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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of mRNA catabolic process
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Accession:GO:1902373 term browser browse the term
Definition:Any process that stops, prevents or reduces the frequency, rate or extent of mRNA catabolic process.
Synonyms:exact_synonym: down regulation of mRNA breakdown;   down regulation of mRNA catabolic process;   down regulation of mRNA catabolism;   down regulation of mRNA degradation;   downregulation of mRNA breakdown;   downregulation of mRNA catabolic process;   downregulation of mRNA catabolism;   downregulation of mRNA degradation;   negative regulation of mRNA breakdown;   negative regulation of mRNA catabolism;   negative regulation of mRNA degradation
 narrow_synonym: inhibition of mRNA breakdown;   inhibition of mRNA catabolic process;   inhibition of mRNA catabolism;   inhibition of mRNA degradation
 related_synonym: down regulation of mRNA decay;   downregulation of mRNA decay;   inhibition of mRNA decay;   negative regulation of mRNA decay


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negative regulation of mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
G Pkp1 plakophilin 1 JBrowse link 13 52,705,174 52,753,089 RGD:1624291
G Pkp3 plakophilin 3 JBrowse link 1 213,884,795 213,897,783 RGD:1624291
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Angel2 angel homolog 2 JBrowse link 13 109,505,021 109,520,976 RGD:1624291
RGD:13792537
G Boll boule homolog, RNA binding protein JBrowse link 9 61,836,517 61,975,640 RGD:13792537
G Dazl deleted in azoospermia-like JBrowse link 9 12,633,983 12,651,017 RGD:13792537
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1600115
RGD:1624291
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:1624291
RGD:1600115
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 RGD:1624291
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
G LOC108348134 protein boule-like JBrowse link 9 64,447,890 64,573,812 RGD:13792537
G LOC681410 hypothetical protein LOC681410 JBrowse link 17 6,909,166 6,912,145 RGD:1600115
G Mapkapk2 MAPK activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:10045987
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1624291
RGD:1600115
G Rbm38 RNA binding motif protein 38 JBrowse link 3 171,037,891 171,050,500 RGD:1624291
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
G Tirap TIR domain containing adaptor protein JBrowse link 8 36,382,029 36,399,625 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
CRD-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:13792537
RGD:1624291
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:1600115
RGD:13792537
RGD:1624291
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1624291
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:1624291
RGD:1600115
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Dnd1 DND microRNA-mediated repression inhibitor 1 JBrowse link 18 29,608,588 29,611,212 RGD:13792537
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:1624291
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1624291
RGD:1600115
G Fus FUS RNA binding protein JBrowse link 1 199,412,805 199,426,705 RGD:1624291
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:1624291
RGD:1600115
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1357938
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Mapkapk2 MAPK activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
G Meioc meiosis specific with coiled-coil domain JBrowse link 10 90,622,954 90,641,883 RGD:1624291
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:10040969
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:10045995
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rbm46 RNA binding motif protein 46 JBrowse link 2 181,828,931 181,874,223 RGD:1624291
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1624291
RGD:1600115
G Taf15 TATA-box binding protein associated factor 15 JBrowse link 10 70,689,863 70,721,892 RGD:1624291
G Tent5a terminal nucleotidyltransferase 5A JBrowse link 8 92,935,474 92,942,267 RGD:13792537
G Tent5b terminal nucleotidyltransferase 5B JBrowse link 5 151,692,068 151,699,381 RGD:13792537
G Tent5c terminal nucleotidyltransferase 5C JBrowse link 2 202,797,766 202,816,562 RGD:1600115
RGD:13792537
RGD:1624291
G Tent5d terminal nucleotidyltransferase 5D JBrowse link X 78,911,641 78,994,467 RGD:13792537
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1580563
G Vip vasoactive intestinal peptide JBrowse link 1 42,169,307 42,177,582 RGD:1600115
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
G Ybx2 Y box binding protein 2 JBrowse link 10 56,546,689 56,552,339 RGD:1624291
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:1624291
G Nbas NBAS subunit of NRZ tethering complex JBrowse link 6 38,474,773 38,777,146 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Secisbp2 SECIS binding protein 2 JBrowse link 17 13,555,348 13,586,595 RGD:1624291
RGD:1600115
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:1624291
RGD:1600115
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      positive regulation of metabolic process 4051
        positive regulation of macromolecule metabolic process 3737
          positive regulation of gene expression 2499
            negative regulation of mRNA catabolic process 59
              mRNA stabilization + 51
              negative regulation of mitochondrial mRNA catabolic process 0
              negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 3
              negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA catabolic process 261
                  mRNA catabolic process 225
                    regulation of mRNA catabolic process 129
                      negative regulation of mRNA catabolic process 59
                        mRNA stabilization + 51
                        negative regulation of mitochondrial mRNA catabolic process 0
                        negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 3
                        negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.