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ONTOLOGY REPORT - ANNOTATIONS


Term:alpha-amino acid metabolic process
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Accession:GO:1901605 term browser browse the term
Definition:The chemical reactions and pathways involving an alpha-amino acid.
Synonyms:exact_synonym: alpha-amino acid metabolism


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'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link NW_004955506 4,351,623 4,379,528 RGD:9068941
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link NW_004955441 10,114,863 10,128,948 RGD:9068941
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link NW_004955536 2,944,770 2,955,829 RGD:9068941
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link NW_004955536 2,894,410 2,938,862 RGD:9068941
G Kmo kynurenine 3-monooxygenase JBrowse link NW_004955406 10,496,102 10,527,181 RGD:9068941
G Kynu kynureninase JBrowse link NW_004955440 9,420,141 9,536,767 RGD:9068941
1-aminocyclopropane-1-carboxylate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Accs 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) JBrowse link NW_004955422 3,442,365 3,539,288 RGD:9068941
4-hydroxyproline catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 JBrowse link NW_004955527 338,593 369,528 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 JBrowse link NW_004955507 3,687,449 3,711,939 RGD:9068941
4-hydroxyproline metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha JBrowse link NW_004955409 10,495,892 10,533,383 RGD:9068941
G Ero1b endoplasmic reticulum oxidoreductase 1 beta JBrowse link NW_004955492 3,845,406 3,911,671 RGD:9068941
G Prdx4 peroxiredoxin 4 JBrowse link NW_004955509 4,111,501 4,132,529 RGD:9068941
ammonia assimilation cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Glul glutamate-ammonia ligase JBrowse link NW_004955406 21,266,383 21,274,546 RGD:9068941
arginine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ass1 argininosuccinate synthase 1 JBrowse link NW_004955513 443,372 485,190 RGD:9068941
G Nags N-acetylglutamate synthase JBrowse link NW_004955451 17,182,392 17,186,187 RGD:9068941
arginine biosynthetic process via ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asl argininosuccinate lyase JBrowse link NW_004955456 8,409,767 8,419,915 RGD:9068941
G Otc ornithine carbamoyltransferase JBrowse link NW_004955601 481,524 543,176 RGD:9068941
arginine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase 1 JBrowse link NW_004955436 12,235,767 12,247,817 RGD:9068941
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link NW_004955423 8,637,116 8,673,881 RGD:9068941
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link NW_004955437 265,727 269,016 RGD:9068941
G Fah fumarylacetoacetate hydrolase JBrowse link NW_004955533 904,294 921,730 RGD:9068941
G Nos1 nitric oxide synthase 1 JBrowse link NW_004955455 13,797,557 13,978,402 RGD:9068941
G Nos2 nitric oxide synthase 2 JBrowse link NW_004955481 5,197,957 5,232,406 RGD:9068941
G Nos3 nitric oxide synthase 3 JBrowse link NW_004955491 5,438,228 5,457,308 RGD:9068941
arginine catabolic process to glutamate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oat ornithine aminotransferase JBrowse link NW_004955477 2,430,146 2,450,135 RGD:9068941
arginine catabolic process to ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase 1 JBrowse link NW_004955436 12,235,767 12,247,817 RGD:9068941
G Arg2 arginase 2 JBrowse link NW_004955466 2,549,557 2,577,060 RGD:9068941
arginine catabolic process to proline via ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oat ornithine aminotransferase JBrowse link NW_004955477 2,430,146 2,450,135 RGD:9068941
arginine deiminase pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Padi4 peptidyl arginine deiminase 4 JBrowse link NW_004955527 1,536,917 1,560,508 RGD:9068941
arginine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Art4 ADP-ribosyltransferase 4 (Dombrock blood group) JBrowse link NW_004955413 11,569,779 11,586,548 RGD:9068941
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link NW_004955423 8,637,116 8,673,881 RGD:9068941
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link NW_004955437 265,727 269,016 RGD:9068941
argininosuccinate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ass1 argininosuccinate synthase 1 JBrowse link NW_004955513 443,372 485,190 RGD:9068941
asparagine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asnsd1 asparagine synthetase domain containing 1 JBrowse link NW_004955403 9,176,425 9,184,310 RGD:9068941
asparagine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nit2 nitrilase family member 2 JBrowse link NW_004955427 1,856,794 1,867,545 RGD:9068941
aspartate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got1l1 glutamic-oxaloacetic transaminase 1 like 1 JBrowse link NW_004955463 13,622,781 13,627,165 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
aspartate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aspa aspartoacylase JBrowse link NW_004955467 13,277,014 13,332,658 RGD:9068941
G Ddo D-aspartate oxidase JBrowse link NW_004955411 35,142,415 35,163,234 RGD:9068941
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
aspartate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adss adenylosuccinate synthase JBrowse link NW_004955406 7,684,979 7,715,179 RGD:9068941
G Adssl1 adenylosuccinate synthase like 1 JBrowse link NW_004955538 3,179,299 3,196,251 RGD:9068941
