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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of chromatin organization
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Accession:GO:1902275 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of chromatin organization.
Synonyms:exact_synonym: regulation of chromatin organisation;   regulation of establishment or maintenance of chromatin architecture
 related_synonym: regulation of chromatin assembly or disassembly;   regulation of chromatin assembly/disassembly;   regulation of chromatin modification
 alt_id: GO:0001672;   GO:1903308


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regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IMP
IEA		 (PMID:28622508) UniProt
TreeGrafter		 PMID:28622508 GO_REF:0000118 NCBI chr 1:244,850,297...244,864,543
Ensembl chr 1:244,840,638...244,864,560 		JBrowse link
G LSM11 LSM11, U7 small nuclear RNA associated involved_in IMP (PMID:33230297) UniProt PMID:33230297 NCBI chr 5:157,743,712...157,760,709
Ensembl chr 5:157,743,712...157,760,709 		JBrowse link
G MBD3L2 methyl-CpG binding domain protein 3 like 2 involved_in IDA (PMID:15701600) UniProt PMID:15701600 NCBI chr19:7,049,321...7,051,735
Ensembl chr19:7,049,321...7,051,735 		JBrowse link
G MKI67 marker of proliferation Ki-67 involved_in ISS UniProt GO_REF:0000024 NCBI chr10:128,096,659...128,126,423
Ensembl chr10:128,096,659...128,126,423 		JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in IMP (PMID:31776511) UniProt PMID:31776511 NCBI chr 9:20,341,669...20,622,499
Ensembl chr 9:20,341,669...20,622,499 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:22862948) MGI PMID:22862948 NCBI chr 1:18,630,846...18,748,866
Ensembl chr 1:18,630,846...18,748,866 		JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase involved_in IDA (PMID:27141965) ParkinsonsUK-UCL PMID:27141965 NCBI chr16:30,957,754...30,984,664
Ensembl chr16:30,957,294...30,984,664 		JBrowse link
G SETD5 SET domain containing 5 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:9,397,615...9,478,154
Ensembl chr 3:9,397,615...9,479,240 		JBrowse link
G SSRP1 structure specific recognition protein 1 involved_in IDA
IBA		 (PMID:27467129) CACAO
GO_Central		 PMID:27467129 GO_REF:0000033 NCBI chr11:57,325,988...57,335,892
Ensembl chr11:57,325,986...57,335,892 		JBrowse link
G TLK1 tousled like kinase 1 involved_in IDA (PMID:12660173) UniProt PMID:12660173 NCBI chr 2:170,990,823...171,231,293
Ensembl chr 2:170,990,823...171,231,314 		JBrowse link
G TLK2 tousled like kinase 2 involved_in IDA (PMID:12660173) UniProt PMID:12660173 NCBI chr17:62,470,914...62,615,481
Ensembl chr17:62,458,658...62,615,481 		JBrowse link
negative regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JPX JPX transcript, XIST activator involved_in IMP (PMID:34856126) FlyBase PMID:34856126 NCBI chr  X:73,944,324...74,070,384
Ensembl chr  X:73,944,182...74,070,408 		JBrowse link
negative regulation of DNA methylation-dependent heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3L DNA methyltransferase 3 like involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr21:44,246,339...44,261,897
Ensembl chr21:44,246,339...44,262,216 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in IDA (PMID:24820035) GO_Central PMID:24820035 NCBI chr21:37,365,573...37,526,358
Ensembl chr21:37,365,573...37,526,358 		JBrowse link
G KMT2A lysine methyltransferase 2A involved_in IMP (PMID:20010842) UniProt PMID:20010842 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,456...118,526,832 		JBrowse link
negative regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RLF RLF zinc finger acts_upstream_of_or_within ISO (PMID:25857663) MGI PMID:25857663 NCBI chr 1:40,161,387...40,240,921
Ensembl chr 1:40,161,387...40,240,921 		JBrowse link
negative regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 involved_in IMP (PMID:20129925) UniProt PMID:20129925 NCBI chr 9:93,576,584...93,679,587
Ensembl chr 9:93,576,584...93,679,587 		JBrowse link
G PHF8 PHD finger protein 8 involved_in IDA (PMID:20208542) UniProt PMID:20208542 NCBI chr  X:53,936,680...54,048,936
Ensembl chr  X:53,936,676...54,048,958 		JBrowse link
positive regulation of chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in IMP (PMID:20855495) BHF-UCL PMID:20855495 NCBI chr 1:47,216,290...47,232,335
Ensembl chr 1:47,216,290...47,232,225 		JBrowse link
positive regulation of DNA methylation-dependent heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein involved_in IMP
IBA
IEA		 (PMID:27732843) UniProt
GO_Central
TreeGrafter		 PMID:27732843 GO_REF:0000033 GO_REF:0000118 NCBI chr12:14,365,682...14,502,930
