regulation of secondary metabolite biosynthetic process - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	regulation of secondary metabolite biosynthetic process	go back to main search page
Accession:	GO:1900376	browse the term
Definition:	Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.
Synonyms:	exact_synonym:	regulation of secondary metabolite biosynthesis

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Rat (15) Mouse (16) Human (16) Chinchilla (15) Bonobo (15) Dog (16) Squirrel (15) Pig (14) Green Monkey (15) Naked Mole-rat (15) All
Genes (16)

negative regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

MFSD12

major facilitator superfamily domain containing 12

involved_in

IEA

Ensembl

GO_REF:0000107

NCBI chr19:3,538,275...3,557,586
Ensembl chr19:3,538,261...3,574,290

OPN3

opsin 3

involved_in

IMP

(PMID:31097585)

UniProt

PMID:31097585

NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376

RAPGEF2

Rap guanine nucleotide exchange factor 2

involved_in

ISS

UniProt

GO_REF:0000024

NCBI chr 4:159,103,079...159,360,173
Ensembl chr 4:159,103,013...159,360,174

SLC24A5

solute carrier family 24 member 5

acts_upstream_of_or_within
involved_in

ISO
IEA

(MGI:3775882|PMID:18166528)

MGI
Ensembl

PMID:18166528

GO_REF:0000107 MGI:3775882

NCBI chr15:48,120,990...48,142,672
Ensembl chr15:48,120,990...48,142,672

WNT5A

Wnt family member 5A

involved_in

IEA

Ensembl

GO_REF:0000107

NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539

positive regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

APPL1

adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1

involved_in

IMP

(PMID:21291857)

UniProt

PMID:21291857

NCBI chr 3:57,227,729...57,273,471
Ensembl chr 3:57,227,726...57,278,105

ASIP

agouti signaling protein

involved_in

IBA
IEA

(PMID:21873635)

GO_Central
Ensembl

PMID:21873635

GO_REF:0000107

NCBI chr20:34,186,493...34,269,344
Ensembl chr20:34,194,569...34,269,344

ATP7A

ATPase copper transporting alpha

involved_in

IMP

(PMID:11092760)

UniProt

PMID:11092760

NCBI chr X:77,910,693...78,050,395
Ensembl chr X:77,910,690...78,050,395

CDH3

cadherin 3

involved_in

IMP

(PMID:23334344)

UniProt

PMID:23334344

NCBI chr16:68,645,310...68,733,771
Ensembl chr16:68,636,189...68,727,468

GIPC1

GIPC PDZ domain containing family member 1

involved_in

IMP

(PMID:21291857)

UniProt

PMID:21291857

NCBI chr19:14,477,762...14,496,127
Ensembl chr19:14,477,760...14,496,149

OPN3

opsin 3

involved_in

IMP

(PMID:28842328)

UniProt

PMID:28842328

NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376

PMEL

premelanosome protein

involved_in

ISO

(MGI:5294257|PMID:21949658)

CACAO

PMID:21949658

MGI:5294257

NCBI chr12:55,954,105...55,966,709
Ensembl chr12:55,954,105...55,973,317

RAB38

RAB38, member RAS oncogene family

involved_in

ISO
IEA

RGD
Ensembl

PMID:17043139

GO_REF:0000107 RGD:152025192

NCBI chr11:87,803,715...88,175,443
Ensembl chr11:88,113,251...88,175,443

TYRP1

tyrosinase related protein 1

involved_in

IMP
IEA

(PMID:21996312)

CACAO
Ensembl

PMID:21996312

GO_REF:0000107

NCBI chr 9:12,693,385...12,710,285
Ensembl chr 9:12,685,439...12,710,285

ZEB2

zinc finger E-box binding homeobox 2

involved_in

(PMID:24769727)

BHF-UCL

PMID:24769727

NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057

regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CTNS

cystinosin, lysosomal cystine transporter

involved_in

IMP

(PMID:22649030)

UniProt

PMID:22649030

NCBI chr17:3,636,459...3,663,103
Ensembl chr17:3,636,459...3,663,103

MFSD12

major facilitator superfamily domain containing 12

involved_in

IMP
IEA

(PMID:33208952)

UniProt
Ensembl

PMID:33208952

GO_REF:0000107

NCBI chr19:3,538,275...3,557,586
Ensembl chr19:3,538,261...3,574,290

SLC7A11

solute carrier family 7 member 11

acts_upstream_of_or_within
involved_in

ISO
IEA

(MGI:3588610|PMID:16037214)

