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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of secondary metabolite biosynthetic process
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Accession:GO:1900376 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.
Synonyms:exact_synonym: regulation of secondary metabolite biosynthesis


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negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in ISO (MGI:5912387|PMID:29025994) CACAO PMID:29025994 MGI:5912387 NCBI chr19:2,570,068...2,583,505
Ensembl chr19:3,520,399...3,532,767
JBrowse link
G OPN3 opsin 3 involved_in ISO (PMID:31097585) UniProt PMID:31097585 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:5499726|PMID:16272156) UniProt PMID:16272156 MGI:5499726 NCBI chr 4:151,419,402...151,680,769
Ensembl chr 4:163,316,396...163,487,495
JBrowse link
G SLC24A5 solute carrier family 24 member 5 acts_upstream_of_or_within ISO (MGI:3775882|PMID:18166528) MGI PMID:18166528 MGI:3775882 NCBI chr15:27,069,937...27,091,619
Ensembl chr15:45,394,090...45,415,823
JBrowse link
G WNT5A Wnt family member 5A involved_in ISO (MGI:5619434|PMID:23569434) CACAO PMID:23569434 MGI:5619434 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:21291857) UniProt PMID:21291857 NCBI chr 3:57,161,299...57,206,672
Ensembl chr 3:58,370,430...58,415,258
JBrowse link
G ASIP agouti signaling protein involved_in ISO (MGI:5294257|PMID:21949658) CACAO PMID:21949658 MGI:5294257 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G ATP7A ATPase copper transporting alpha involved_in ISO (PMID:11092760) UniProt PMID:11092760 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756
JBrowse link
G CDH3 cadherin 3 involved_in ISO (PMID:23334344) UniProt PMID:23334344 NCBI chr16:49,015,115...49,071,903
Ensembl chr16:68,407,625...68,465,287
JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in ISO (PMID:21291857) UniProt PMID:21291857 NCBI chr19:14,041,192...14,059,402
Ensembl chr19:14,885,185...14,889,701
JBrowse link
G OPN3 opsin 3 involved_in ISO (PMID:28842328) UniProt PMID:28842328 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G PMEL premelanosome protein involved_in ISO (MGI:5294257|PMID:21949658) CACAO PMID:21949658 MGI:5294257 NCBI chr12:32,946,951...32,958,205
Ensembl chr12:33,196,040...33,207,610
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in ISO (PMID:21996312)
(MGI:5294257|PMID:21949658)
CACAO PMID:21949658 PMID:21996312 MGI:5294257 NCBI chr 9:12,502,610...12,550,203
Ensembl chr 9:12,950,831...12,996,799
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNS cystinosin, lysosomal cystine transporter involved_in ISO (PMID:22649030) UniProt PMID:22649030 NCBI chr17:3,686,903...3,711,857
Ensembl chr17:3,683,575...3,708,253
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in ISO (PMID:31117290)
(MGI:6492453|PMID:33208952)
(PMID:33208952)
UniProt PMID:31117290 PMID:33208952 MGI:6492453 NCBI chr19:2,570,068...2,583,505
Ensembl chr19:3,520,399...3,532,767
JBrowse link
G SLC7A11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (MGI:3588610|PMID:16037214) MGI PMID:16037214 MGI:3588610 NCBI chr 4:130,529,677...130,601,396
Ensembl chr 4:141,849,343...141,959,849
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12613
    metabolic process 7889
      biosynthetic process 4044
        regulation of biosynthetic process 3029
          regulation of secondary metabolite biosynthetic process 14
            negative regulation of secondary metabolite biosynthetic process + 5
            positive regulation of secondary metabolite biosynthetic process + 8
            regulation of (+)-kotanin biosynthetic process + 0
            regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
            regulation of aflatoxin biosynthetic process + 0
            regulation of arugosin biosynthetic process + 0
            regulation of asperthecin biosynthetic process + 0
            regulation of brevianamide F biosynthetic process + 0
            regulation of cordyol C biosynthetic process + 0
            regulation of dehydroaustinol biosynthetic process + 0
            regulation of demethylkotanin biosynthetic process + 0
            regulation of diorcinol biosynthetic process + 0
            regulation of emericellamide biosynthetic process + 0
            regulation of emericellin biosynthetic process + 0
            regulation of emodin biosynthetic process + 0
            regulation of endocrocin biosynthetic process + 0
