×
Welcome
{{ username}}
Message Center
{{ messageCount }} Messages
Go to Message Center
Watched Genes
{{$index + 1}}.
{{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Update Watcher
Remove Watcher
Watched Ontology Terms
{{$index + 1}}.
{{ watchedTerm.term }} ({{watchedTerm.accId}})
Update Watcher
Remove Watcher
{{gene.symbol}}:
{{ gene.description }}
×
Save List to My RGD
Create Name:
Description:
×
Save what matters to you
{{ loginError }}
Sign in with your RGD account
Email Address:
Password:
Create New Account
Recover Password
×
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be send to {{ username }}
{{geneWatchAttr}}
Analyze
Gene
Strain
QTL
List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailble
Variant Visualizer (Genomic Variants)
unavailable
Gene Annotator (Functional Annotation)
Gene Annotator (Annotation Distribution)
Variant Visualizer (Genomic Variants)
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants) unavailble
Variant Visualizer (Damaging Variants)
unavailable
InterViewer (Protein-Protein Interactions)
GViewer (Genome Viewer)
Variant Visualizer (Damaging Variants)
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Gene Annotator (Annotation Comparison)
OLGA (Gene List Generator)
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
MOET (Multi-Ontology Enrichement)
GOLF (Gene-Ortholog Location Finder)
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
(beta)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Overgo Probe Designer
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
COVID-19
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
new
Genetic Models
Autism Models
PhenoMiner (Quantitative Phenotypes)
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
GERRC (Gene Editing Rat Resource Center)
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Poster Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
ONTOLOGY REPORT - ANNOTATIONS
{{ watchLinkText }}
Term:
xylulose 5-phosphate biosynthetic process
go back to main search page
Accession:
GO:1901159
browse the term
Definition:
The chemical reactions and pathways resulting in the formation of xylulose 5-phosphate.
Synonyms:
exact_synonym:
xylulose 5-phosphate anabolism; xylulose 5-phosphate biosynthesis; xylulose 5-phosphate formation; xylulose 5-phosphate synthesis
show annotations for term's descendants Sort by:
symbol
object name
position
reference
evidence
↑ asc
↓ desc
Rat (5)
Mouse (6)
Human (6)
Chinchilla (4)
Bonobo (5)
Dog (5)
Squirrel (5)
Pig (6)
Green Monkey (5)
Naked Mole-rat (5)
All
Genes (5)
xylulose 5-phosphate biosynthetic process
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Tkt
transketolase
involved_in
ISO
(MGI:7257768|PMID:5360673)
RGD
PMID:5360673
MGI:7257768
NCBI chr16:5,723,764...5,748,702
Ensembl chr16:5,723,762...5,748,698
glucuronate catabolic process to xylulose 5-phosphate
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Akr1a1
aldo-keto reductase family 1 member A1
involved_in
ISO
(MGI:7262842|PMID:38160)
RGD
PMID:38160
MGI:7262842
NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674
G
Cryl1
crystallin, lambda 1
involved_in
ISO
(MGI:7262842|PMID:38160)
RGD
PMID:38160
MGI:7262842
NCBI chr15:31,427,011...31,545,997
Ensembl chr15:31,427,054...31,545,997
G
Dcxr
dicarbonyl and L-xylulose reductase
involved_in
ISO
(MGI:2179664|PMID:11882650)
RGD
PMID:11882650
MGI:2179664
NCBI chr10:106,006,404...106,008,294
G
Sord
sorbitol dehydrogenase
involved_in
ISO
(MGI:7262842|PMID:38160)
RGD
PMID:38160
MGI:7262842
NCBI chr 3:109,184,697...109,216,133
Ensembl chr 3:109,184,676...109,216,133
Term paths to the root
one shortest
all shortest
one longest
all longest
one shortest and longest
all
Path 1
Term
Annotations
biological_process
19898
metabolic process
12211
biosynthetic process
6289
organic substance biosynthetic process
6196
carbohydrate derivative biosynthetic process
647
xylulose 5-phosphate biosynthetic process
5
D-arabinose catabolic process to xylulose 5-phosphate
0
D-arabitol catabolic process to xylulose 5-phosphate
0
L-arabinose catabolic process to xylulose 5-phosphate
0
L-arabitol catabolic process to xylulose 5-phosphate
0
L-xylitol catabolic process to xylulose 5-phosphate
0
glucuronate catabolic process to xylulose 5-phosphate
4
ribitol catabolic process to xylulose 5-phosphate
0
Path 2
Term
Annotations
biological_process
19898
metabolic process
12211
cellular metabolic process
9631
phosphorus metabolic process
2886
phosphate-containing compound metabolic process
2858
xylulose 5-phosphate metabolic process
5
xylulose 5-phosphate biosynthetic process
5
D-arabinose catabolic process to xylulose 5-phosphate
0
D-arabitol catabolic process to xylulose 5-phosphate
0
L-arabinose catabolic process to xylulose 5-phosphate
0
L-arabitol catabolic process to xylulose 5-phosphate
0
L-xylitol catabolic process to xylulose 5-phosphate
0
glucuronate catabolic process to xylulose 5-phosphate
4
ribitol catabolic process to xylulose 5-phosphate
0