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ONTOLOGY REPORT - ANNOTATIONS


Term:quinone biosynthetic process
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Accession:GO:1901663 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of quinone.
Synonyms:exact_synonym: quinone anabolism;   quinone biosynthesis;   quinone formation;   quinone synthesis
 related_synonym: quinone cofactor anabolism;   quinone cofactor biosynthesis;   quinone cofactor biosynthetic process;   quinone cofactor formation;   quinone cofactor synthesis
 alt_id: GO:0045426


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menaquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISO
ISS
IEA
IBA
(PMID:23169578)
GO_REF:0000024
GO_REF:0000041
PMID:21873635
RGD
UniProt
PMID:23169578, PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:13792537 NCBI chr 5:165,247,630...165,259,228
Ensembl chr 5:165,247,133...165,259,224
JBrowse link
regulation of ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq3 coenzyme Q3 methyltransferase IGI RGD PMID:8125303 RGD:69814 NCBI chr 5:36,024,673...36,056,664
Ensembl chr 5:36,024,649...36,056,669
JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in ISO (PMID:30267671) RGD PMID:30267671 NCBI chr12:39,731,107...39,769,480
Ensembl chr12:39,731,121...39,769,480
JBrowse link
ubiquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq10a coenzyme Q10A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,780,930...2,788,189
Ensembl chr 7:2,780,930...2,786,949
JBrowse link
G Coq10b coenzyme Q10B involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 9:61,655,963...61,675,880
Ensembl chr 9:61,655,963...61,675,873
JBrowse link
G Coq2 coenzyme Q2, polyprenyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IBA
GO_REF:0000041
SGD:S000005324 (PMID:15153069)
GO_REF:0000024
PMID:21873635
(PMID:15153069), (PMID:16400613), (PMID:17374725), (PMID:27493029)
UniProt
RGD
PMID:15153069 PMID:16400613 PMID:17374725 PMID:27493029, PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:13792537 NCBI chr14:10,581,102...10,601,093
Ensembl chr14:10,581,136...10,600,566
JBrowse link
G Coq3 coenzyme Q3 methyltransferase involved_in ISO
IEA
UniProtKB:P27680 (PMID:10777520)
GO_REF:0000041
RGD
UniProt
PMID:10777520 GO_REF:0000041 NCBI chr 5:36,024,673...36,056,664
Ensembl chr 5:36,024,649...36,056,669
JBrowse link
G Coq4 coenzyme Q4 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:8,349,386...8,357,719
Ensembl chr 3:8,349,185...8,357,871
JBrowse link
G Coq5 coenzyme Q5, methyltransferase involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000041
UniProtKB:P49017 (PMID:25152161)
UniProt
RGD
PMID:25152161, PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr12:47,078,753...47,095,438
Ensembl chr12:47,078,753...47,095,438
JBrowse link
G Coq6 coenzyme Q6 monooxygenase involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 6:108,076,393...108,087,782
Ensembl chr 6:108,076,306...108,087,696
JBrowse link
G Coq7 coenzyme Q7, hydroxylase NOT|acts_upstream_of_or_within
involved_in
IGI
ISO
IEA
IBA
MGI:2157003 (MGI:4359329|PMID:19478076)
MGI:2157003|MGI:2158322 (MGI:2154585|PMID:11716496), (MGI:2154595|PMID:11585841)
GO_REF:0000041
GO_REF:0000043
PMID:21873635
RGD
UniProt
PMID:11585841 PMID:11716496 PMID:19478076, PMID:8660658, PMID:21873635 GO_REF:0000041 GO_REF:0000043 MGI:2154585 MGI:2154595 MGI:4359329, RGD:69815, RGD:13792537 NCBI chr 1:188,176,060...188,190,874
Ensembl chr 1:188,174,874...188,190,860
JBrowse link
G Coq8a coenzyme Q8A involved_in IEA
ISS
IBA
ISO
GO_REF:0000041
GO_REF:0000024
PMID:21873635
(PMID:25498144), (PMID:27499294)
UniProt
RGD
PMID:25498144 PMID:27499294, PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:13792537 NCBI chr13:98,451,629...98,480,438
Ensembl chr13:98,451,637...98,480,419
JBrowse link
G Coq8b coenzyme Q8B involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:27499294)
UniProt
RGD
PMID:27499294, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:84,043,487...84,067,066
Ensembl chr 1:84,044,551...84,067,066
JBrowse link
G Coq9 coenzyme Q9 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IBA
GO_REF:0000041
(MGI:5609189|PMID:25339443)
MGI:5473628 (MGI:5468078|PMID:23255162)
GO_REF:0000024
PMID:21873635
UniProt
RGD
PMID:23255162 PMID:25339443, PMID:21873635 GO_REF:0000024 GO_REF:0000041 MGI:5468078 MGI:5609189, RGD:13792537 NCBI chr19:10,583,855...10,596,848
Ensembl chr19:10,583,857...10,596,851
JBrowse link
G Fdxr ferredoxin reductase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:103,817,724...103,826,413
Ensembl chr10:103,817,704...103,826,448
JBrowse link
G Pdss1 decaprenyl diphosphate synthase subunit 1 involved_in ISO
IBA
(PMID:16262699)
(MGI:3607849|PMID:16262699)
PMID:21873635
RGD PMID:16262699, PMID:21873635 MGI:3607849, RGD:13792537 NCBI chr17:90,033,432...90,072,506
Ensembl chr17:90,033,539...90,071,408
JBrowse link
G Pdss2 decaprenyl diphosphate synthase subunit 2 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:3607849|PMID:16262699)
(PMID:16262699)
GO_REF:0000041
RGD
UniProt
PMID:16262699, PMID:21873635 GO_REF:0000041 MGI:3607849, RGD:13792537 NCBI chr20:47,966,513...48,192,747
Ensembl chr20:47,966,583...48,192,743
JBrowse link
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:23374346)
UniProt
RGD
PMID:23374346 GO_REF:0000024 NCBI chr 5:165,247,630...165,259,228
Ensembl chr 5:165,247,133...165,259,224
JBrowse link
ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,247,630...165,259,228
Ensembl chr 5:165,247,133...165,259,224
JBrowse link
ubiquinone-6 biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:159,371,263...159,399,636
Ensembl chr 4:159,371,259...159,399,634
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19610
    metabolic process 11878
      cellular metabolic process 10831
        cellular ketone metabolic process 228
          ketone biosynthetic process 51
            quinone biosynthetic process 17
              actinorhodin biosynthetic process 0
              asperthecin biosynthetic process + 0
              averantin biosynthetic process 0
              daunorubicin biosynthetic process 0
              emodin biosynthetic process + 0
              endocrocin biosynthetic process + 0
              granaticin biosynthetic process 0
              menaquinone biosynthetic process 1
              mitomycin C biosynthetic process 0
              phylloquinone biosynthetic process 0
              plastoquinone biosynthetic process 0
              pyrroloquinoline quinone biosynthetic process 0
              terrequinone A biosynthetic process + 0
              ubiquinone biosynthetic process + 17
paths to the root