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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of secondary metabolite biosynthetic process
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Accession:GO:1900376 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.
Synonyms:exact_synonym: regulation of secondary metabolite biosynthesis


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negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IMP (MGI:5912387|PMID:29025994) CACAO PMID:29025994 MGI:5912387 NCBI chr10:81,357,491...81,366,225
Ensembl chr10:81,357,491...81,366,225
JBrowse link
G Opn3 opsin 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:175,662,421...175,692,901
Ensembl chr 1:175,662,421...175,692,776
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor (GEF) 2 involved_in IMP (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chr 3:79,062,511...79,286,545
Ensembl chr 3:79,062,516...79,286,517
JBrowse link
G Slc24a5 solute carrier family 24, member 5 acts_upstream_of_or_within IMP (MGI:3775882|PMID:18166528) MGI PMID:18166528 MGI:3775882 NCBI chr 2:125,068,127...125,088,677
Ensembl chr 2:125,068,124...125,088,677
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in IDA (MGI:5619434|PMID:23569434) CACAO PMID:23569434 MGI:5619434 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti involved_in IGI
IBA
(MGI:5294257|PMID:21949658)
(MGI:6201960|PMID:21873635)
CACAO
GO_Central
PMID:21873635 PMID:21949658 MGI:5294257 MGI:6201960 NCBI chr 2:154,950,599...155,051,012
Ensembl chr 2:154,791,402...155,051,012
Ensembl chr 2:154,791,402...155,051,012
JBrowse link
G Appl1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:26,918,986...26,970,611
Ensembl chr14:26,918,988...26,971,232
JBrowse link
G Atp7a ATPase, Cu++ transporting, alpha polypeptide involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:106,027,224...106,128,161
Ensembl chr  X:106,027,276...106,124,926
JBrowse link
G Cdh3 cadherin 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:106,510,852...106,556,911
Ensembl chr 8:106,510,891...106,557,297
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:83,649,408...83,664,789
Ensembl chr 8:83,652,677...83,664,694
JBrowse link
G Opn3 opsin 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:175,662,421...175,692,901
Ensembl chr 1:175,662,421...175,692,776
JBrowse link
G Pmel premelanosome protein involved_in IMP (MGI:5294257|PMID:21949658) CACAO PMID:21949658 MGI:5294257 NCBI chr10:128,695,888...128,720,238
Ensembl chr10:128,704,195...128,720,238
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in IGI
ISO
(MGI:5294257|PMID:21949658) CACAO
MGI
PMID:21949658 GO_REF:0000096 MGI:4834177 MGI:5294257 NCBI chr 4:80,834,123...80,851,736
Ensembl chr 4:80,834,123...80,851,719
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in IC (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosis, nephropathic involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:73,183,133...73,199,115
Ensembl chr11:73,183,596...73,199,042
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO
IMP
(MGI:6492453|PMID:33208952) MGI
UniProt
PMID:33208952 GO_REF:0000096 MGI:4834177 MGI:6492453 NCBI chr10:81,357,491...81,366,225
Ensembl chr10:81,357,491...81,366,225
JBrowse link
G Slc7a11 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 acts_upstream_of_or_within IMP (MGI:3588610|PMID:16037214) MGI PMID:16037214 MGI:3588610 NCBI chr 3:50,364,936...50,499,087
Ensembl chr 3:49,892,526...50,443,614
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28594
    metabolic process 11171
      biosynthetic process 5695
        regulation of biosynthetic process 4110
          regulation of secondary metabolite biosynthetic process 15
            negative regulation of secondary metabolite biosynthetic process + 5
            positive regulation of secondary metabolite biosynthetic process + 9
            regulation of (+)-kotanin biosynthetic process + 0
            regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
            regulation of aflatoxin biosynthetic process + 0
            regulation of arugosin biosynthetic process + 0
            regulation of asperthecin biosynthetic process + 0
            regulation of brevianamide F biosynthetic process + 0
            regulation of cordyol C biosynthetic process + 0
            regulation of dehydroaustinol biosynthetic process + 0
            regulation of demethylkotanin biosynthetic process + 0
            regulation of diorcinol biosynthetic process + 0
            regulation of emericellamide biosynthetic process + 0
            regulation of emericellin biosynthetic process + 0