G Ass1 argininosuccinate synthase 1 JBrowse link NW_004955513 443,372 485,190 RGD:9068941
G Ddo D-aspartate oxidase JBrowse link NW_004955411 35,142,415 35,163,234 RGD:9068941
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
citrulline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 JBrowse link NW_004955507 1,892,087 1,946,526 RGD:9068941
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link NW_004955469 9,203,433 9,227,526 RGD:9068941
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link NW_004955457 4,848,116 4,961,384 RGD:9068941
G Otc ornithine carbamoyltransferase JBrowse link NW_004955601 481,524 543,176 RGD:9068941
citrulline metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ass1 argininosuccinate synthase 1 JBrowse link NW_004955513 443,372 485,190 RGD:9068941
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link NW_004955423 8,637,116 8,673,881 RGD:9068941
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link NW_004955437 265,727 269,016 RGD:9068941
cysteine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Cth cystathionine gamma-lyase JBrowse link NW_004955423 21,542,587 21,567,935 RGD:9068941
G Ggt1 gamma-glutamyltransferase 1 JBrowse link NW_004955455 8,082,578 8,099,523 RGD:9068941
cysteine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Cth cystathionine gamma-lyase JBrowse link NW_004955423 21,542,587 21,567,935 RGD:9068941
cysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdo1 cysteine dioxygenase type 1 JBrowse link NW_004955408 35,593,981 35,605,189 RGD:9068941
G Cth cystathionine gamma-lyase JBrowse link NW_004955423 21,542,587 21,567,935 RGD:9068941
G Gclc glutamate-cysteine ligase catalytic subunit JBrowse link NW_004955411 2,593,523 2,617,553 RGD:9068941
G Gclm glutamate-cysteine ligase modifier subunit JBrowse link NW_004955423 782,468 805,384 RGD:9068941
D-alanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino acid oxidase JBrowse link NW_004955455 10,095,597 10,127,244 RGD:9068941
D-amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddo D-aspartate oxidase JBrowse link NW_004955411 35,142,415 35,163,234 RGD:9068941
D-amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino acid oxidase JBrowse link NW_004955455 10,095,597 10,127,244 RGD:9068941
G Ddo D-aspartate oxidase JBrowse link NW_004955411 35,142,415 35,163,234 RGD:9068941
D-serine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srr serine racemase JBrowse link NW_004955481 919,692 940,066 RGD:9068941
D-serine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino acid oxidase JBrowse link NW_004955455 10,095,597 10,127,244 RGD:9068941
D-serine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino acid oxidase JBrowse link NW_004955455 10,095,597 10,127,244 RGD:9068941
G Srr serine racemase JBrowse link NW_004955481 919,692 940,066 RGD:9068941
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Th tyrosine hydroxylase JBrowse link NW_004955422 13,943,590 13,951,102 RGD:9068941
glutamate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gls glutaminase JBrowse link NW_004955403 8,195,241 8,261,402 RGD:9068941
G Gls2 glutaminase 2 JBrowse link NW_004955458 4,055,088 4,065,307 RGD:9068941
G Glud1 glutamate dehydrogenase 1 JBrowse link NW_004955510 5,987,811 6,021,001 RGD:9068941
G Slc25a12 solute carrier family 25 member 12 JBrowse link NW_004955449 3,093,603 3,182,513 RGD:9068941
glutamate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gad1 glutamate decarboxylase 1 JBrowse link NW_004955449 3,964,006 4,001,850 RGD:9068941
G Glud1 glutamate dehydrogenase 1 JBrowse link NW_004955510 5,987,811 6,021,001 RGD:9068941
G Glul glutamate-ammonia ligase JBrowse link NW_004955406 21,266,383 21,274,546 RGD:9068941
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
glutamate catabolic process to aspartate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adhfe1 alcohol dehydrogenase iron containing 1 JBrowse link NW_004955444 12,706,404 12,745,106 RGD:9068941
glutamate decarboxylation to succinate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gad1 glutamate decarboxylase 1 JBrowse link NW_004955449 3,964,006 4,001,850 RGD:9068941
G Gad2 glutamate decarboxylase 2 JBrowse link NW_004955429 3,092,977 3,170,128 RGD:9068941
glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 JBrowse link NW_004955507 1,892,087 1,946,526 RGD:9068941
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 JBrowse link NW_004955483 2,467,425 2,494,416 RGD:9068941
G Dglucy D-glutamate cyclase JBrowse link NW_004955438 13,440,883 13,554,969 RGD:9068941
G Fpgs folylpolyglutamate synthase JBrowse link NW_004955419 853,891 871,729 RGD:9068941
G Gclc glutamate-cysteine ligase catalytic subunit JBrowse link NW_004955411 2,593,523 2,617,553 RGD:9068941
G Gclm glutamate-cysteine ligase modifier subunit JBrowse link NW_004955423 782,468 805,384 RGD:9068941
G Ggt1 gamma-glutamyltransferase 1 JBrowse link NW_004955455 8,082,578 8,099,523 RGD:9068941
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
G Mthfs methenyltetrahydrofolate synthetase JBrowse link NW_004955533 720,255 756,893 RGD:9068941
G Nags N-acetylglutamate synthase JBrowse link NW_004955451 17,182,392 17,186,187 RGD:9068941
G Tat tyrosine aminotransferase JBrowse link NW_004955484 4,278,083 4,287,535 RGD:9068941
glutamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Glul glutamate-ammonia ligase JBrowse link NW_004955406 21,266,383 21,274,546 RGD:9068941
G Lgsn lengsin, lens protein with glutamine synthetase domain JBrowse link NW_004955502 522,492 551,842 RGD:9068941
