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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of secondary metabolite biosynthetic process
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Accession:GO:1900376 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.
Synonyms:exact_synonym: regulation of secondary metabolite biosynthesis


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negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (MGI:5912387|PMID:29025994) RGD PMID:29025994 MGI:5912387 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5499726|PMID:16272156)
UniProt
RGD
PMID:16272156 GO_REF:0000024 MGI:5499726 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Slc24a5 solute carrier family 24 member 5 acts_upstream_of_or_within ISO (MGI:3775882|PMID:18166528) RGD PMID:18166528 MGI:3775882 NCBI chr 3:117,335,212...117,354,480
Ensembl chr 3:117,335,212...117,354,480
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
(MGI:5619434|PMID:23569434)
Ensembl
RGD
PMID:23569434 GO_REF:0000107 MGI:5619434 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:21291857) RGD PMID:21291857 NCBI chr16:2,560,103...2,602,035
Ensembl chr16:2,563,520...2,602,103
JBrowse link
G Asip agouti signaling protein involved_in IBA
ISO
PMID:21873635
UniProtKB:P07147|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)
RGD PMID:21949658, PMID:21873635 MGI:5294257, RGD:13792537 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Atp7a ATPase copper transporting alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:11092760)
UniProt
RGD
PMID:11092760 GO_REF:0000024 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21291857)
UniProt
RGD
PMID:21291857 GO_REF:0000024 NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:28842328) RGD PMID:28842328 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994
JBrowse link
G Pmel premelanosome protein involved_in ISO (MGI:5294257|PMID:21949658) RGD PMID:21949658 MGI:5294257 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in ISO (PMID:21996312)
UniProtKB:Q03288|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)
RGD PMID:21949658 PMID:21996312 MGI:5294257 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosin, lysosomal cystine transporter involved_in ISO
IEA
(PMID:22649030)
GO_REF:0000107
RGD
Ensembl
PMID:22649030 GO_REF:0000107 NCBI chr10:59,749,250...59,772,475
Ensembl chr10:59,749,256...59,764,868
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (PMID:33208952)
(MGI:6492453|PMID:33208952)
(PMID:31117290)
RGD PMID:31117290 PMID:33208952 MGI:6492453 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (MGI:3588610|PMID:16037214) RGD PMID:16037214 MGI:3588610 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    metabolic process 11881
      biosynthetic process 6187
        regulation of biosynthetic process 4077
          regulation of secondary metabolite biosynthetic process 14
            negative regulation of secondary metabolite biosynthetic process + 5
            positive regulation of secondary metabolite biosynthetic process + 8
            regulation of (+)-kotanin biosynthetic process + 0
            regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
            regulation of aflatoxin biosynthetic process + 0
            regulation of arugosin biosynthetic process + 0
            regulation of asperthecin biosynthetic process + 0
            regulation of brevianamide F biosynthetic process + 0
            regulation of cordyol C biosynthetic process + 0
            regulation of dehydroaustinol biosynthetic process + 0
            regulation of demethylkotanin biosynthetic process + 0
            regulation of diorcinol biosynthetic process + 0
            regulation of emericellamide biosynthetic process + 0
            regulation of emericellin biosynthetic process + 0
            regulation of emodin biosynthetic process + 0
            regulation of endocrocin biosynthetic process + 0
            regulation of ergot alkaloid biosynthetic process + 0
            regulation of fumitremorgin B biosynthetic process + 0
            regulation of fumonisin biosynthetic process + 0
            regulation of gerfelin biosynthetic process + 0
            regulation of gliotoxin biosynthetic process + 0
            regulation of glucosinolate biosynthetic process 0
            regulation of helvolic acid biosynthetic process + 0
            regulation of lignin biosynthetic process + 0
            regulation of melanin biosynthetic process + 14
            regulation of monodictyphenone biosynthetic process + 0
            regulation of o-orsellinic acid biosynthetic process + 0
            regulation of orcinol biosynthetic process + 0
            regulation of penicillin biosynthetic process + 0
            regulation of phytoalexin biosynthetic process + 0
            regulation of polyketide biosynthetic process + 0
            regulation of proanthocyanidin biosynthetic process 0
            regulation of siderophore biosynthetic process + 0
            regulation of sinapate ester biosynthetic process + 0
            regulation of sterigmatocystin biosynthetic process + 0
            regulation of tensidol A biosynthetic process + 0
            regulation of tensidol B biosynthetic process + 0
            regulation of terrequinone A biosynthetic process + 0
            regulation of violaceol I biosynthetic process + 0
            regulation of violaceol II biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19612
    biological regulation 13584
      regulation of biological process 12857
        regulation of metabolic process 6807
          regulation of secondary metabolic process 14
            regulation of secondary metabolite biosynthetic process 14
              negative regulation of secondary metabolite biosynthetic process + 5
              positive regulation of secondary metabolite biosynthetic process + 8
              regulation of (+)-kotanin biosynthetic process + 0
              regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
              regulation of aflatoxin biosynthetic process + 0
              regulation of arugosin biosynthetic process + 0
              regulation of asperthecin biosynthetic process + 0
              regulation of brevianamide F biosynthetic process + 0
              regulation of cordyol C biosynthetic process + 0
              regulation of dehydroaustinol biosynthetic process + 0
              regulation of demethylkotanin biosynthetic process + 0
              regulation of diorcinol biosynthetic process + 0
              regulation of emericellamide biosynthetic process + 0
              regulation of emericellin biosynthetic process + 0
              regulation of emodin biosynthetic process + 0
              regulation of endocrocin biosynthetic process + 0
              regulation of ergot alkaloid biosynthetic process + 0
              regulation of fumitremorgin B biosynthetic process + 0
              regulation of fumonisin biosynthetic process + 0
              regulation of gerfelin biosynthetic process + 0
              regulation of gliotoxin biosynthetic process + 0
              regulation of glucosinolate biosynthetic process 0
              regulation of helvolic acid biosynthetic process + 0
              regulation of lignin biosynthetic process + 0
              regulation of melanin biosynthetic process + 14
              regulation of monodictyphenone biosynthetic process + 0
              regulation of o-orsellinic acid biosynthetic process + 0
              regulation of orcinol biosynthetic process + 0
              regulation of penicillin biosynthetic process + 0
              regulation of phytoalexin biosynthetic process + 0
              regulation of polyketide biosynthetic process + 0
              regulation of proanthocyanidin biosynthetic process 0
              regulation of siderophore biosynthetic process + 0
              regulation of sinapate ester biosynthetic process + 0
              regulation of sterigmatocystin biosynthetic process + 0
              regulation of tensidol A biosynthetic process + 0
              regulation of tensidol B biosynthetic process + 0
              regulation of terrequinone A biosynthetic process + 0
              regulation of violaceol I biosynthetic process + 0
              regulation of violaceol II biosynthetic process + 0
paths to the root