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ONTOLOGY REPORT - ANNOTATIONS

Term:visual system development
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Accession:GO:0150063 term browser browse the term
Definition:The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways.
Synonyms:related_synonym: optic pathway development;   visual pathway development

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visual system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2ry12 purinergic receptor P2Y12 ISO (MGI:5806217|PMID:26948129) ARUK-UCL PMID:26948129 MGI:5806217 NCBI chrNW_004936758:1,581,828...1,624,332 JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chrNW_004936769:1,061,907...1,081,350 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936686:1,459,582...1,556,478 JBrowse link
G Neurod1 neuronal differentiation 1 ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chrNW_004936509:10,421,821...10,425,927 JBrowse link
G Neurod4 neuronal differentiation 4 ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chrNW_004936891:471,576...482,195 JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004936520:4,978,896...4,980,648 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 ISO (MGI:3525751|PMID:15572692) MGI PMID:15572692 MGI:3525751 NCBI chrNW_004936631:30,109...101,748 JBrowse link
G Ahr aryl hydrocarbon receptor ISO (MGI:1889403|PMID:10973493) DFLAT PMID:10973493 MGI:1889403 NCBI chrNW_004936546:3,737,908...3,783,492 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:3612223|PMID:16368932)
(MGI:3055706|PMID:15366004)		 MGI PMID:15366004 PMID:16368932 MGI:3055706 MGI:3612223 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Arhgap35 Rho GTPase activating protein 35 ISO (MGI:1926242|PMID:11044403) MGI PMID:11044403 MGI:1926242 NCBI chrNW_004936664:714,036...788,584 JBrowse link
G B9d1 B9 domain containing 1 ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chrNW_004936881:396,930...411,059 JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (MGI:3043486|PMID:14681194)
(MGI:1095762|PMID:9268572)		 MGI PMID:9268572 PMID:14681194 MGI:1095762 MGI:3043486 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (MGI:3574003|PMID:15673568) MGI PMID:15673568 MGI:3574003 NCBI chrNW_004936687:2,346,601...2,595,283 JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004936606:2,168,104...2,867,560 JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chrNW_004936477:12,315,829...12,415,915 JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO (MGI:3611161|PMID:16207732) MGI PMID:16207732 MGI:3611161 NCBI chrNW_004936496:12,381,225...12,505,121 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:2682441|PMID:12546709) MGI PMID:12546709 MGI:2682441 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Cryab crystallin alpha B ISO (MGI:2682441|PMID:12546709) MGI PMID:12546709 MGI:2682441 NCBI chrNW_004936612:2,532,851...2,536,473 JBrowse link
G Cryba1 crystallin beta A1 ISO (MGI:1350675|PMID:10585769) MGI PMID:10585769 MGI:1350675 NCBI chrNW_004936538:5,392,159...5,400,583 JBrowse link
G Cryba4 crystallin beta A4 involved_in ISO (PMID:16960806) UniProt PMID:16960806 NCBI chrNW_004936657:1,213,487...1,220,376 JBrowse link
G Crybb2 crystallin beta B2 ISO (MGI:2137502|PMID:11381063) RGD
MGI		 PMID:8706714 PMID:11381063 MGI:2137502 RGD:1298813 NCBI chrNW_004936657:326,888...336,474 JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936491:2,159,654...2,214,480 JBrowse link
G Fat1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chrNW_004936554:2,872,729...2,996,821 JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936471:10,747,030...10,969,223 JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936504:1,535,629...1,757,386 JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 ISO (MGI:3039989|PMID:15105374) MGI PMID:15105374 MGI:3039989 NCBI chrNW_004936596:2,728,089...2,735,718 JBrowse link
