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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
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Accession:GO:1900153 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay.
Synonyms:exact_synonym: positive regulation of deadenylation-dependent mRNA decay;   positive regulation of mRNA breakdown, deadenylation-dependent decay;   positive regulation of mRNA catabolic process, deadenylation-dependent;   positive regulation of mRNA catabolic process, deadenylylation-dependent;   positive regulation of mRNA catabolism, deadenylation-dependent;   positive regulation of mRNA catabolism, deadenylylation-dependent;   positive regulation of mRNA degradation, deadenylation-dependent decay;   positive regulation of nuclear mRNA catabolic process, deadenylation-dependent decay;   up regulation of deadenylation-dependent mRNA decay;   up regulation of mRNA breakdown, deadenylation-dependent decay;   up regulation of mRNA catabolic process, deadenylation-dependent;   up regulation of mRNA catabolic process, deadenylylation-dependent;   up regulation of mRNA catabolism, deadenylation-dependent;   up regulation of mRNA catabolism, deadenylylation-dependent;   up regulation of mRNA degradation, deadenylation-dependent decay;   up regulation of nuclear mRNA catabolic process, deadenylation-dependent decay;   up regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;   upregulation of deadenylation-dependent mRNA decay;   upregulation of mRNA breakdown, deadenylation-dependent decay;   upregulation of mRNA catabolic process, deadenylation-dependent;   upregulation of mRNA catabolic process, deadenylylation-dependent;   upregulation of mRNA catabolism, deadenylation-dependent;   upregulation of mRNA catabolism, deadenylylation-dependent;   upregulation of mRNA degradation, deadenylation-dependent decay;   upregulation of nuclear mRNA catabolic process, deadenylation-dependent decay;   upregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
 narrow_synonym: activation of deadenylation-dependent mRNA decay;   activation of mRNA breakdown, deadenylation-dependent decay;   activation of mRNA catabolic process, deadenylation-dependent;   activation of mRNA catabolic process, deadenylylation-dependent;   activation of mRNA catabolism, deadenylation-dependent;   activation of mRNA catabolism, deadenylylation-dependent;   activation of mRNA degradation, deadenylation-dependent decay;   activation of nuclear mRNA catabolic process, deadenylation-dependent decay;   activation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay


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positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1624291
G Nanos1 nanos C2HC-type zinc finger 1 JBrowse link 1 282,134,676 282,140,370 RGD:1624291
G Nanos2 nanos C2HC-type zinc finger 2 JBrowse link 1 79,894,450 79,895,910 RGD:1624291
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link 19 25,284,907 25,288,680 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344945
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1600115
RGD:1624291
G Btg2 BTG anti-proliferation factor 2 JBrowse link 13 50,913,185 50,916,944 RGD:1624291
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
G Tnrc6a trinucleotide repeat containing adaptor 6A JBrowse link 1 192,991,584 193,146,403 RGD:13792537
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
RGD:13792537
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
RGD:13792537
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      catabolic process 2515
        positive regulation of catabolic process 479
          positive regulation of cellular catabolic process 411
            positive regulation of mRNA catabolic process 50
              positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 18
                positive regulation of exonucleolytic catabolism of deadenylated mRNA 0
                positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 12
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA catabolic process 261
                  mRNA catabolic process 225
                    nuclear-transcribed mRNA catabolic process 112
                      nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 53
                        regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 20
                          positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 18
                            positive regulation of exonucleolytic catabolism of deadenylated mRNA 0
                            positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.