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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of extracellular matrix assembly
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Accession:GO:1901201 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of extracellular matrix assembly.



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regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO UniProtKB:P00797 (PMID:17416596) RGD PMID:17416596 NCBI chr19:69,426,540...69,447,017
Ensembl chr19:52,529,185...52,540,977
JBrowse link
G Has2 hyaluronan synthase 2 IMP RGD PMID:27094859 RGD:12910548 NCBI chr 7:90,002,929...90,028,933
Ensembl chr 7:88,113,326...88,128,933
JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:21311046) RGD PMID:21311046 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of ISO (PMID:31319059) RGD PMID:31319059 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5754386 (PMID:25572963)
Ensembl
RGD
PMID:25572963 GO_REF:0000107 NCBI chr 4:121,148,102...121,335,549
Ensembl chr 4:119,590,771...119,778,232
JBrowse link
G Mir145 microRNA 145 acts_upstream_of
involved_in
ISO UniProtKB:P01137 (PMID:25323858)
(PMID:25704091)
RGD PMID:25323858 PMID:25704091 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727
JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:28131417) RGD PMID:28131417 NCBI chr15:98,587,984...98,588,079
Ensembl chr15:92,180,765...92,180,860
JBrowse link
G Mir19a microRNA 19a acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:98,588,131...98,588,212
Ensembl chr15:92,180,912...92,180,993
JBrowse link
G Mir19b1 microRNA 19b-1 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:98,588,433...98,588,519
Ensembl chr15:92,181,214...92,181,300
JBrowse link
G Mir19b2 microRNA 19b-2 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr  X:137,343,058...137,343,153
Ensembl chr  X:132,422,072...132,422,167
JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:28095798) RGD PMID:28095798 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529
JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of ISO (PMID:26315535) RGD PMID:26315535 NCBI chr 1:142,849,400...142,849,489 JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:28251559) RGD PMID:28251559 NCBI chr  X:24,460,648...24,460,755
Ensembl chr  X:20,981,235...20,981,342
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:25704091) RGD PMID:25704091 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (PMID:30729664) RGD PMID:30729664 NCBI chr14:2,634,294...2,810,269
Ensembl chr14:2,489,397...2,663,341
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:122,555,532...122,736,934
Ensembl chr 8:113,677,284...113,858,731
JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:53,900,338...53,948,325
Ensembl chr 8:45,003,538...45,051,522
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 involved_in ISO UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr11:68,321,738...68,540,724
Ensembl chr11:54,859,135...55,078,467
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:30729664)
Ensembl
RGD
PMID:30729664 GO_REF:0000107 NCBI chr19:69,426,540...69,447,017
Ensembl chr19:52,529,185...52,540,977
JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (PMID:25056700) RGD PMID:25056700 NCBI chr 6:31,175,919...31,183,657
Ensembl chr 6:25,445,298...25,463,698
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 IMP RGD PMID:27488450 RGD:152995505 NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:30729664) RGD PMID:30729664 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529
JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) RGD PMID:21307346 NCBI chr15:54,662,483...54,675,320
Ensembl chr15:54,662,483...54,681,141
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of
involved_in
ISO (PMID:30729664)
(PMID:21307346)
RGD PMID:21307346 PMID:30729664 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:26747772)
Ensembl
RGD
PMID:26747772 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2176205|MGI:2385468 (PMID:20881014) RGD PMID:20881014 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of ISO (PMID:24279830) RGD PMID:24279830 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of
involved_in
ISO
IEA
(PMID:28251559)
GO_REF:0000107
RGD
Ensembl
PMID:28251559 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      regulation of cellular process 13014
        regulation of cellular component biogenesis 1157
          regulation of extracellular matrix assembly 28
            negative regulation of extracellular matrix assembly + 11
            positive regulation of extracellular matrix assembly + 15
            regulation of basement membrane assembly involved in embryonic body morphogenesis + 5
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      cellular component organization or biogenesis 7188
        cellular component organization 6904
          extracellular structure organization 326
            extracellular matrix organization 325
              extracellular matrix assembly 59
                regulation of extracellular matrix assembly 28
                  negative regulation of extracellular matrix assembly + 11
                  positive regulation of extracellular matrix assembly + 15
                  regulation of basement membrane assembly involved in embryonic body morphogenesis + 5
paths to the root