensembl chr19:54,146,574...54,192,407
JBrowse link
G TM7SF2 transmembrane 7 superfamily member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:60,473,934...60,478,579
Ensembl chr11:63,812,769...63,816,812
JBrowse link
G TNFSF4 TNF superfamily member 4 acts_upstream_of_or_within ISO (MGI:57200|PMID:3473481) MGI PMID:3473481 MGI:57200 NCBI chr 1:148,684,689...148,989,775
Ensembl chr 1:152,391,450...152,415,845
Ensembl chr 1:152,391,450...152,415,845
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973
JBrowse link
G VLDLR very low density lipoprotein receptor involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:2,428,639...2,463,796
Ensembl chr 9:2,621,199...2,653,980
JBrowse link
ergosterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT2 acetyl-CoA acetyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:157,644,894...157,661,965
Ensembl chr 6:162,656,497...162,673,606
JBrowse link
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:7,363,250...7,399,863 JBrowse link
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:39,936,630...39,961,519
Ensembl chr 5:40,548,919...40,573,785
JBrowse link
G LBR lamin B receptor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:200,865,602...200,892,199
Ensembl chr 1:205,870,394...205,893,032
JBrowse link
G LOC100977118 NADH-cytochrome b5 reductase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:53,442,480...53,476,136
Ensembl chr 1:55,042,138...55,065,899
JBrowse link
G LSS lanosterol synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:32,535,564...32,571,379
Ensembl chr21:45,787,252...45,822,181
JBrowse link
G MSMO1 methylsterol monooxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:157,523,099...157,538,508
Ensembl chr 4:169,606,809...169,622,212
JBrowse link
G MVK mevalonate kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:107,150,477...107,173,978
Ensembl chr12:110,544,991...110,568,524
JBrowse link
G SC5D sterol-C5-desaturase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:116,139,979...116,160,745
Ensembl chr11:120,063,743...120,078,386
JBrowse link
G SQLE squalene epoxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:121,684,269...121,708,131
Ensembl chr 8:124,435,668...124,459,441
JBrowse link
isocitrate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO2 aconitase 2 ISO RGD PMID:9712727 PMID:14674759 RGD:2306852 RGD:2306877 NCBI chr22:22,363,178...22,423,041
Ensembl chr22:40,450,276...40,510,200
JBrowse link
G IDH1 isocitrate dehydrogenase (NADP(+)) 1 involved_in ISO
IEA
RGD
TreeGrafter
InterPro
Ensembl
PMID:17447164 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1624966 NCBI chr2B:95,475,320...95,494,286
Ensembl chr2B:213,599,036...213,617,175
JBrowse link
G IDH2 isocitrate dehydrogenase (NADP(+)) 2 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr15:68,771,050...68,790,523
Ensembl chr15:87,972,889...87,991,276
JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:57,078,588...57,099,934
Ensembl chr15:76,043,311...76,064,634
JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:2,766,598...2,772,571
Ensembl chr20:2,529,510...2,535,570
JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:143,336,460...143,345,274
Ensembl chr  X:153,222,309...153,231,135
JBrowse link
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E involved_in ISO
IEA
RGD
Ensembl
PMID:9225228 GO_REF:0000107 RGD:10059686 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G ERLIN1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,756,261...96,791,925
Ensembl chr10:100,238,320...100,273,942
JBrowse link
G ERLIN2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:37,034,391...37,057,164
Ensembl chr 8:34,212,704...34,233,583
JBrowse link
G IDI2 isopentenyl-diphosphate delta isomerase 2 acts_upstream_of_or_within ISO (MGI:5490819|PMID:17202134) MGI PMID:17202134 MGI:5490819 NCBI chr10:1,056,280...1,062,070
Ensembl chr10:1,102,655...1,108,246
JBrowse link
G SOD1 superoxide dismutase 1 involved_in ISO (PMID:15473258) UniProt PMID:15473258 NCBI chr21:18,029,831...18,037,526 JBrowse link
negative regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CH25H cholesterol 25-hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:85,930,638...85,932,065
Ensembl chr10:89,471,441...89,472,259
JBrowse link
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCG1 ATP binding cassette subfamily G member 1 involved_in ISO (MGI:3768186|PMID:17916878) BHF-UCL PMID:17916878 MGI:3768186 NCBI chr21:28,534,697...28,619,590
Ensembl chr21:41,839,115...41,933,050
JBrowse link
G ABCG4 ATP binding cassette subfamily G member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:113,987,709...114,001,354
