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ONTOLOGY REPORT - ANNOTATIONS

Term:changes to DNA methylation involved in embryo development
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Accession:GO:1901538 term browser browse the term
Definition:The addition or removal of methyl groups to DNA that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:exact_synonym: DNA methylation or demethylation involved in embryogenesis;   DNA methylation or demethylation involved in embryonal development;   changes in DNA methylation involved in embryo development;   changes in DNA methylation involved in embryogenesis
 related_synonym: changes in DNA methylation involved in embryonal development


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chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6103984|PMID:28930672)		 UniProt
RGD		 PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977 		JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 acts_upstream_of_positive_effect
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:6103984|PMID:28930672)		 UniProt
RGD		 PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977 		JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:5762940|PMID:23560077)
(MGI:6103984|PMID:28930672)		 RGD PMID:23560077 PMID:28930672 PMID:21873635 MGI:5762940 MGI:6103984, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193 		JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 GO_REF:0000107
MGI:1261819|MGI:1261827|MGI:1857157 (MGI:49689|PMID:1606615), (MGI:6151717|PMID:27841881)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)		 Ensembl
RGD		 PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:3045942|PMID:15215868)
MGI:1261819|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583), (MGI:6151717|PMID:27841881)		 RGD PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:6151717|PMID:27841881), (PMID:18814855) RGD PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:6161219 (MGI:6151717|PMID:27841881)
PMID:21873635		 RGD PMID:27841881 PMID:21873635 MGI:6151717, RGD:13792537 NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265 		JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (PMID:18622393)
MGI:3826984 (MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
GO_REF:0000024		 RGD
UniProt		 PMID:18622393 PMID:18854139 PMID:33500348 GO_REF:0000024 MGI:3826319 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846 		JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
GO_REF:0000024		 RGD
UniProt		 PMID:17143267 PMID:21407207 PMID:22722204 PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,421,825...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G LOC120096627 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859 		JBrowse link
G LOC120096971 developmental pluripotency-associated protein 3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    multicellular organismal process 8865
      multicellular organism development 5440
        embryo development 1367
          changes to DNA methylation involved in embryo development 13
            DNA methylation involved in embryo development + 13
Path 2
Term Annotations click to browse term
  biological_process 18737
    metabolic process 11461
      cellular metabolic process 9699
        cellular nitrogen compound metabolic process 6419
          nucleobase-containing compound metabolic process 5336
            nucleic acid metabolic process 4845
              DNA metabolic process 992
                DNA modification 111
                  DNA methylation or demethylation 98
                    changes to DNA methylation involved in embryo development 13
                      DNA methylation involved in embryo development + 13
paths to the root