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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
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Accession:GO:1901522 term browser browse the term
Definition:Any positive regulation of transcription from RNA polymerase II promoter that is involved in cellular response to chemical stimulus.
Synonyms:exact_synonym: positive regulation of transcription from Pol II promoter involved in cellular response to chemical stimulus;   stimulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   up regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   upregulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
 narrow_synonym: activation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   stimulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
 related_synonym: activation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   positive regulation of gene-specific transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   positive regulation of global transcription from Pol II promoter involved in cellular response to chemical stimulus;   up regulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus;   upregulation of global transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus



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positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO (MGI:3851266|PMID:19584270) RGD PMID:19584270 MGI:3851266 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA
(PMID:20843790)
GO_REF:0000107
RGD
Ensembl
PMID:20843790 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107 MGI:5487530 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (MGI:3851266|PMID:19584270) RGD PMID:19584270 MGI:3851266 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (PMID:24955228) RGD PMID:24955228 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107 MGI:5487530 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO (MGI:85343|PMID:8954108) RGD PMID:8954108 MGI:85343 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Rxrg retinoid X receptor gamma acts_upstream_of_or_within ISO (MGI:60180|PMID:8391126) RGD PMID:8391126 MGI:60180 NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167
JBrowse link
G Smad1 SMAD family member 1 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P97454 (MGI:5487530|PMID:20843790)
Ensembl
RGD
PMID:20843790 GO_REF:0000107 MGI:5487530 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad5 SMAD family member 5 involved_in ISO UniProtKB:P70340 (MGI:5487530|PMID:20843790) RGD PMID:20843790 MGI:5487530 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to calcium ion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carf calcium responsive transcription factor involved_in IEA
ISO
IDA
GO_REF:0000107
(PMID:11832226), (PMID:22174809)
Ensembl
RGD
PMID:11832226 PMID:22174809 PMID:11832226 GO_REF:0000107, RGD:8553337 NCBI chr 9:61,502,368...61,552,433
Ensembl chr 9:61,506,956...61,550,462
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19652095), (PMID:22735262), (PMID:24681946)
UniProt
Ensembl
RGD
PMID:19652095 PMID:22735262 PMID:24681946 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 involved_in ISO (PMID:24844779) RGD PMID:24844779 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Notch1 notch receptor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5319604|PMID:18299578)
UniProt
RGD
PMID:18299578 GO_REF:0000024 MGI:5319604 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (PMID:23303788) RGD PMID:23303788 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (MGI:4867601|PMID:20935145) RGD PMID:20935145 MGI:4867601 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO (PMID:19652095) RGD PMID:19652095 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO
IMP
(PMID:21113145)
PMID:23392669
RGD PMID:21113145 PMID:23392669 RGD:10047168 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 involved_in ISO
IEA
ISS
(PMID:16314513)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:16314513 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755
JBrowse link
G Mt3 metallothionein 3 involved_in ISO
ISS
(PMID:18554677)
GO_REF:0000024
RGD
UniProt
PMID:18554677 GO_REF:0000024 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 involved_in IMP PMID:16314513 UniProt PMID:16314513 RGD:8655528 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Sesn2 sestrin 2 involved_in ISO (PMID:23274085) RGD PMID:23274085 NCBI chr 5:144,702,287...144,721,241
Ensembl chr 5:144,701,530...144,721,260
JBrowse link
positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein NOT|involved_in ISO (PMID:21803450) RGD PMID:21803450 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Creb3 cAMP responsive element binding protein 3 involved_in ISO (PMID:16940180)
(PMID:16940180), (PMID:18391022)
RGD PMID:16940180 PMID:18391022 NCBI chr 5:57,817,835...57,823,171
Ensembl chr 5:57,817,832...57,824,390
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (MGI:5607229|PMID:20955178) RGD PMID:20955178 MGI:5607229 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Xbp1 X-box binding protein 1 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5605954|PMID:14559994), (MGI:5607229|PMID:20955178), (MGI:5607243|PMID:16332684)
(PMID:25239945)
GO_REF:0000024
RGD
UniProt
PMID:14559994 PMID:16332684 PMID:20955178 PMID:25239945 PMID:21873635 GO_REF:0000024 MGI:5605954 MGI:5607229 MGI:5607243, RGD:13792537 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    response to stimulus 10323
      response to chemical 6173
        cellular response to chemical stimulus 3541
          positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 25
            positive regulation of transcription from RNA polymerase II promoter by pheromones 0
            positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
            positive regulation of transcription from RNA polymerase II promoter in response to calcium ion 1
            positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion 0
            positive regulation of transcription from RNA polymerase II promoter in response to ethanol 0
            positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
            positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
            positive regulation of transcription from RNA polymerase II promoter in response to iron 0
            positive regulation of transcription from RNA polymerase II promoter in response to maltose 0
            positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
            positive regulation of transcription from RNA polymerase II promoter in response to methylglyoxal 0
            positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
            positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 4
Path 2
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      cellular metabolic process 10656
        cellular aromatic compound metabolic process 5581
          nucleobase-containing compound metabolic process 5360
            nucleic acid metabolic process 4874
              RNA metabolic process 4346
                regulation of RNA metabolic process 3522
                  regulation of RNA biosynthetic process 3231
                    regulation of nucleic acid-templated transcription 3225
                      regulation of transcription, DNA-templated 3223
                        positive regulation of transcription, DNA-templated 1643
                          positive regulation of transcription by RNA polymerase II 1290
                            positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 25
                              positive regulation of transcription from RNA polymerase II promoter by pheromones 0
                              positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance 0
                              positive regulation of transcription from RNA polymerase II promoter in response to calcium ion 1
                              positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion 0
                              positive regulation of transcription from RNA polymerase II promoter in response to ethanol 0
                              positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure 0
                              positive regulation of transcription from RNA polymerase II promoter in response to hypoxia 6
                              positive regulation of transcription from RNA polymerase II promoter in response to iron 0
                              positive regulation of transcription from RNA polymerase II promoter in response to maltose 0
                              positive regulation of transcription from RNA polymerase II promoter in response to menadione 0
                              positive regulation of transcription from RNA polymerase II promoter in response to methylglyoxal 0
                              positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress + 5
                              positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 4
paths to the root