Ensembl chr11:117,916,043...117,929,636
JBrowse link
G CYP7A1 cytochrome P450 family 7 subfamily A member 1 involved_in ISO PMID:23536474 BHF-UCL PMID:23536474 RGD:13792517 NCBI chr 8:54,942,509...54,952,500
Ensembl chr 8:56,593,799...56,604,037
JBrowse link
G FDPS farnesyl diphosphate synthase ISO RGD PMID:18637708 RGD:2316295 NCBI chr 1:130,653,316...130,665,196
Ensembl chr 1:134,258,968...134,270,237
JBrowse link
G FGF1 fibroblast growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:137,949,100...138,054,553
Ensembl chr 5:144,056,387...144,078,001
JBrowse link
G LOC100990437 NADPH--cytochrome P450 reductase ISO RGD PMID:19264869 RGD:2316785 NCBI chr 7:68,035,021...68,105,934
Ensembl chr 7:82,364,418...82,437,530
JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:6712091|PMID:33942715) UniProt PMID:33942715 MGI:6712091 NCBI chr 6:161,361,413...161,523,414 JBrowse link
G SCAP SREBF chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:47,314,535...47,379,455
Ensembl chr 3:48,414,012...48,479,845
JBrowse link
G SCP2 sterol carrier protein 2 ISO RGD PMID:2554812 RGD:9850260 NCBI chr 1:52,195,491...52,324,227
Ensembl chr 1:53,797,254...53,924,939
JBrowse link
G SEC14L2 SEC14 like lipid binding 2 ISO RGD PMID:11226224 RGD:727312 NCBI chr22:11,432,608...11,460,973
Ensembl chr22:29,234,162...29,261,937
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3603730|PMID:16046411)
(MGI:1098057|PMID:9329978)
MGI
Ensembl
PMID:9329978 PMID:16046411 GO_REF:0000107 MGI:1098057 MGI:3603730 NCBI chr17:33,458,196...33,484,643
Ensembl chr17:38,405,794...38,432,045
JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:22,725,790...22,799,749
Ensembl chr22:40,811,459...40,884,947
JBrowse link
positive regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOA1 apolipoprotein A1 involved_in ISO (PMID:4335615) BHF-UCL PMID:4335615 NCBI chr11:111,673,539...111,675,428
Ensembl chr11:115,606,136...115,608,122
JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G STARD4 StAR related lipid transfer domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:106,855,990...106,873,384
Ensembl chr 5:112,657,516...112,675,165
JBrowse link
regulation of cholesterol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA2 ATP binding cassette subfamily A member 2 NOT|involved_in ISO (PMID:21810484) ARUK-UCL PMID:21810484 NCBI chr 9:108,067,633...108,089,742
Ensembl chr 9:137,036,696...137,057,776
JBrowse link
G APOB apolipoprotein B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3652707|PMID:16455790) MGI
Ensembl
PMID:16455790 GO_REF:0000107 MGI:3652707 NCBI chr2A:20,986,464...21,029,004
Ensembl chr2A:21,100,356...21,145,129
JBrowse link
G AQP8 aquaporin 8 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:25,458,165...25,469,713 JBrowse link
G DHCR7 7-dehydrocholesterol reductase ISO RGD PMID:10329655 RGD:632010 NCBI chr11:66,450,230...66,464,214
Ensembl chr11:69,721,741...69,735,715
JBrowse link
G ERLIN1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,756,261...96,791,925
Ensembl chr10:100,238,320...100,273,942
JBrowse link
G ERLIN2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:37,034,391...37,057,164
Ensembl chr 8:34,212,704...34,233,583
JBrowse link
G LPCAT3 lysophosphatidylcholine acyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,107,925...7,149,982
Ensembl chr12:7,024,015...7,065,945
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 acts_upstream_of_or_within ISO (MGI:3027293|PMID:14673138) MGI PMID:14673138 MGI:3027293 NCBI chr 8:73,508,349...73,526,560
Ensembl chr 8:75,146,255...75,147,172
JBrowse link
G SCAP SREBF chaperone acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3770209|PMID:16054043) MGI
TreeGrafter
Ensembl
PMID:16054043 GO_REF:0000107 GO_REF:0000118 MGI:3770209 NCBI chr 3:47,314,535...47,379,455
Ensembl chr 3:48,414,012...48,479,845
JBrowse link
regulation of cholesterol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCG1 ATP binding cassette subfamily G member 1 involved_in ISO (MGI:3852307|PMID:16556852) BHF-UCL PMID:16556852 MGI:3852307 NCBI chr21:28,534,697...28,619,590
Ensembl chr21:41,839,115...41,933,050
JBrowse link
G ACADL acyl-CoA dehydrogenase long chain involved_in ISO (MGI:3526480|PMID:15639194) BHF-UCL PMID:15639194 MGI:3526480 NCBI chr2B:97,445,421...97,483,514
Ensembl chr2B:215,847,775...215,885,524
JBrowse link
G ACADVL acyl-CoA dehydrogenase very long chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,249,717...7,255,165
Ensembl chr17:7,234,283...7,242,417
JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G ARV1 ARV1 homolog, fatty acid homeostasis modulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4849624|PMID:20663892) MGI