glutamine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gls glutaminase JBrowse link NW_004955403 8,195,241 8,261,402 RGD:9068941
G Gls2 glutaminase 2 JBrowse link NW_004955458 4,055,088 4,065,307 RGD:9068941
G Ppat phosphoribosyl pyrophosphate amidotransferase JBrowse link NW_004955447 14,552,846 14,607,416 RGD:9068941
glutamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adssl1 adenylosuccinate synthase like 1 JBrowse link NW_004955538 3,179,299 3,196,251 RGD:9068941
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 JBrowse link NW_004955483 2,467,425 2,494,416 RGD:9068941
G Asnsd1 asparagine synthetase domain containing 1 JBrowse link NW_004955403 9,176,425 9,184,310 RGD:9068941
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link NW_004955469 9,203,433 9,227,526 RGD:9068941
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link NW_004955457 4,848,116 4,961,384 RGD:9068941
G Ctps1 CTP synthase 1 JBrowse link NW_004955537 773,664 811,084 RGD:9068941
G Ctps2 CTP synthase 2 JBrowse link NW_004955519 1,587,998 1,647,810 RGD:9068941
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 JBrowse link NW_004955424 15,692,088 15,739,894 RGD:9068941
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 JBrowse link NW_004955408 330,112 372,413 RGD:9068941
G Gls glutaminase JBrowse link NW_004955403 8,195,241 8,261,402 RGD:9068941
G Gls2 glutaminase 2 JBrowse link NW_004955458 4,055,088 4,065,307 RGD:9068941
G Glud1 glutamate dehydrogenase 1 JBrowse link NW_004955510 5,987,811 6,021,001 RGD:9068941
G Gmps guanine monophosphate synthase JBrowse link NW_004955448 6,931,891 6,984,662 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004955580 674,014 737,586 RGD:9068941
G Nit2 nitrilase family member 2 JBrowse link NW_004955427 1,856,794 1,867,545 RGD:9068941
G Pfas phosphoribosylformylglycinamidine synthase JBrowse link NW_004955467 8,640,044 8,660,950 RGD:9068941
G Phgdh phosphoglycerate dehydrogenase JBrowse link NW_004955435 22,757,473 22,803,123 RGD:9068941
G Sirt4 sirtuin 4 JBrowse link NW_004955455 11,322,812 11,334,786 RGD:9068941
glycine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link NW_004955478 10,972,791 11,001,535 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link NW_004955542 710,506 720,564 RGD:9068941
G Agxt2 alanine--glyoxylate aminotransferase 2 JBrowse link NW_004955426 20,102,368 20,142,596 RGD:9068941
glycine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amt aminomethyltransferase JBrowse link NW_004955532 1,351,743 1,358,220 RGD:9068941
G Gcsh glycine cleavage system protein H JBrowse link NW_004955522 3,858,156 3,869,730 RGD:9068941
G Gldc glycine decarboxylase JBrowse link NW_004955434 10,431,434 10,533,118 RGD:9068941
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amt aminomethyltransferase JBrowse link NW_004955532 1,351,743 1,358,220 RGD:9068941
G Gcsh glycine cleavage system protein H JBrowse link NW_004955522 3,858,156 3,869,730 RGD:9068941
G Gldc glycine decarboxylase JBrowse link NW_004955434 10,431,434 10,533,118 RGD:9068941
glycine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baat bile acid-CoA:amino acid N-acyltransferase JBrowse link NW_004955419 24,469,213 24,521,728 RGD:9068941
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase JBrowse link NW_004955407 32,944,638 32,975,142 RGD:9068941
G Glyat glycine-N-acyltransferase JBrowse link NW_004955511 3,670,736 3,683,751 RGD:9068941
G Phgdh phosphoglycerate dehydrogenase JBrowse link NW_004955435 22,757,473 22,803,123 RGD:9068941
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link NW_004955478 10,972,791 11,001,535 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
histidine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like JBrowse link NW_004955474 450,676 558,659 RGD:9068941
histidine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amdhd1 amidohydrolase domain containing 1 JBrowse link NW_004955405 32,281,726 32,308,230 RGD:9068941
G Carns1 carnosine synthase 1 JBrowse link NW_004955422 18,051,721 18,061,500 RGD:9068941
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link NW_004955407 42,608,249 42,617,167 RGD:9068941
G Hal histidine ammonia-lyase JBrowse link NW_004955405 32,317,345 32,341,409 RGD:9068941
G Hdc histidine decarboxylase JBrowse link NW_004955409 4,051,574 4,072,641 RGD:9068941
G Hnmt histamine N-methyltransferase JBrowse link NW_004955440 5,084,198 5,137,577 RGD:9068941
G Uroc1 urocanate hydratase 1 JBrowse link NW_004955421 21,734,910 21,765,754 RGD:9068941
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amdhd1 amidohydrolase domain containing 1 JBrowse link NW_004955405 32,281,726 32,308,230 RGD:9068941
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link NW_004955407 42,608,249 42,617,167 RGD:9068941
G Hal histidine ammonia-lyase JBrowse link NW_004955405 32,317,345 32,341,409 RGD:9068941
G Uroc1 urocanate hydratase 1 JBrowse link NW_004955421 21,734,910 21,765,754 RGD:9068941
histidine catabolic process to glutamate and formate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amdhd1 amidohydrolase domain containing 1 JBrowse link NW_004955405 32,281,726 32,308,230 RGD:9068941
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link NW_004955407 42,608,249 42,617,167 RGD:9068941
G Hal histidine ammonia-lyase JBrowse link NW_004955405 32,317,345 32,341,409 RGD:9068941
G Uroc1 urocanate hydratase 1 JBrowse link NW_004955421 21,734,910 21,765,754 RGD:9068941
histidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdc histidine decarboxylase JBrowse link NW_004955409 4,051,574 4,072,641 RGD:9068941
homocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blmh bleomycin hydrolase JBrowse link NW_004955481 3,031,283 3,078,678 RGD:9068941
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link NW_004955504 5,412,290 5,435,409 RGD:9068941
homocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link NW_004955457 4,848,116 4,961,384 RGD:9068941
G Dpep1 dipeptidase 1 JBrowse link NW_004955541 3,204,421 3,215,514 RGD:9068941
G Mmut methylmalonyl-CoA mutase JBrowse link NW_004955411 8,363,142 8,397,839 RGD:9068941
G Mthfr methylenetetrahydrofolate reductase JBrowse link NW_004955486 2,096,379 2,112,240 RGD:9068941
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link NW_004955504 5,412,290 5,435,409 RGD:9068941
G Nox4 NADPH oxidase 4 JBrowse link NW_004955414 4,062,337 4,220,032 RGD:9068941
hydroxylysine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plod1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 JBrowse link NW_004955486 1,967,771 1,990,561 RGD:9068941
G Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 JBrowse link NW_004955474 11,392,163 11,473,918 RGD:9068941
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 JBrowse link NW_004955456 16,082,424 16,090,773 RGD:9068941
isoleucine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link NW_004955412 10,350,088 10,369,806 RGD:9068941
G Bcat2 branched chain amino acid transaminase 2 JBrowse link NW_004955559 1,785,253 1,796,838 RGD:9068941
kynurenine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kmo kynurenine 3-monooxygenase JBrowse link NW_004955406 10,496,102 10,527,181 RGD:9068941
G Kyat1 kynurenine aminotransferase 1 JBrowse link NW_004955570 1,211,950 1,260,561 RGD:9068941
G Kyat3 kynurenine aminotransferase 3 JBrowse link NW_004955423 5,340,863 5,388,460 RGD:9068941
L-alanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link NW_004955542 710,506 720,564 RGD:9068941
G Gpt glutamic--pyruvic transaminase JBrowse link NW_004955454 3,127,997 3,132,459 RGD:9068941
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link NW_004955474 8,248,622 8,285,449 RGD:9068941
L-alanine catabolic process, by transamination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt2 alanine--glyoxylate aminotransferase 2 JBrowse link NW_004955426 20,102,368 20,142,596 RGD:9068941
L-alanine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link NW_004955474 8,248,622 8,285,449 RGD:9068941
L-cysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link NW_004955542 710,506 720,564 RGD:9068941
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Cdo1 cysteine dioxygenase type 1 JBrowse link NW_004955408 35,593,981 35,605,189 RGD:9068941
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csad cysteine sulfinic acid decarboxylase JBrowse link NW_004955458 423,156 449,763 RGD:9068941
L-cysteine catabolic process to taurine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csad cysteine sulfinic acid decarboxylase JBrowse link NW_004955458 423,156 449,763 RGD:9068941
L-kynurenine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 JBrowse link NW_004955439 1,773,884 1,794,325 RGD:9068941
G Kyat1 kynurenine aminotransferase 1 JBrowse link NW_004955570 1,211,950 1,260,561 RGD:9068941
G Kynu kynureninase JBrowse link NW_004955440 9,420,141 9,536,767 RGD:9068941
L-kynurenine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link NW_004955433 16,121,795 16,145,129 RGD:9068941
G Kmo kynurenine 3-monooxygenase JBrowse link NW_004955406 10,496,102 10,527,181 RGD:9068941
G Kyat1 kynurenine aminotransferase 1 JBrowse link NW_004955570 1,211,950 1,260,561 RGD:9068941
G Kyat3 kynurenine aminotransferase 3 JBrowse link NW_004955423 5,340,863 5,388,460 RGD:9068941
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pipox pipecolic acid and sarcosine oxidase JBrowse link NW_004955481 4,128,503 4,225,027 RGD:9068941
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aass aminoadipate-semialdehyde synthase JBrowse link NW_004955479 3,746,003 3,805,835 RGD:9068941
G Dlst dihydrolipoamide S-succinyltransferase JBrowse link NW_004955523 660,413 680,878 RGD:9068941
L-methionine salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhmt betaine--homocysteine S-methyltransferase JBrowse link NW_004955425 21,992,219 22,009,389 RGD:9068941
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adi1 acireductone dioxygenase 1 JBrowse link NW_004955487 3,816,428 3,822,663 RGD:9068941
G Apip APAF1 interacting protein JBrowse link NW_004955422 11,405,721 11,426,700 RGD:9068941
G Enoph1 enolase-phosphatase 1 JBrowse link NW_004955433 6,522,663 6,549,352 RGD:9068941
G Mri1 methylthioribose-1-phosphate isomerase 1 JBrowse link NW_004955415 32,585,714 32,589,343 RGD:9068941
G Mtap methylthioadenosine phosphorylase JBrowse link NW_004955472 12,391,399 12,439,221 RGD:9068941
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apip APAF1 interacting protein JBrowse link NW_004955422 11,405,721 11,426,700 RGD:9068941
G Enoph1 enolase-phosphatase 1 JBrowse link NW_004955433 6,522,663 6,549,352 RGD:9068941
G Mri1 methylthioribose-1-phosphate isomerase 1 JBrowse link NW_004955415 32,585,714 32,589,343 RGD:9068941
L-phenylalanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fah fumarylacetoacetate hydrolase JBrowse link NW_004955533 904,294 921,730 RGD:9068941
G Gstz1 glutathione S-transferase zeta 1 JBrowse link NW_004955438 1,218,990 1,231,407 RGD:9068941