G Foxc2 forkhead box C2 ISO (MGI:1355577|PMID:10767326) MGI PMID:10767326 MGI:1355577 NCBI chrNW_004936641:2,236,224...2,238,501 JBrowse link
G Foxe3 forkhead box E3 ISO (MGI:1932584|PMID:11309658) MGI PMID:11309658 MGI:1932584 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Foxp2 forkhead box P2 ISO (MGI:3723373|PMID:17619227) MGI PMID:17619227 MGI:3723373 NCBI chrNW_004936589:4,120,162...4,661,258 JBrowse link
G Gja8 gap junction protein alpha 8 ISO (MGI:2156142|PMID:11782410)
(MGI:3047041|PMID:15253273)		 MGI PMID:11782410 PMID:15253273 MGI:2156142 MGI:3047041 NCBI chrNW_004936867:374,638...378,080 JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chrNW_004936469:21,705,421...21,833,143 JBrowse link
G Grhl2 grainyhead like transcription factor 2 ISO (MGI:4943100|PMID:21377456) MGI PMID:21377456 MGI:4943100 NCBI chrNW_004936470:41,856,683...41,961,666 JBrowse link
G Hes5 hes family bHLH transcription factor 5 ISO (MGI:3703278|PMID:17331197) UniProt PMID:17331197 MGI:3703278 NCBI chrNW_004936737:1,045,496...1,047,865 JBrowse link
G Hesx1 HESX homeobox 1 ISO (MGI:3821905|PMID:19093031) MGI PMID:19093031 MGI:3821905 NCBI chrNW_004936473:7,545,982...7,572,222 JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chrNW_004936828:827,660...839,088 JBrowse link
G Hsf4 heat shock transcription factor 4 ISO (MGI:3056833|PMID:15483628)
(MGI:3721138|PMID:16595169)		 MGI PMID:15483628 PMID:16595169 MGI:3056833 MGI:3721138 NCBI chrNW_004936475:17,638,785...17,643,786 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO (MGI:1336582|PMID:10196361) MGI PMID:10196361 MGI:1336582 NCBI chrNW_004936485:8,857,688...8,894,270 JBrowse link
G Lim2 lens intrinsic membrane protein 2 ISO (MGI:1197732|PMID:9238094) MGI PMID:9238094 MGI:1197732 NCBI chrNW_004937378:46,650...48,619 JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO (MGI:4461349|PMID:20568247)
(MGI:1353150|PMID:10660670)		 MGI PMID:10660670 PMID:20568247 MGI:1353150 MGI:4461349 NCBI chrNW_004936487:14,513,303...14,587,771 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO RGD PMID:15967433 RGD:2306661 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
G Mab21l1 mab-21 like 1 ISO (MGI:2652201|PMID:12642482) MGI PMID:12642482 MGI:2652201 NCBI chrNW_004936472:29,703,635...29,706,904 JBrowse link
G Mab21l2 mab-21 like 2 ISO (MGI:3510098|PMID:15385160) MGI PMID:15385160 MGI:3510098 NCBI chrNW_004936689:694,119...696,840 JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:2674169|PMID:12941696) MGI PMID:12941696 MGI:2674169 NCBI chrNW_004936480:11,082,811...11,156,691 JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:2682174|PMID:14500757) MGI PMID:14500757 MGI:2682174 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Mitf melanocyte inducing transcription factor ISO (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chrNW_004936603:1,682,411...1,858,295 JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 ISO (MGI:5287350|PMID:21531335) MGI PMID:21531335 MGI:5287350 NCBI chrNW_004936745:705,448...709,429 JBrowse link
G Mtnr1a melatonin receptor 1A ISO RGD PMID:12890503 RGD:9588674 NCBI chrNW_004936554:3,013,106...3,047,171 JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:12890503 RGD:9588674 NCBI chrNW_004936674:1,703,814...1,713,860 JBrowse link
G Myf5 myogenic factor 5 ISO (MGI:3849775|PMID:19531352) MGI PMID:19531352 MGI:3849775 NCBI chrNW_004936698:1,609,227...1,611,283 JBrowse link
G Neurod1 neuronal differentiation 1 ISO (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chrNW_004936509:10,421,821...10,425,927 JBrowse link
G Neurod4 neuronal differentiation 4 ISO (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chrNW_004936891:471,576...482,195 JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:3582135|PMID:16000615)
(MGI:3054148|PMID:15371513)		 MGI PMID:15371513 PMID:16000615 MGI:3054148 MGI:3582135 NCBI chrNW_004936564:4,432,556...4,453,056 JBrowse link