Ensembl chr12:14,365,676...14,502,931 		JBrowse link
G ATF7IP2 activating transcription factor 7 interacting protein 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:10,386,061...10,483,638
Ensembl chr16:10,326,434...10,483,638 		JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IDA (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chr22:30,925,130...30,968,774
Ensembl chr22:30,925,130...30,968,774 		JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 involved_in IDA (PMID:28581500), (PMID:29211708) UniProt PMID:28581500 PMID:29211708 NCBI chr13:19,633,659...19,673,441
Ensembl chr13:19,633,659...19,673,441 		JBrowse link
G PPHLN1 periphilin 1 involved_in IDA (PMID:28581500) UniProt PMID:28581500 NCBI chr12:42,326,167...42,448,621
Ensembl chr12:42,238,447...42,459,715 		JBrowse link
G RESF1 retroelement silencing factor 1 involved_in ISS
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr12:31,959,415...31,993,107
Ensembl chr12:31,959,370...31,993,107 		JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 involved_in IMP
IBA
ISS		 (PMID:24623306), (PMID:27732843) UniProt
GO_Central		 PMID:24623306 PMID:27732843 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:150,926,263...150,964,737
Ensembl chr 1:150,926,263...150,964,744 		JBrowse link
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:49,444,274...49,495,003
Ensembl chr13:49,444,274...49,495,003 		JBrowse link
G TASOR transcription activation suppressor involved_in IDA
IBA		 (PMID:28581500), (PMID:29211708) UniProt
GO_Central		 PMID:28581500 PMID:29211708 GO_REF:0000033 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,132...56,683,265 		JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISS
IEA
IMP		 (PMID:24623306) UniProt
Ensembl		 PMID:24623306 GO_REF:0000024 GO_REF:0000107 NCBI chr19:58,544,064...58,550,715
Ensembl chr19:58,544,064...58,550,722 		JBrowse link
G ZNF304 zinc finger protein 304 involved_in IMP (PMID:24623306) UniProt PMID:24623306 NCBI chr19:57,351,271...57,359,898
Ensembl chr19:57,351,271...57,359,898 		JBrowse link
positive regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in IDA (PMID:20935635) UniProt PMID:20935635 NCBI chr12:55,966,830...55,972,789
Ensembl chr12:55,966,781...55,972,789 		JBrowse link
G TPR translocated promoter region, nuclear basket protein involved_in IMP (PMID:20407419) UniProt PMID:20407419 NCBI chr 1:186,311,652...186,375,253
Ensembl chr 1:186,311,652...186,375,693 		JBrowse link
regulation of DNA methylation-dependent heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM1A lysine demethylase 1A involved_in IDA (PMID:33980486) UniProt PMID:33980486 NCBI chr 1:23,019,468...23,083,689
Ensembl chr 1:23,019,443...23,083,689 		JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 involved_in IDA (PMID:33980486) UniProt PMID:33980486 NCBI chr 6:130,018,581...130,141,438
Ensembl chr 6:130,013,699...130,141,449 		JBrowse link
G SAMD1 sterile alpha motif domain containing 1 involved_in IDA (PMID:33980486) UniProt PMID:33980486 NCBI chr19:14,087,851...14,090,751
Ensembl chr19:14,087,851...14,091,036 		JBrowse link
regulation of heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1A bromodomain adjacent to zinc finger domain 1A involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:34,752,731...34,875,360
Ensembl chr14:34,752,731...34,875,647 		JBrowse link
regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT|involved_in IMP (PMID:24071584) UniProt PMID:24071584 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      regulation of cellular process 12447
        regulation of cellular component organization 2893
          regulation of chromatin organization 37
            negative regulation of chromatin organization + 7
            positive regulation of chromatin organization + 14
            regulation of heterochromatin formation + 24
            regulation of heterochromatin organization + 0
Path 2
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      cellular component organization or biogenesis 7533
        cellular component organization 7308
          protein-containing complex organization 2776
            protein-DNA complex organization 1081
              chromatin organization 946
                regulation of chromatin organization 37
                  negative regulation of chromatin organization + 7
                  positive regulation of chromatin organization + 14
                  regulation of heterochromatin formation + 24
                  regulation of heterochromatin organization + 0
paths to the root