G Hgd homogentisate 1,2-dioxygenase JBrowse link NW_004955427 20,141,522 20,188,700 RGD:9068941
G Hpd 4-hydroxyphenylpyruvate dioxygenase JBrowse link NW_004955482 6,586,975 6,595,034 RGD:9068941
G Il4i1 interleukin 4 induced 1 JBrowse link NW_004955559 1,012,634 1,047,051 RGD:9068941
G Kyat1 kynurenine aminotransferase 1 JBrowse link NW_004955570 1,211,950 1,260,561 RGD:9068941
G Pah phenylalanine hydroxylase JBrowse link NW_004955405 37,848,486 37,909,163 RGD:9068941
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 JBrowse link NW_004955437 20,482,589 20,487,337 RGD:9068941
G Qdpr quinoid dihydropteridine reductase JBrowse link NW_004955480 6,646,088 6,666,866 RGD:9068941
G Tat tyrosine aminotransferase JBrowse link NW_004955484 4,278,083 4,287,535 RGD:9068941
L-proline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 JBrowse link NW_004955507 1,892,087 1,946,526 RGD:9068941
G Noxred1 NADP dependent oxidoreductase domain containing 1 JBrowse link NW_004955438 1,286,157 1,320,772 RGD:9068941
G Oat ornithine aminotransferase JBrowse link NW_004955477 2,430,146 2,450,135 RGD:9068941
G Pycr1 pyrroline-5-carboxylate reductase 1 JBrowse link NW_004955506 1,231,874 1,236,550 RGD:9068941
G Pycr2 pyrroline-5-carboxylate reductase 2 JBrowse link NW_004955489 138,600 143,112 RGD:9068941
G Pycr3 pyrroline-5-carboxylate reductase 3 JBrowse link NW_004955454 2,305,485 2,311,280 RGD:9068941
L-serine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phgdh phosphoglycerate dehydrogenase JBrowse link NW_004955435 22,757,473 22,803,123 RGD:9068941
G Psat1 phosphoserine aminotransferase 1 JBrowse link NW_004955512 1,132,452 1,155,405 RGD:9068941
G Psph phosphoserine phosphatase JBrowse link NW_004955456 8,198,739 8,212,111 RGD:9068941
G Serinc3 serine incorporator 3 JBrowse link NW_004955445 12,837,616 12,868,631 RGD:9068941
G Serinc5 serine incorporator 5 JBrowse link NW_004955418 29,502,562 29,573,966 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
G Srr serine racemase JBrowse link NW_004955481 919,692 940,066 RGD:9068941
L-serine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Sds serine dehydratase JBrowse link NW_004955482 9,646,523 9,653,471 RGD:9068941
G Sdsl serine dehydratase like JBrowse link NW_004955482 9,656,563 9,670,951 RGD:9068941
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link NW_004955478 10,972,791 11,001,535 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
L-serine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Psph phosphoserine phosphatase JBrowse link NW_004955456 8,198,739 8,212,111 RGD:9068941
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link NW_004955478 10,972,791 11,001,535 RGD:9068941
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link NW_004955458 4,957,614 4,962,691 RGD:9068941
G Srr serine racemase JBrowse link NW_004955481 919,692 940,066 RGD:9068941
L-threonine catabolic process to glycine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcat glycine C-acetyltransferase JBrowse link NW_004955413 24,184,997 24,192,178 RGD:9068941
G Rida reactive intermediate imine deaminase A homolog JBrowse link NW_004955417 13,810,596 13,822,982 RGD:9068941
G Sds serine dehydratase JBrowse link NW_004955482 9,646,523 9,653,471 RGD:9068941
G Sdsl serine dehydratase like JBrowse link NW_004955482 9,656,563 9,670,951 RGD:9068941
leucine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link NW_004955413 19,975,395 20,087,656 RGD:9068941
G Bcat2 branched chain amino acid transaminase 2 JBrowse link NW_004955559 1,785,253 1,796,838 RGD:9068941
leucine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Auh AU RNA binding methylglutaconyl-CoA hydratase JBrowse link NW_004955515 971,778 1,124,019 RGD:9068941
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase JBrowse link NW_004955452 3,720,103 3,734,730 RGD:9068941
G Hmgcll1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 JBrowse link NW_004955411 760,660 881,415 RGD:9068941
G Ivd isovaleryl-CoA dehydrogenase JBrowse link NW_004955416 7,327,557 7,341,533 RGD:9068941
G Mccc1 methylcrotonoyl-CoA carboxylase 1 JBrowse link NW_004955420 11,781,662 11,828,060 RGD:9068941
G Mccc2 methylcrotonoyl-CoA carboxylase 2 JBrowse link NW_004955575 445,627 503,891 RGD:9068941
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase JBrowse link NW_004955412 8,723,828 8,747,684 RGD:9068941
G Aass aminoadipate-semialdehyde synthase JBrowse link NW_004955479 3,746,003 3,805,835 RGD:9068941
lysine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aass aminoadipate-semialdehyde synthase JBrowse link NW_004955479 3,746,003 3,805,835 RGD:9068941
G Aldh7a1 aldehyde dehydrogenase 7 family member A1 JBrowse link NW_004955521 4,365,075 4,396,105 RGD:9068941
G Crym crystallin mu JBrowse link NW_004955493 443,956 460,041 RGD:9068941
G Dld dihydrolipoamide dehydrogenase JBrowse link NW_004955410 12,212,981 12,238,561 RGD:9068941
G Dlst dihydrolipoamide S-succinyltransferase JBrowse link NW_004955523 660,413 680,878 RGD:9068941
G Gcdh glutaryl-CoA dehydrogenase JBrowse link NW_004955415 31,952,400 31,958,067 RGD:9068941
G Hykk hydroxylysine kinase JBrowse link NW_004955450 900,783 918,873 RGD:9068941
G Ogdh oxoglutarate dehydrogenase JBrowse link NW_004955456 7,416,343 7,484,889 RGD:9068941
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase JBrowse link NW_004955408 2,038,168 2,062,681 RGD:9068941
G Pipox pipecolic acid and sarcosine oxidase JBrowse link NW_004955481 4,128,503 4,225,027 RGD:9068941
