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ONTOLOGY REPORT - ANNOTATIONS

Term:quinone biosynthetic process
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Accession:GO:1901663 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of quinone.
Synonyms:exact_synonym: quinone anabolism;   quinone biosynthesis;   quinone formation;   quinone synthesis
 related_synonym: quinone cofactor anabolism;   quinone cofactor biosynthesis;   quinone cofactor biosynthetic process;   quinone cofactor formation;   quinone cofactor synthesis
 alt_id: GO:0045426


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quinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdss1 decaprenyl diphosphate synthase subunit 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr17:85,059,953...85,098,739
Ensembl chr17:85,060,106...85,098,730 		JBrowse link
positive regulation of ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pptc7 protein phosphatase targeting COQ7 involved_in ISO
IEA 		(PMID:30267671)
GO_REF:0000107 		RGD
Ensembl		 PMID:30267671 GO_REF:0000107 NCBI chr12:34,249,963...34,288,339
Ensembl chr12:34,249,977...34,288,339 		JBrowse link
regulation of ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adck2 aarF domain containing kinase 2 involved_in ISO
IEA 		(PMID:31480808)
GO_REF:0000107 		RGD
Ensembl		 PMID:31480808 GO_REF:0000107 NCBI chr 4:68,348,853...68,362,725
Ensembl chr 4:68,348,864...68,374,608 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:34,249,963...34,288,339
Ensembl chr12:34,249,977...34,288,339 		JBrowse link
ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq2 coenzyme Q2, polyprenyltransferase involved_in
acts_upstream_of_or_within 		IEA
ISO
ISS
IBA 		GO_REF:0000041
(PMID:15153069), (PMID:16400613), (PMID:17374725), (PMID:27493029)
GO_REF:0000024
SGD:S000005324 (PMID:15153069)
GO_REF:0000033
MGI:7628277 (PMID:38697100)
GO_REF:0000104
GO_REF:0000043 		UniProt
RGD
GO_Central		 PMID:15153069 PMID:16400613 PMID:17374725 PMID:27493029 PMID:38697100 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 NCBI chr14:8,941,429...8,961,418
Ensembl chr14:8,941,461...8,960,891 		JBrowse link
G Coq3 coenzyme Q3 methyltransferase involved_in IGI
IEA
ISS
ISO 		GO_REF:0000104
GO_REF:0000043
GO_REF:0000002
GO_REF:0000041
GO_REF:0000117
GO_REF:0000107
GO_REF:0000024
UniProtKB:P27680 (PMID:10777520), (PMID:38425362) 		UniProt
InterPro
Ensembl
RGD		 PMID:10777520 PMID:38425362 PMID:8125303 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000117, RGD:69814 NCBI chr 5:35,429,567...35,460,613
Ensembl chr 5:35,429,574...35,460,607 		JBrowse link
G Coq4 coenzyme Q4 involved_in IEA
ISS
ISO 		GO_REF:0000041
GO_REF:0000024
(PMID:30659264), (PMID:38014483), (PMID:38295803), (PMID:38425362)
GO_REF:0000104
GO_REF:0000002
GO_REF:0000043 		UniProt
RGD
InterPro		 PMID:30659264 PMID:38014483 PMID:38295803 PMID:38425362 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 NCBI chr 3:13,060,054...13,070,502
Ensembl chr 3:13,060,455...13,068,799 		JBrowse link
G Coq5 coenzyme Q5, methyltransferase involved_in IEA
ISO
ISS
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000107
GO_REF:0000043
UniProtKB:P49017 (PMID:25152161), (PMID:38425362)
GO_REF:0000024
GO_REF:0000033 		UniProt
Ensembl
RGD
GO_Central		 PMID:25152161 PMID:38425362 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr12:41,316,922...41,333,855
Ensembl chr12:41,316,748...41,333,848 		JBrowse link
G Coq6 coenzyme Q6 monooxygenase involved_in IEA
ISO
ISS
IBA 		GO_REF:0000041
(PMID:38425362)
GO_REF:0000104
GO_REF:0000002
GO_REF:0000107
GO_REF:0000024
MGI:6451728 (PMID:30737270)
GO_REF:0000033
GO_REF:0000043 		UniProt
RGD
InterPro
Ensembl
GO_Central		 PMID:30737270 PMID:38425362 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:104,007,814...104,019,888
Ensembl chr 6:104,007,872...104,024,657 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase involved_in
NOT|acts_upstream_of_or_within 		IGI
IEA
ISS
ISO
IBA 		GO_REF:0000041
GO_REF:0000024
MGI:2157003 (PMID:19478076)
MGI:2157003|MGI:2158322 (PMID:11585841), (PMID:11716496)
