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ONTOLOGY REPORT - ANNOTATIONS

Term:changes to DNA methylation involved in embryo development
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Accession:GO:1901538 term browser browse the term
Definition:The addition or removal of methyl groups to DNA that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:exact_synonym: DNA methylation or demethylation involved in embryogenesis;   DNA methylation or demethylation involved in embryonal development;   changes in DNA methylation involved in embryo development;   changes in DNA methylation involved in embryogenesis
 related_synonym: changes in DNA methylation involved in embryonal development

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DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5762940|PMID:23560077)		 RGD PMID:23560077, PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263 		JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 GO_REF:0000107
MGI:1857157 (MGI:49689|PMID:1606615)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)		 Ensembl
RGD		 PMID:1606615 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6270117 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in		 ISO MGI:1261819 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583)
(MGI:3045942|PMID:15215868)		 RGD PMID:10555141 PMID:15215868 PMID:20385583 MGI:1347183 MGI:3045942 MGI:5014027 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827 (MGI:1347183|PMID:10555141), (PMID:18814855) RGD PMID:10555141 PMID:18814855 MGI:1347183 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043 		JBrowse link
G Zfp57 zinc finger protein 57 involved_in ISO
ISS		 (PMID:18622393)
(MGI:3826319|PMID:18854139)
GO_REF:0000024		 RGD
UniProt		 PMID:18622393 PMID:18854139 GO_REF:0000024 MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537 		JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:74,094,670...74,095,146 JBrowse link
G AABR07017902.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:32,412,245...32,412,709 JBrowse link
G AABR07026842.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:2,920,610...2,921,083 JBrowse link
G AABR07058017.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:98,734,716...98,735,192 JBrowse link
G AABR07061871.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:150,199,627...150,200,088 JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS		 PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
GO_REF:0000024		 RGD
UniProt		 PMID:17143267 PMID:21407207 PMID:22722204, PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,683,180...60,683,658
Ensembl chr 8:60,683,183...60,683,632 		JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:74,094,652...74,095,296 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    multicellular organismal process 8923
      multicellular organism development 5747
        embryo development 1309
          changes to DNA methylation involved in embryo development 15
            DNA methylation involved in embryo development + 15
Path 2
Term Annotations click to browse term
  biological_process 19612
    metabolic process 11881
      cellular metabolic process 10838
        cellular nitrogen compound metabolic process 6615
          nucleobase-containing compound metabolic process 5410
            nucleic acid metabolic process 4921
              DNA metabolic process 887
                DNA modification 107
                  DNA methylation or demethylation 94
                    changes to DNA methylation involved in embryo development 15
                      DNA methylation involved in embryo development + 15
paths to the root