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ONTOLOGY REPORT - ANNOTATIONS

Term:primary amino compound metabolic process
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Accession:GO:1901160 term browser browse the term
Definition:The chemical reactions and pathways involving primary amino compound.
Synonyms:exact_synonym: primary amino compound metabolism


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ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chka choline kinase alpha IDA RGD PMID:1577786 RGD:61551 NCBI chr 1:210,506,069...210,554,753
Ensembl chr 1:201,076,860...201,125,516 		JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:18227059)
GO_REF:0000033		 UniProt
Ensembl
RGD
GO_Central		 PMID:18227059 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:182,451,182...182,466,569
Ensembl chr 1:172,954,394...173,032,429 		JBrowse link
phenylethylamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maob monoamine oxidase B IDA RGD PMID:18539264 RGD:2316732 NCBI chr  X:8,490,405...8,594,065
Ensembl chr  X:5,907,266...6,011,003 		JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maoa monoamine oxidase A IDA
IMP		 Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD PMID:11754741 PMID:11754741 RGD:1600709, RGD:1600709 NCBI chr  X:8,615,239...8,681,372
Ensembl chr  X:6,030,795...6,099,593 		JBrowse link
regulation of serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26711020)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26711020 GO_REF:0000024 GO_REF:0000107 NCBI chr12:40,610,244...40,643,220
Ensembl chr12:34,901,219...34,982,521 		JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:10027744 GO_REF:0000033, RGD:5129182 NCBI chr14:90,592,304...90,682,830
Ensembl chr14:86,378,685...86,469,208 		JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000043
GO_REF:0000002
GO_REF:0000041
(PMID:14697203)		 UniProt
InterPro
RGD		 PMID:14697203 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 NCBI chr 1:106,293,695...106,314,628
Ensembl chr 1:97,157,409...97,178,344 		JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041
GO_REF:0000002
GO_REF:0000043		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 NCBI chr 7:52,571,909...52,676,305
Ensembl chr 7:50,685,694...50,789,424 		JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:115,762,662...115,771,832
Ensembl chr 7:113,881,618...113,891,759 		JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:106,293,695...106,314,628
Ensembl chr 1:97,157,409...97,178,344 		JBrowse link
serotonin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857092 (PMID:2765934) RGD PMID:2765934 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856098 (PMID:8174230) RGD PMID:8174230 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO
IEA		 MGI:4127237 (PMID:22678064)
GO_REF:0000107		 RGD
Ensembl		 PMID:22678064 GO_REF:0000107 NCBI chr20:8,287,813...8,645,437
Ensembl chr20:8,288,711...8,643,960 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within ISO
IEA		 MGI:1928285 (PMID:11160454)
GO_REF:0000107		 RGD
Ensembl		 PMID:11160454 GO_REF:0000107 NCBI chr10:6,136,458...6,560,003
Ensembl chr10:5,631,369...6,044,637 		JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A involved_in ISS
ISO		 GO_REF:0000024
(PMID:11080193)		 UniProt
RGD		 PMID:11080193 GO_REF:0000024 NCBI chr 2:38,427,169...38,431,733
Ensembl chr 2:36,694,174...36,695,442 		JBrowse link
G Maoa monoamine oxidase A IDA
IMP		 Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD PMID:11754741 PMID:11263670 PMID:11754741 RGD:1600709, RGD:1600713, RGD:1600709 NCBI chr  X:8,615,239...8,681,372
Ensembl chr  X:6,030,795...6,099,593 		JBrowse link
G Pde1b phosphodiesterase 1B acts_upstream_of_or_within ISO
IEA		 MGI:3604470 (PMID:17559891)
GO_REF:0000107		 RGD
Ensembl		 PMID:17559891 GO_REF:0000107 NCBI chr 7:136,505,834...136,533,034
Ensembl chr 7:134,627,322...134,654,580 		JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:23926250)		 GO_Central
Ensembl
RGD		 PMID:23926250 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:38,064,026...38,244,854
Ensembl chr 2:36,330,292...36,512,614 		JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO MGI:3757641 (PMID:16532389) RGD PMID:16532389 NCBI chr 4:119,229,447...119,233,320
Ensembl chr 4:117,671,949...117,675,678 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15936112 RGD:4891926 NCBI chr 1:35,514,914...35,548,898
Ensembl chr 1:33,686,391...33,720,461 		JBrowse link
Term paths to the root