regulation of secondary metabolite biosynthetic process - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	regulation of secondary metabolite biosynthetic process	go back to main search page
Accession:	GO:1900376	browse the term
Definition:	Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.
Synonyms:	exact_synonym:	regulation of secondary metabolite biosynthesis

show annotations for term's descendants Sort by:
Rat (15) Mouse (16) Human (16) Chinchilla (15) Bonobo (15) Dog (16) Squirrel (15) Pig (14) Green Monkey (15) Naked Mole-rat (15) All
Genes (15)

negative regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Mfsd12

major facilitator superfamily domain containing 12

involved_in

ISO

(MGI:5912387|PMID:29025994)

RGD

PMID:29025994

MGI:5912387

NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988

Opn3

opsin 3

involved_in

ISO

(PMID:31097585)

RGD

PMID:31097585

NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847

Rapgef2

Rap guanine nucleotide exchange factor 2

involved_in

ISS
ISO

GO_REF:0000024
(MGI:5499726|PMID:16272156)

UniProt
RGD

PMID:16272156

GO_REF:0000024 MGI:5499726

NCBI chr 2:164,207,513...164,322,157
Ensembl chr 2:164,207,513...164,244,247

Slc24a5

solute carrier family 24 member 5

acts_upstream_of_or_within

ISO

(MGI:3775882|PMID:18166528)

RGD

PMID:18166528

MGI:3775882

NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231

Wnt5a

Wnt family member 5A

involved_in

ISO

(MGI:5619434|PMID:23569434)

RGD

PMID:23569434

MGI:5619434

NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234

positive regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Appl1

adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1

involved_in

ISO

(PMID:21291857)

RGD

PMID:21291857

NCBI chr16:2,118,503...2,166,741
Ensembl chr16:2,121,255...2,166,692

Asip

agouti signaling protein

involved_in

IBA
IEA
ISO

PMID:21873635
GO_REF:0000107
UniProtKB:P07147|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)

Ensembl
RGD

PMID:21949658 PMID:21873635

GO_REF:0000107 MGI:5294257, RGD:13792537

NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171

Atp7a

ATPase copper transporting alpha

involved_in

ISS
ISO

GO_REF:0000024
(PMID:11092760)

UniProt
RGD

PMID:11092760

GO_REF:0000024

NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354

Cdh3

cadherin 3

involved_in

ISO

(PMID:23334344)

RGD

PMID:23334344

NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084

Gipc1

GIPC PDZ domain containing family, member 1

involved_in

ISS
ISO

GO_REF:0000024
(PMID:21291857)

UniProt
RGD

PMID:21291857

GO_REF:0000024

NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997

Opn3

opsin 3

involved_in

ISO

(PMID:28842328)

RGD

PMID:28842328

NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847

Pmel

premelanosome protein

involved_in

ISO

(MGI:5294257|PMID:21949658)

RGD

PMID:21949658

MGI:5294257

NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746

Rab38

RAB38, member RAS oncogene family

IMP

RGD

PMID:17043139

RGD:152025192

NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924

Tyrp1

tyrosinase-related protein 1

involved_in

ISO

(PMID:21996312)
UniProtKB:Q03288|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)

RGD

PMID:21949658 PMID:21996312

MGI:5294257

NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516

regulation of melanin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ctns

cystinosin, lysosomal cystine transporter

involved_in

ISO

(PMID:22649030)

RGD

PMID:22649030

NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120

Mfsd12

major facilitator superfamily domain containing 12

involved_in

ISO

(PMID:33208952)
(MGI:6492453|PMID:33208952)
(PMID:31117290)

RGD

PMID:31117290 PMID:33208952

MGI:6492453

NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988

Slc7a11

solute carrier family 7 member 11

acts_upstream_of_or_within

ISO

MGI:1857061 (MGI:3588610|PMID:16037214)