G Slc25a21 solute carrier family 25 member 21 JBrowse link NW_004955409 23,949,794 24,421,944 RGD:9068941
melanin biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dct dopachrome tautomerase JBrowse link NW_004955404 15,359,402 15,395,556 RGD:9068941
G Tyr tyrosinase JBrowse link NW_004955414 4,244,035 4,314,001 RGD:9068941
methionine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhmt betaine--homocysteine S-methyltransferase JBrowse link NW_004955425 21,992,219 22,009,389 RGD:9068941
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like JBrowse link NW_004955474 450,676 558,659 RGD:9068941
G Mthfr methylenetetrahydrofolate reductase JBrowse link NW_004955486 2,096,379 2,112,240 RGD:9068941
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link NW_004955492 3,372,915 3,474,173 RGD:9068941
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link NW_004955504 5,412,290 5,435,409 RGD:9068941
methionine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mat1a methionine adenosyltransferase 1A JBrowse link NW_004955510 283,860 300,991 RGD:9068941
methionine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adi1 acireductone dioxygenase 1 JBrowse link NW_004955487 3,816,428 3,822,663 RGD:9068941
G Gnmt glycine N-methyltransferase JBrowse link NW_004955437 8,944,288 8,946,642 RGD:9068941
G Msra methionine sulfoxide reductase A JBrowse link NW_004955403 51,729,753 52,071,269 RGD:9068941
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
G Mthfr methylenetetrahydrofolate reductase JBrowse link NW_004955486 2,096,379 2,112,240 RGD:9068941
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link NW_004955504 5,412,290 5,435,409 RGD:9068941
G Sms spermine synthase JBrowse link NW_004955509 2,277,501 2,328,612 RGD:9068941
negative regulation of arginine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 JBrowse link NW_004955406 39,552,034 39,645,694 RGD:9068941
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 JBrowse link NW_004955406 39,552,034 39,645,694 RGD:9068941
negative regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atcay ATCAY kinesin light chain interacting caytaxin JBrowse link NW_004955495 5,715,943 5,741,202 RGD:9068941
ornithine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 JBrowse link NW_004955507 1,892,087 1,946,526 RGD:9068941
ornithine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otc ornithine carbamoyltransferase JBrowse link NW_004955601 481,524 543,176 RGD:9068941
ornithine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnf4a hepatocyte nuclear factor 4 alpha JBrowse link NW_004955445 12,925,248 12,962,501 RGD:9068941
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1 group H member 4 JBrowse link NW_004955405 36,160,360 36,236,258 RGD:9068941
positive regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1 group H member 4 JBrowse link NW_004955405 36,160,360 36,236,258 RGD:9068941
positive regulation of homocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Comt catechol-O-methyltransferase JBrowse link NW_004955442 18,130,282 18,152,153 RGD:9068941
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link NW_004955486 4,974,130 4,985,927 RGD:9068941
proline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 JBrowse link NW_004955507 1,892,087 1,946,526 RGD:9068941
G Pycr1 pyrroline-5-carboxylate reductase 1 JBrowse link NW_004955506 1,231,874 1,236,550 RGD:9068941
G Pycr2 pyrroline-5-carboxylate reductase 2 JBrowse link NW_004955489 138,600 143,112 RGD:9068941
G Pycr3 pyrroline-5-carboxylate reductase 3 JBrowse link NW_004955454 2,305,485 2,311,280 RGD:9068941
proline catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 JBrowse link NW_004955527 338,593 369,528 RGD:9068941
G Dao D-amino acid oxidase JBrowse link NW_004955455 10,095,597 10,127,244 RGD:9068941
G Prodh2 proline dehydrogenase 2 JBrowse link NW_004955468 2,747,870 2,754,621 RGD:9068941
proline catabolic process to glutamate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 JBrowse link NW_004955527 338,593 369,528 RGD:9068941
G Prodh2 proline dehydrogenase 2 JBrowse link NW_004955468 2,747,870 2,754,621 RGD:9068941
proline metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 JBrowse link NW_004955527 338,593 369,528 RGD:9068941
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agmat agmatinase JBrowse link NW_004955527 2,563,705 2,572,421 RGD:9068941
putrescine biosynthetic process from ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Azin1 antizyme inhibitor 1 JBrowse link NW_004955417 27,231,695 27,259,564 RGD:9068941
G Azin2 antizyme inhibitor 2 JBrowse link NW_004955452 11,304,345 11,330,370 RGD:9068941
G Odc1 ornithine decarboxylase 1 JBrowse link NW_004955487 5,603,722 5,608,386 RGD:9068941
regulation of 'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acmsd aminocarboxymuconate semialdehyde decarboxylase JBrowse link NW_004955440 2,348,434 2,412,706 RGD:9068941
regulation of arginine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link NW_004955406 10,535,801 10,558,649 RGD:9068941
G Slc7a7 solute carrier family 7 member 7 JBrowse link NW_004955409 37,467,151 37,513,533 RGD:9068941
regulation of cysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link NW_004955428 5,238,460 5,309,085 RGD:9068941
regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link NW_004955428 5,238,460 5,309,085 RGD:9068941
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt4 sirtuin 4 JBrowse link NW_004955455 11,322,812 11,334,786 RGD:9068941