G Pax2 paired box 2 ISO (MGI:2662558|PMID:12756174) MGI PMID:12756174 MGI:2662558 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Pax6 paired box 6 ISO (MGI:2181466|PMID:12072567)
(MGI:2662558|PMID:12756174)
(MGI:2654287|PMID:12648492), (MGI:3584303|PMID:16080917)
(MGI:2384485|PMID:12183364)
(MGI:1927276|PMID:11069887)
(MGI:1928799|PMID:11062307)		 MGI PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 PMID:12756174 PMID:16080917 MGI:1927276 MGI:1928799 MGI:2181466 MGI:2384485 MGI:2654287 MGI:2662558 MGI:3584303 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pcnt pericentrin ISO (MGI:5696764|PMID:25220058) MGI PMID:25220058 MGI:5696764 NCBI chrNW_004936778:149,844...248,905 JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:9618168) BHF-UCL PMID:9618168 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 ISO (MGI:3653971|PMID:16847320) MGI PMID:16847320 MGI:3653971 NCBI chrNW_004936500:1,018,414...1,055,221 JBrowse link
G Prss56 serine protease 56 involved_in ISO (MGI:5441705|PMID:21532570)
(PMID:21397065)		 MGI
UniProt		 PMID:21397065 PMID:21532570 MGI:5441705 NCBI chrNW_004936525:4,568,854...4,574,332 JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:20512159) BHF-UCL PMID:20512159 NCBI chrNW_004936469:40,642,240...40,727,831 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Rax retina and anterior neural fold homeobox ISO (MGI:1929394|PMID:11105055), (MGI:3575215|PMID:15789424)
(MGI:48767|PMID:17247120), (MGI:54439|PMID:640224), (MGI:61292|PMID:13970081)		 MGI PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 MGI:1929394 MGI:3575215 MGI:48767 MGI:54439 MGI:61292 NCBI chrNW_004936497:5,451,055...5,457,334 JBrowse link
G Rcn1 reticulocalbin 1 ISO (MGI:4355498|PMID:19474196) MGI PMID:19474196 MGI:4355498 NCBI chrNW_004936533:5,685,053...5,693,518 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:9512345 RGD:633787 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Rpgrip1l RPGRIP1 like ISO (MGI:3715393|PMID:17553904), (MGI:3716248|PMID:17558409) MGI PMID:17553904 PMID:17558409 MGI:3715393 MGI:3716248 NCBI chrNW_004936475:6,219,187...6,321,612 JBrowse link
G Rxra retinoid X receptor alpha ISO (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chrNW_004936669:2,735,111...2,763,060 JBrowse link
G Shh sonic hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859)
(MGI:2385969|PMID:12195432)
(MGI:2662556|PMID:12756179)
(MGI:3608482|PMID:16236765)		 MGI PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 MGI:2385969 MGI:2662556 MGI:3608482 MGI:3807419 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:2181466|PMID:12072567) MGI PMID:12072567 MGI:2181466 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Ski SKI proto-oncogene ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Slc25a25 solute carrier family 25 member 25 ISO (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chrNW_004936487:15,661,133...15,696,267 JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 ISO (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chrNW_004936866:412,719...419,381 JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:21901792) UniProt PMID:21901792 NCBI chrNW_004936471:33,224,174...33,245,076 JBrowse link
G Tbc1d20 TBC1 domain family member 20 ISO (MGI:3029604|PMID:14757819) MGI PMID:14757819 MGI:3029604 NCBI chrNW_004936485:18,034,776...18,055,741 JBrowse link
G Tbc1d32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chrNW_004936658:3,632,314...3,814,134 JBrowse link
G Tmem231 transmembrane protein 231 ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chrNW_004936475:24,215,817...24,232,689 JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chrNW_004936498:5,434,912...5,487,354 JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 ISO (MGI:3043486|PMID:14681194) MGI PMID:14681194 MGI:3043486 NCBI chrNW_004936626:1,901,686...1,946,554 JBrowse link
