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ONTOLOGY REPORT - ANNOTATIONS

Term:co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
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Accession:GO:0180010 term browser browse the term
Definition:Any process involved in transcription termination-coupled 3' processing of RNA polymerase II mRNA transcripts by the 3' end cleavage and addition of a poly(A) tail.
Synonyms:exact_synonym: cotranscriptional 3' processing of RNA polymerase II mRNA transcripts
 related_synonym: mRNA polyadenylation


show annotations for term's descendants           Sort by:
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IEA 		(PMID:8929409)
GO_REF:0000107 		RGD
Ensembl		 PMID:8929409 GO_REF:0000107 NCBI chr 6:46,564,855...46,592,776
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO
IEA 		(PMID:29276085)
GO_REF:0000107 		RGD
Ensembl		 PMID:29276085 GO_REF:0000107 NCBI chr 7:54,798,452...54,887,711
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
ISS
IEA 		(PMID:29276085)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:29276085 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in ISO
IEA 		(PMID:7984242)
GO_REF:0000107 		RGD
Ensembl		 PMID:7984242 GO_REF:0000107 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
ISS 		(PMID:29276085)
GO_REF:0000024 		RGD
UniProt		 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO
IEA 		(PMID:19224921)
GO_REF:0000107 		RGD
Ensembl		 PMID:19224921 GO_REF:0000107 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20861839)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20861839 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:21102410)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:21102410 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          RNA processing 1002
            RNA 3'-end processing 99
              mRNA 3'-end processing 47
                co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway 8
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleic acid metabolic process 5283
              RNA metabolic process 4695
                RNA biosynthetic process 4407
                  RNA processing 1002
                    RNA 3'-end processing 99
                      mRNA 3'-end processing 47
                        co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway 8
paths to the root