RGD

PMID:16037214

MGI:3588610

NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536

Term paths to the root

Path 1
Term	Annotations
biological_process	19748
metabolic process	12047
biosynthetic process	6263
regulation of biosynthetic process	4174
regulation of secondary metabolite biosynthetic process	15
negative regulation of secondary metabolite biosynthetic process +	5
positive regulation of secondary metabolite biosynthetic process +	9
regulation of (+)-kotanin biosynthetic process +	0
regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process +	0
regulation of aflatoxin biosynthetic process +	0
regulation of arugosin biosynthetic process +	0
regulation of asperthecin biosynthetic process +	0
regulation of cordyol C biosynthetic process +	0
regulation of dehydroaustinol biosynthetic process +	0
regulation of demethylkotanin biosynthetic process +	0
regulation of diorcinol biosynthetic process +	0
regulation of emericellamide biosynthetic process +	0
regulation of emericellin biosynthetic process +	0
regulation of emodin biosynthetic process +	0
regulation of endocrocin biosynthetic process +	0
regulation of ergot alkaloid biosynthetic process +	0
regulation of fumonisin biosynthetic process +	0
regulation of gerfelin biosynthetic process +	0
regulation of gliotoxin biosynthetic process +	0
regulation of glucosinolate biosynthetic process	0
regulation of helvolic acid biosynthetic process +	0
regulation of lignin biosynthetic process +	0
regulation of melanin biosynthetic process +	15
regulation of monodictyphenone biosynthetic process +	0
regulation of o-orsellinic acid biosynthetic process +	0
regulation of orcinol biosynthetic process +	0
regulation of penicillin biosynthetic process +	0
regulation of phytoalexin biosynthetic process +	0
regulation of polyketide biosynthetic process +	0
regulation of proanthocyanidin biosynthetic process	0
regulation of siderophore biosynthetic process +	0
regulation of sinapate ester biosynthetic process +	0
regulation of sterigmatocystin biosynthetic process +	0
regulation of tensidol A biosynthetic process +	0
regulation of tensidol B biosynthetic process +	0
regulation of violaceol I biosynthetic process +	0
regulation of violaceol II biosynthetic process +	0
Path 2
Term	Annotations
biological_process	19748
biological regulation	13456
regulation of biological process	13044
regulation of metabolic process	6834
regulation of secondary metabolic process	15
regulation of secondary metabolite biosynthetic process	15
negative regulation of secondary metabolite biosynthetic process +	5
positive regulation of secondary metabolite biosynthetic process +	9
regulation of (+)-kotanin biosynthetic process +	0
regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process +	0
regulation of aflatoxin biosynthetic process +	0
regulation of arugosin biosynthetic process +	0
regulation of asperthecin biosynthetic process +	0
regulation of cordyol C biosynthetic process +	0
regulation of dehydroaustinol biosynthetic process +	0
regulation of demethylkotanin biosynthetic process +	0
regulation of diorcinol biosynthetic process +	0
regulation of emericellamide biosynthetic process +	0
regulation of emericellin biosynthetic process +	0
regulation of emodin biosynthetic process +	0
regulation of endocrocin biosynthetic process +	0
regulation of ergot alkaloid biosynthetic process +	0
regulation of fumonisin biosynthetic process +	0
regulation of gerfelin biosynthetic process +	0
regulation of gliotoxin biosynthetic process +	0
regulation of glucosinolate biosynthetic process	0
regulation of helvolic acid biosynthetic process +	0
regulation of lignin biosynthetic process +	0
regulation of melanin biosynthetic process +	15
regulation of monodictyphenone biosynthetic process +	0
regulation of o-orsellinic acid biosynthetic process +	0
regulation of orcinol biosynthetic process +	0
regulation of penicillin biosynthetic process +	0
regulation of phytoalexin biosynthetic process +	0
regulation of polyketide biosynthetic process +	0
regulation of proanthocyanidin biosynthetic process	0
regulation of siderophore biosynthetic process +	0
regulation of sinapate ester biosynthetic process +	0
regulation of sterigmatocystin biosynthetic process +	0
regulation of tensidol A biosynthetic process +	0
regulation of tensidol B biosynthetic process +	0
regulation of violaceol I biosynthetic process +	0
regulation of violaceol II biosynthetic process +	0

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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ONTOLOGY REPORT - ANNOTATIONS