MGI
Ensembl

PMID:16037214

GO_REF:0000107 MGI:3588610

NCBI chr 4:138,164,097...138,312,671
Ensembl chr 4:138,164,097...138,242,349

Term paths to the root

Path 1
Term	Annotations
biological_process	19532
metabolic process	12880
biosynthetic process	6411
regulation of biosynthetic process	4614
regulation of secondary metabolite biosynthetic process	16
negative regulation of secondary metabolite biosynthetic process +	5
positive regulation of secondary metabolite biosynthetic process +	10
regulation of (+)-kotanin biosynthetic process +	0
regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process +	0
regulation of aflatoxin biosynthetic process +	0
regulation of arugosin biosynthetic process +	0
regulation of asperthecin biosynthetic process +	0
regulation of cordyol C biosynthetic process +	0
regulation of dehydroaustinol biosynthetic process +	0
regulation of demethylkotanin biosynthetic process +	0
regulation of diorcinol biosynthetic process +	0
regulation of emericellamide biosynthetic process +	0
regulation of emericellin biosynthetic process +	0
regulation of emodin biosynthetic process +	0
regulation of endocrocin biosynthetic process +	0
regulation of ergot alkaloid biosynthetic process +	0
regulation of fumonisin biosynthetic process +	0
regulation of gerfelin biosynthetic process +	0
regulation of gliotoxin biosynthetic process +	0
regulation of glucosinolate biosynthetic process	0
regulation of helvolic acid biosynthetic process +	0
regulation of lignin biosynthetic process +	0
regulation of melanin biosynthetic process +	16
regulation of monodictyphenone biosynthetic process +	0
regulation of o-orsellinic acid biosynthetic process +	0
regulation of orcinol biosynthetic process +	0
regulation of penicillin biosynthetic process +	0
regulation of phytoalexin biosynthetic process +	0
regulation of polyketide biosynthetic process +	0
regulation of proanthocyanidin biosynthetic process	0
regulation of siderophore biosynthetic process +	0
regulation of sinapate ester biosynthetic process +	0
regulation of sterigmatocystin biosynthetic process +	0
regulation of tensidol A biosynthetic process +	0
regulation of tensidol B biosynthetic process +	0
regulation of violaceol I biosynthetic process +	0
regulation of violaceol II biosynthetic process +	0
Path 2
Term	Annotations
biological_process	19532
biological regulation	13408
regulation of biological process	12995
regulation of metabolic process	7755
regulation of secondary metabolic process	16
regulation of secondary metabolite biosynthetic process	16
negative regulation of secondary metabolite biosynthetic process +	5
positive regulation of secondary metabolite biosynthetic process +	10
regulation of (+)-kotanin biosynthetic process +	0
regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process +	0
regulation of aflatoxin biosynthetic process +	0
regulation of arugosin biosynthetic process +	0
regulation of asperthecin biosynthetic process +	0
regulation of cordyol C biosynthetic process +	0
regulation of dehydroaustinol biosynthetic process +	0
regulation of demethylkotanin biosynthetic process +	0
regulation of diorcinol biosynthetic process +	0
regulation of emericellamide biosynthetic process +	0
regulation of emericellin biosynthetic process +	0
regulation of emodin biosynthetic process +	0
regulation of endocrocin biosynthetic process +	0
regulation of ergot alkaloid biosynthetic process +	0
regulation of fumonisin biosynthetic process +	0
regulation of gerfelin biosynthetic process +	0
regulation of gliotoxin biosynthetic process +	0
regulation of glucosinolate biosynthetic process	0
regulation of helvolic acid biosynthetic process +	0
regulation of lignin biosynthetic process +	0
regulation of melanin biosynthetic process +	16
regulation of monodictyphenone biosynthetic process +	0
regulation of o-orsellinic acid biosynthetic process +	0
regulation of orcinol biosynthetic process +	0
regulation of penicillin biosynthetic process +	0
regulation of phytoalexin biosynthetic process +	0
regulation of polyketide biosynthetic process +	0
regulation of proanthocyanidin biosynthetic process	0
regulation of siderophore biosynthetic process +	0
regulation of sinapate ester biosynthetic process +	0
regulation of sterigmatocystin biosynthetic process +	0
regulation of tensidol A biosynthetic process +	0
regulation of tensidol B biosynthetic process +	0
regulation of violaceol I biosynthetic process +	0
regulation of violaceol II biosynthetic process +	0

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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ONTOLOGY REPORT - ANNOTATIONS