            regulation of ergot alkaloid biosynthetic process + 0
            regulation of fumitremorgin B biosynthetic process + 0
            regulation of fumonisin biosynthetic process + 0
            regulation of gerfelin biosynthetic process + 0
            regulation of gliotoxin biosynthetic process + 0
            regulation of glucosinolate biosynthetic process 0
            regulation of helvolic acid biosynthetic process + 0
            regulation of lignin biosynthetic process + 0
            regulation of melanin biosynthetic process + 14
            regulation of monodictyphenone biosynthetic process + 0
            regulation of o-orsellinic acid biosynthetic process + 0
            regulation of orcinol biosynthetic process + 0
            regulation of penicillin biosynthetic process + 0
            regulation of phytoalexin biosynthetic process + 0
            regulation of polyketide biosynthetic process + 0
            regulation of proanthocyanidin biosynthetic process 0
            regulation of siderophore biosynthetic process + 0
            regulation of sinapate ester biosynthetic process + 0
            regulation of sterigmatocystin biosynthetic process + 0
            regulation of tensidol A biosynthetic process + 0
            regulation of tensidol B biosynthetic process + 0
            regulation of terrequinone A biosynthetic process + 0
            regulation of violaceol I biosynthetic process + 0
            regulation of violaceol II biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 12613
    biological regulation 9191
      regulation of biological process 8687
        regulation of metabolic process 5154
          regulation of secondary metabolic process 14
            regulation of secondary metabolite biosynthetic process 14
              negative regulation of secondary metabolite biosynthetic process + 5
              positive regulation of secondary metabolite biosynthetic process + 8
              regulation of (+)-kotanin biosynthetic process + 0
              regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
              regulation of aflatoxin biosynthetic process + 0
              regulation of arugosin biosynthetic process + 0
              regulation of asperthecin biosynthetic process + 0
              regulation of brevianamide F biosynthetic process + 0
              regulation of cordyol C biosynthetic process + 0
              regulation of dehydroaustinol biosynthetic process + 0
              regulation of demethylkotanin biosynthetic process + 0
              regulation of diorcinol biosynthetic process + 0
              regulation of emericellamide biosynthetic process + 0
              regulation of emericellin biosynthetic process + 0
              regulation of emodin biosynthetic process + 0
              regulation of endocrocin biosynthetic process + 0
              regulation of ergot alkaloid biosynthetic process + 0
              regulation of fumitremorgin B biosynthetic process + 0
              regulation of fumonisin biosynthetic process + 0
              regulation of gerfelin biosynthetic process + 0
              regulation of gliotoxin biosynthetic process + 0
              regulation of glucosinolate biosynthetic process 0
              regulation of helvolic acid biosynthetic process + 0
              regulation of lignin biosynthetic process + 0
              regulation of melanin biosynthetic process + 14
              regulation of monodictyphenone biosynthetic process + 0
              regulation of o-orsellinic acid biosynthetic process + 0
              regulation of orcinol biosynthetic process + 0
              regulation of penicillin biosynthetic process + 0
              regulation of phytoalexin biosynthetic process + 0
              regulation of polyketide biosynthetic process + 0
              regulation of proanthocyanidin biosynthetic process 0
              regulation of siderophore biosynthetic process + 0
              regulation of sinapate ester biosynthetic process + 0
              regulation of sterigmatocystin biosynthetic process + 0
              regulation of tensidol A biosynthetic process + 0
              regulation of tensidol B biosynthetic process + 0
              regulation of terrequinone A biosynthetic process + 0
              regulation of violaceol I biosynthetic process + 0
              regulation of violaceol II biosynthetic process + 0
paths to the root