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ONTOLOGY REPORT - ANNOTATIONS


Term:changes to DNA methylation involved in embryo development
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Accession:GO:1901538 term browser browse the term
Definition:The addition or removal of methyl groups to DNA that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:exact_synonym: DNA methylation or demethylation involved in embryogenesis;   DNA methylation or demethylation involved in embryonal development;   changes in DNA methylation involved in embryo development;   changes in DNA methylation involved in embryogenesis
 related_synonym: changes in DNA methylation involved in embryonal development


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DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm tail PG rich repeat containing 4 involved_in IMP
IBA
(MGI:5762940|PMID:23560077)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23560077 MGI:5762940 MGI:6201960 NCBI chr17:87,389,570...87,428,081
Ensembl chr17:87,389,571...87,427,741
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IMP (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) UniProt PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 6:83,362,373...83,457,208
Ensembl chr 6:83,362,373...83,459,084
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IMP (MGI:49689|PMID:1606615)
(MGI:6270117|PMID:29117290)
MGI PMID:1606615 PMID:29117290 MGI:49689 MGI:6270117 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:3045942|PMID:15215868)
(MGI:1347183|PMID:10555141)
(MGI:5014027|PMID:20385583)
UniProt
MGI
PMID:10555141 PMID:15215868 PMID:20385583 MGI:1347183 MGI:3045942 MGI:5014027 NCBI chr12:3,801,559...3,914,443
Ensembl chr12:3,806,007...3,914,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IGI
IEP
(MGI:1347183|PMID:10555141)
(PMID:18814855)
MGI
UniProt
PMID:10555141 PMID:18814855 MGI:1347183 NCBI chr 2:153,649,411...153,687,730
Ensembl chr 2:153,649,450...153,687,730
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
G Zfp57 zinc finger protein 57 involved_in ISO
IMP
(MGI:3826319|PMID:18854139) MGI
UniProt
PMID:18854139 GO_REF:0000096 MGI:3826319 MGI:4834177 NCBI chr17:37,001,163...37,010,729
Ensembl chr17:37,001,163...37,010,635
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IMP
IBA
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:17143267 PMID:21407207 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 MGI:6201960 NCBI chr 6:122,626,424...122,630,271
Ensembl chr 6:122,626,410...122,630,272
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28599
    multicellular organismal process 8895
      multicellular organism development 5799
        embryo development 1310
          changes to DNA methylation involved in embryo development 8
            DNA methylation involved in embryo development + 8
Path 2
Term Annotations click to browse term
  biological_process 28599
    metabolic process 11227
      cellular metabolic process 10103
        cellular nitrogen compound metabolic process 6132
          nucleobase-containing compound metabolic process 5297
            nucleic acid metabolic process 4849
              DNA metabolic process 883
                DNA modification 107
                  DNA methylation or demethylation 94
                    changes to DNA methylation involved in embryo development 8
                      DNA methylation involved in embryo development + 8
paths to the root