            regulation of emodin biosynthetic process + 0
            regulation of endocrocin biosynthetic process + 0
            regulation of ergot alkaloid biosynthetic process + 0
            regulation of fumitremorgin B biosynthetic process + 0
            regulation of fumonisin biosynthetic process + 0
            regulation of gerfelin biosynthetic process + 0
            regulation of gliotoxin biosynthetic process + 0
            regulation of glucosinolate biosynthetic process 0
            regulation of helvolic acid biosynthetic process + 0
            regulation of lignin biosynthetic process + 0
            regulation of melanin biosynthetic process + 15
            regulation of monodictyphenone biosynthetic process + 0
            regulation of o-orsellinic acid biosynthetic process + 0
            regulation of orcinol biosynthetic process + 0
            regulation of penicillin biosynthetic process + 0
            regulation of phytoalexin biosynthetic process + 0
            regulation of polyketide biosynthetic process + 0
            regulation of proanthocyanidin biosynthetic process 0
            regulation of siderophore biosynthetic process + 0
            regulation of sinapate ester biosynthetic process + 0
            regulation of sterigmatocystin biosynthetic process + 0
            regulation of tensidol A biosynthetic process + 0
            regulation of tensidol B biosynthetic process + 0
            regulation of terrequinone A biosynthetic process + 0
            regulation of violaceol I biosynthetic process + 0
            regulation of violaceol II biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 28594
    biological regulation 13228
      regulation of biological process 12577
        regulation of metabolic process 6853
          regulation of secondary metabolic process 15
            regulation of secondary metabolite biosynthetic process 15
              negative regulation of secondary metabolite biosynthetic process + 5
              positive regulation of secondary metabolite biosynthetic process + 9
              regulation of (+)-kotanin biosynthetic process + 0
              regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
              regulation of aflatoxin biosynthetic process + 0
              regulation of arugosin biosynthetic process + 0
              regulation of asperthecin biosynthetic process + 0
              regulation of brevianamide F biosynthetic process + 0
              regulation of cordyol C biosynthetic process + 0
              regulation of dehydroaustinol biosynthetic process + 0
              regulation of demethylkotanin biosynthetic process + 0
              regulation of diorcinol biosynthetic process + 0
              regulation of emericellamide biosynthetic process + 0
              regulation of emericellin biosynthetic process + 0
              regulation of emodin biosynthetic process + 0
              regulation of endocrocin biosynthetic process + 0
              regulation of ergot alkaloid biosynthetic process + 0
              regulation of fumitremorgin B biosynthetic process + 0
              regulation of fumonisin biosynthetic process + 0
              regulation of gerfelin biosynthetic process + 0
              regulation of gliotoxin biosynthetic process + 0
              regulation of glucosinolate biosynthetic process 0
              regulation of helvolic acid biosynthetic process + 0
              regulation of lignin biosynthetic process + 0
              regulation of melanin biosynthetic process + 15
              regulation of monodictyphenone biosynthetic process + 0
              regulation of o-orsellinic acid biosynthetic process + 0
              regulation of orcinol biosynthetic process + 0
              regulation of penicillin biosynthetic process + 0
              regulation of phytoalexin biosynthetic process + 0
              regulation of polyketide biosynthetic process + 0
              regulation of proanthocyanidin biosynthetic process 0
              regulation of siderophore biosynthetic process + 0
              regulation of sinapate ester biosynthetic process + 0
              regulation of sterigmatocystin biosynthetic process + 0
              regulation of tensidol A biosynthetic process + 0
              regulation of tensidol B biosynthetic process + 0
              regulation of terrequinone A biosynthetic process + 0
              regulation of violaceol I biosynthetic process + 0
              regulation of violaceol II biosynthetic process + 0
paths to the root