regulation of homocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhmt betaine--homocysteine S-methyltransferase JBrowse link NW_004955425 21,992,219 22,009,389 RGD:9068941
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcy adenosylhomocysteinase JBrowse link NW_004955422 26,992,295 27,013,100 RGD:9068941
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnmt glycine N-methyltransferase JBrowse link NW_004955437 8,944,288 8,946,642 RGD:9068941
G Pemt phosphatidylethanolamine N-methyltransferase JBrowse link NW_004955577 365,031 443,138 RGD:9068941
sarcosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sardh sarcosine dehydrogenase JBrowse link NW_004955513 2,933,918 2,975,645 RGD:9068941
sarcosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnmt glycine N-methyltransferase JBrowse link NW_004955437 8,944,288 8,946,642 RGD:9068941
selenocysteine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sephs1 selenophosphate synthetase 1 JBrowse link NW_004955429 20,849,526 20,871,074 RGD:9068941
G Sephs2 selenophosphate synthetase 2 JBrowse link NW_004955493 7,370,869 7,373,121 RGD:9068941
selenocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link NW_004955435 12,642,485 12,659,833 RGD:9068941
G Sephs2 selenophosphate synthetase 2 JBrowse link NW_004955493 7,370,869 7,373,121 RGD:9068941
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase JBrowse link NW_004955443 19,759,772 19,859,188 RGD:9068941
serine family amino acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
serine family amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thnsl2 threonine synthase like 2 JBrowse link NW_004955424 526,967 543,603 RGD:9068941
serine family amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
G Srr serine racemase JBrowse link NW_004955481 919,692 940,066 RGD:9068941
threonine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thnsl2 threonine synthase like 2 JBrowse link NW_004955424 526,967 543,603 RGD:9068941
threonine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sds serine dehydratase JBrowse link NW_004955482 9,646,523 9,653,471 RGD:9068941
G Sdsl serine dehydratase like JBrowse link NW_004955482 9,656,563 9,670,951 RGD:9068941
threonine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phgdh phosphoglycerate dehydrogenase JBrowse link NW_004955435 22,757,473 22,803,123 RGD:9068941
transsulfuration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta-synthase JBrowse link NW_004955407 38,924,355 38,939,790 RGD:9068941
G Cth cystathionine gamma-lyase JBrowse link NW_004955423 21,542,587 21,567,935 RGD:9068941
G Mpst mercaptopyruvate sulfurtransferase JBrowse link NW_004955413 23,538,648 23,543,132 RGD:9068941
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link NW_004955466 5,422,141 5,485,773 RGD:9068941
G Tst thiosulfate sulfurtransferase JBrowse link NW_004955413 23,528,468 23,534,890 RGD:9068941
tryptophan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acmsd aminocarboxymuconate semialdehyde decarboxylase JBrowse link NW_004955440 2,348,434 2,412,706 RGD:9068941
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link NW_004955441 10,114,863 10,128,948 RGD:9068941
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link NW_004955536 2,944,770 2,955,829 RGD:9068941
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link NW_004955536 2,894,410 2,938,862 RGD:9068941
G Kmo kynurenine 3-monooxygenase JBrowse link NW_004955406 10,496,102 10,527,181 RGD:9068941
G Kyat1 kynurenine aminotransferase 1 JBrowse link NW_004955570 1,211,950 1,260,561 RGD:9068941
G Kynu kynureninase JBrowse link NW_004955440 9,420,141 9,536,767 RGD:9068941
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link NW_004955471 11,229,795 11,245,255 RGD:9068941
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kynu kynureninase JBrowse link NW_004955440 9,420,141 9,536,767 RGD:9068941
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link NW_004955471 11,229,795 11,245,255 RGD:9068941
tryptophan catabolic process to kynurenine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link NW_004955506 4,351,623 4,379,528 RGD:9068941
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link NW_004955536 2,944,770 2,955,829 RGD:9068941
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link NW_004955536 2,894,410 2,938,862 RGD:9068941
G Kynu kynureninase JBrowse link NW_004955440 9,420,141 9,536,767 RGD:9068941
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link NW_004955471 11,229,795 11,245,255 RGD:9068941
tryptophan metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link NW_004955557 1,355,471 1,515,725 RGD:9068941
G Gcdh glutaryl-CoA dehydrogenase JBrowse link NW_004955415 31,952,400 31,958,067 RGD:9068941
tyrosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pah phenylalanine hydroxylase JBrowse link NW_004955405 37,848,486 37,909,163 RGD:9068941
tyrosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fah fumarylacetoacetate hydrolase JBrowse link NW_004955533 904,294 921,730 RGD:9068941
G Gstz1 glutathione S-transferase zeta 1 JBrowse link NW_004955438 1,218,990 1,231,407 RGD:9068941
G Hgd homogentisate 1,2-dioxygenase JBrowse link NW_004955427 20,141,522 20,188,700 RGD:9068941
G Hpd 4-hydroxyphenylpyruvate dioxygenase JBrowse link NW_004955482 6,586,975 6,595,034 RGD:9068941
G Tat tyrosine aminotransferase JBrowse link NW_004955484 4,278,083 4,287,535 RGD:9068941
tyrosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hgd homogentisate 1,2-dioxygenase JBrowse link NW_004955427 20,141,522 20,188,700 RGD:9068941
G Iyd iodotyrosine deiodinase JBrowse link NW_004955439 10,998,797 11,060,078 RGD:9068941
valine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link NW_004955413 19,975,395 20,087,656 RGD:9068941
G Bcat2 branched chain amino acid transaminase 2 JBrowse link NW_004955559 1,785,253 1,796,838 RGD:9068941
valine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acad8 acyl-CoA dehydrogenase family member 8 JBrowse link NW_004955412 35,067,637 35,083,889 RGD:9068941
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 JBrowse link NW_004955523 1,343,545 1,369,080 RGD:9068941
G Hibadh 3-hydroxyisobutyrate dehydrogenase JBrowse link NW_004955410 29,180,411 29,294,273 RGD:9068941
G Hibch 3-hydroxyisobutyryl-CoA hydrolase JBrowse link NW_004955403 8,752,339 8,796,693 RGD:9068941
valine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 JBrowse link NW_004955523 1,343,545 1,369,080 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14514
    metabolic process 9884
      primary metabolic process 9061
        cellular amino acid metabolic process 328
          alpha-amino acid metabolic process 191
            1-aminocyclopropane-1-carboxylate metabolic process + 1
            3-cyano-L-alanine metabolic process + 0
            4-hydroxyproline metabolic process + 6
            D-amino acid metabolic process + 3
            L-dopa metabolic process + 1
            N(omega),N(omega)-dimethyl-L-arginine metabolic process + 0
            N(omega)-methyl-L-arginine metabolic process + 0
            N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
            S-adenosylhomocysteine metabolic process + 3
            alpha-amino acid biosynthetic process + 60
            alpha-amino acid catabolic process + 98
            argininosuccinate metabolic process 1
            aspartate family amino acid metabolic process + 46
            citrulline metabolic process + 8
            discadenine metabolic process + 0
            erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process + 10
            glucosinolate biosynthetic process from phenylalanine 0
            glutamine family amino acid metabolic process + 68
            histidine metabolic process + 9
            homocysteine metabolic process + 14
            homomethionine metabolic process + 0
            hypusine metabolic process 0
            isoleucine metabolic process + 2
            kynurenine metabolic process + 10
            leucine metabolic process + 8
            nopaline metabolic process + 0
            ornithine metabolic process + 9
            phosphoarginine metabolic process + 0
            pyruvate family amino acid metabolic process + 5
            sarcosine metabolic process + 2
            serine family amino acid metabolic process + 37
            stachydrine metabolic process + 0
            tryptophan metabolic process + 11
            tyrosine metabolic process + 10
            valine metabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 14514
    metabolic process 9884
      cellular metabolic process 9313
        organic acid metabolic process 1038
          oxoacid metabolic process 1019
            carboxylic acid metabolic process 940
              cellular amino acid metabolic process 328
                alpha-amino acid metabolic process 191
                  1-aminocyclopropane-1-carboxylate metabolic process + 1
                  3-cyano-L-alanine metabolic process + 0
                  4-hydroxyproline metabolic process + 6
                  D-amino acid metabolic process + 3
                  L-dopa metabolic process + 1
                  N(omega),N(omega)-dimethyl-L-arginine metabolic process + 0
                  N(omega)-methyl-L-arginine metabolic process + 0
                  N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
                  S-adenosylhomocysteine metabolic process + 3
                  alpha-amino acid biosynthetic process + 60
                  alpha-amino acid catabolic process + 98
                  argininosuccinate metabolic process 1
                  aspartate family amino acid metabolic process + 46
                  citrulline metabolic process + 8
                  discadenine metabolic process + 0
                  erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process + 10
                  glucosinolate biosynthetic process from phenylalanine 0
                  glutamine family amino acid metabolic process + 68
                  histidine metabolic process + 9
                  homocysteine metabolic process + 14
                  homomethionine metabolic process + 0
                  hypusine metabolic process 0
                  isoleucine metabolic process + 2
                  kynurenine metabolic process + 10
                  leucine metabolic process + 8
                  nopaline metabolic process + 0
                  ornithine metabolic process + 9
                  phosphoarginine metabolic process + 0
                  pyruvate family amino acid metabolic process + 5
                  sarcosine metabolic process + 2
                  serine family amino acid metabolic process + 37
                  stachydrine metabolic process + 0
                  tryptophan metabolic process + 11
                  tyrosine metabolic process + 10
                  valine metabolic process + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.