Ensembl
PMID:20663892 GO_REF:0000107 MGI:4849624 NCBI chr 1:206,527,777...206,549,606
Ensembl chr 1:211,554,553...211,576,484
JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 ISO RGD PMID:17526931 RGD:10400884 NCBI chr11:70,824,791...70,857,530
Ensembl chr11:74,126,169...74,158,854
JBrowse link
G DGKQ diacylglycerol kinase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,075,133...1,090,081
Ensembl chr 4:994,985...1,007,724
JBrowse link
G EPHX2 epoxide hydrolase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,761,090...26,818,436
Ensembl chr 8:23,964,094...24,017,749
JBrowse link
G FMO5 flavin containing dimethylaniline monoxygenase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:122,605,677...122,648,325
Ensembl chr 1:112,881,859...112,921,194
JBrowse link
G GNB3 G protein subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,971,854...6,979,214
Ensembl chr12:6,883,280...6,890,692
JBrowse link
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791
JBrowse link
G LMF1 lipase maturation factor 1 acts_upstream_of_or_within ISO (MGI:55554|PMID:6857276) MGI PMID:6857276 MGI:55554 Ensembl chr16:869,449...973,456 JBrowse link
G LOC100990437 NADPH--cytochrome P450 reductase ISO RGD PMID:19264869 RGD:2316785 NCBI chr 7:68,035,021...68,105,934
Ensembl chr 7:82,364,418...82,437,530
JBrowse link
G SERPINA12 serpin family A member 12 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5563627|PMID:22837305) MGI
Ensembl
PMID:22837305 GO_REF:0000107 MGI:5563627 NCBI chr14:75,110,414...75,141,569
Ensembl chr14:94,442,931...94,473,779
JBrowse link
G THRB thyroid hormone receptor beta ISO RGD PMID:17878314 RGD:2315101 NCBI chr 3:24,024,025...24,401,024
Ensembl chr 3:24,346,824...24,564,960
JBrowse link
G TTC39B tetratricopeptide repeat domain 39B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:14,994,729...15,127,877
Ensembl chr 9:15,502,811...15,633,374
JBrowse link
vitamin D3 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:6282476|PMID:28798354) MGI PMID:28798354 MGI:6282476 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5548021|PMID:24259513) MGI
Ensembl
PMID:24259513 GO_REF:0000107 MGI:5548021 NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (MGI:5548021|PMID:24259513) MGI PMID:24259513 MGI:5548021 NCBI chr 5:172,386,443...172,400,271
Ensembl chr 5:179,454,995...179,467,605
JBrowse link
G LOC100975751 UDP-glucuronosyltransferase 1A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:120,900,855...121,028,232
Ensembl chr2B:239,755,364...239,900,135
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16295
    metabolic process 10166
      small molecule metabolic process 1650
        alcohol metabolic process 343
          secondary alcohol metabolic process 144
            (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process + 0
            6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde 1
            acetoin metabolic process + 0
            asperfuranone metabolic process + 0
            butanediol metabolic process + 0
            cholesterol metabolic process + 129
            cyclohexanol metabolic process + 0
            ecdysone metabolic process + 0
            ergosterol metabolic process + 10
            isocitrate metabolic process 6
            menthol metabolic process + 0
            propan-2-ol metabolic process + 0
            secondary alcohol biosynthetic process + 54
            vitamin D3 metabolic process + 8
            zymosterol metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 16295
    metabolic process 10166
      organic substance metabolic process 9728
        organic hydroxy compound metabolic process 538
          alcohol metabolic process 343
            secondary alcohol metabolic process 144
              (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process + 0
              6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde 1
              acetoin metabolic process + 0
              asperfuranone metabolic process + 0
              butanediol metabolic process + 0
              cholesterol metabolic process + 129
              cyclohexanol metabolic process + 0
              ecdysone metabolic process + 0
              ergosterol metabolic process + 10
              isocitrate metabolic process 6
              menthol metabolic process + 0
              propan-2-ol metabolic process + 0
              secondary alcohol biosynthetic process + 54
              vitamin D3 metabolic process + 8
              zymosterol metabolic process + 0
paths to the root