GO_REF:0000033
(PMID:28409910), (PMID:38425362)
MGI:2158322 (PMID:11716496)
GO_REF:0000104
GO_REF:0000002
GO_REF:0000043
GO_REF:0000117
GO_REF:0000107 		UniProt
RGD
GO_Central
InterPro
Ensembl		 PMID:11585841 PMID:11716496 PMID:19478076 PMID:28409910 PMID:38425362 More... GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000117, RGD:69815 NCBI chr 1:172,836,359...172,851,173
Ensembl chr 1:172,835,188...172,851,158 		JBrowse link
G Coq8a coenzyme Q8A involved_in IEA
ISS
IBA
ISO 		GO_REF:0000041
GO_REF:0000024
GO_REF:0000033
MGI:6359448 (PMID:27499294)
GO_REF:0000107
GO_REF:0000043
(PMID:25498144), (PMID:27499294), (PMID:38425362) 		UniProt
GO_Central
RGD
Ensembl		 PMID:25498144 PMID:27499294 PMID:38425362 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr13:91,904,731...91,933,588
Ensembl chr13:91,904,739...91,931,431 		JBrowse link
G Coq8b coenzyme Q8B involved_in ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:27499294), (PMID:38425362)
GO_REF:0000107
GO_REF:0000033 		UniProt
RGD
Ensembl
GO_Central		 PMID:27499294 PMID:38425362 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:82,525,578...82,549,182
Ensembl chr 1:82,526,568...82,549,180 		JBrowse link
G Coq9 coenzyme Q9 involved_in
acts_upstream_of_or_within 		IEA
ISO
ISS
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000002
GO_REF:0000043
GO_REF:0000107
MGI:5473628 (PMID:23255162), (PMID:25339443)
(PMID:30661980), (PMID:38425362)
GO_REF:0000024
GO_REF:0000033 		UniProt
InterPro
Ensembl
RGD
GO_Central		 PMID:23255162 PMID:25339443 PMID:30661980 PMID:38425362 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr19:10,166,948...10,179,976
Ensembl chr19:10,166,951...10,179,949 		JBrowse link
G Fdx2 ferredoxin 2 acts_upstream_of_positive_effect
involved_in 		IEA
ISO 		GO_REF:0000107
(PMID:38425362) 		Ensembl
RGD		 PMID:38425362 GO_REF:0000107 NCBI chr 8:27,881,091...27,886,230
Ensembl chr 8:19,604,916...19,609,849 		JBrowse link
G Fdxr ferredoxin reductase acts_upstream_of_positive_effect ISS
ISO 		GO_REF:0000024
(PMID:38425362) 		UniProt
RGD		 PMID:38425362 GO_REF:0000024 NCBI chr10:101,006,845...101,015,582
Ensembl chr10:100,507,865...100,516,658 		JBrowse link
G Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:161,345,398...161,374,188
Ensembl chr 4:159,659,242...159,688,018 		JBrowse link
G Pdss1 decaprenyl diphosphate synthase subunit 1 involved_in ISO
IEA
IBA 		(PMID:16262699)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16262699 GO_REF:0000033 GO_REF:0000107 NCBI chr17:85,059,953...85,098,739
Ensembl chr17:85,060,106...85,098,730 		JBrowse link
G Pdss2 decaprenyl diphosphate synthase subunit 2 involved_in IEA
ISO
IBA 		GO_REF:0000041
GO_REF:0000043
(PMID:16262699)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:16262699 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr20:46,709,631...46,938,704
Ensembl chr20:46,709,649...46,938,708 		JBrowse link
G Rtn4ip1 reticulon 4 interacting protein 1 involved_in ISO (PMID:37884807) RGD PMID:37884807 NCBI chr20:47,382,251...47,422,747
Ensembl chr20:47,382,234...47,422,338 		JBrowse link
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23374346)
GO_REF:0000107
GO_REF:0000041
GO_REF:0000043 		UniProt
RGD
Ensembl		 PMID:23374346 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:164,139,714...164,167,777
Ensembl chr 5:158,868,672...158,880,271 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        ketone metabolic process 255
          ketone biosynthetic process 58
            quinone biosynthetic process 18
              plastoquinone biosynthetic process 0
              terrequinone A biosynthetic process + 0
              ubiquinone biosynthetic process + 18
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        biosynthetic process 8630
          small molecule biosynthetic process 669
            ketone biosynthetic process 58
              quinone biosynthetic process 18
                plastoquinone biosynthetic process 0
                terrequinone A biosynthetic process + 0
                ubiquinone biosynthetic process + 18
paths to the root