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ONTOLOGY REPORT - ANNOTATIONS


Term:changes to DNA methylation involved in embryo development
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Accession:GO:1901538 term browser browse the term
Definition:The addition or removal of methyl groups to DNA that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:exact_synonym: DNA methylation or demethylation involved in embryogenesis;   DNA methylation or demethylation involved in embryonal development;   changes in DNA methylation involved in embryo development;   changes in DNA methylation involved in embryogenesis
 related_synonym: changes in DNA methylation involved in embryonal development


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DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:93,386,523...93,438,070
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within_positive_effect
IEA
ISO
(MGI:6270117|PMID:29117290)
(MGI:49689|PMID:1606615)
Ensembl
MGI
PMID:1606615 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6270117 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5014027|PMID:20385583)
(MGI:1347183|PMID:10555141)
Ensembl
MGI
PMID:10555141 PMID:20385583 GO_REF:0000107 MGI:1347183 MGI:5014027 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:18814855)
(MGI:1347183|PMID:10555141)
UniProt
MGI
PMID:10555141 PMID:18814855 MGI:1347183 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5319411|PMID:22495301) Ensembl
MGI
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in ISO (PMID:18622393)
(MGI:3826319|PMID:18854139)
UniProt PMID:18622393 PMID:18854139 MGI:3826319 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207) UniProt PMID:17143267 PMID:21407207 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 NCBI chr 5:62,861,492...62,868,131 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16574
    multicellular organismal process 8059
      multicellular organism development 5316
        embryo development 1264
          changes to DNA methylation involved in embryo development 9
            DNA methylation involved in embryo development + 9
Path 2
Term Annotations click to browse term
  biological_process 16574
    metabolic process 10411
      cellular metabolic process 9487
        cellular nitrogen compound metabolic process 5682
          nucleobase-containing compound metabolic process 4941
            nucleic acid metabolic process 4523
              DNA metabolic process 813
                DNA modification 98
                  DNA methylation or demethylation 86
                    changes to DNA methylation involved in embryo development 9
                      DNA methylation involved in embryo development + 9
paths to the root