G Vax1 ventral anterior homeobox 1 ISO (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chrNW_004936486:6,972,972...6,978,544 JBrowse link
G Vax2 ventral anterior homeobox 2 ISO (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chrNW_004936491:15,079,446...15,110,238 JBrowse link
G Vsx2 visual system homeobox 2 ISO (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chrNW_004936488:3,487,718...3,507,802 JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chrNW_004936491:8,238,644...8,749,172 JBrowse link
G Wt1 WT1 transcription factor ISO (MGI:2176638|PMID:11889045)
(MGI:3574744|PMID:15716344)		 MGI PMID:11889045 PMID:15716344 MGI:2176638 MGI:3574744 NCBI chrNW_004936533:5,411,949...5,459,693 JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chrNW_004936478:7,146,997...7,160,369 JBrowse link
G Aqp5 aquaporin 5 ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chrNW_004936512:7,639,518...7,643,242 JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (MGI:3701027|PMID:16854970)
(MGI:3610441|PMID:16154126)		 MGI PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chrNW_004936530:71,965...143,940 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chrNW_004936630:3,443,085...3,590,430 JBrowse link
G Col8a2 collagen type VIII alpha 2 chain ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chrNW_004936474:18,587,451...18,602,446 JBrowse link
G CUNH12orf57 chromosome unknown C12orf57 homolog involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23633300 PMID:24798461 NCBI chrNW_004936709:884,741...886,617 JBrowse link
G Ephb1 EPH receptor B1 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004936529:8,006,780...8,261,923 JBrowse link
G Ephb2 EPH receptor B2 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004936474:8,109,800...8,203,106 JBrowse link
G Fat1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chrNW_004936554:2,872,729...2,996,821 JBrowse link
G Gdf11 growth differentiation factor 11 ISO (MGI:3581514|PMID:15976303) MGI PMID:15976303 MGI:3581514 NCBI chrNW_004936646:215,101...227,296 JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:52587|PMID:8387379) MGI PMID:8387379 MGI:52587 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004936602:908,034...956,634 JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:3589043|PMID:16104381) MGI PMID:16104381 MGI:3589043 NCBI chrNW_004936474:767,754...795,258 JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chrNW_004936542:4,501,081...4,602,338 JBrowse link
G Nf1 neurofibromin 1 ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chrNW_004936538:3,394,623...3,596,025 JBrowse link
G Ring1 ring finger protein 1 ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chrNW_004936476:25,643,129...25,646,928 JBrowse link
G Ski SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chrNW_004936554:6,180,883...6,871,178 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
G Yy1 YY1 transcription factor ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982)
(PMID:18654668)		 UniProt
BHF-UCL		 PMID:18654668 PMID:19228982 MGI:3838023 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004936655:682,132...928,886 JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004936473:18,550,489...18,645,470 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chrNW_004936488:16,258,247...16,306,077 JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chrNW_004936485:8,857,688...8,894,270 JBrowse link
G Notch2 notch receptor 2 ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chrNW_004936872:454,273...539,544 JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chrNW_004936498:5,434,912...5,487,354 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004936474:12,517,800...12,613,170 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004937107:203,120...207,185 JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Kera keratocan ISO (MGI:1855733|PMID:10802664) MGI PMID:10802664 MGI:1855733 NCBI chrNW_004936507:7,802,091...7,811,123 JBrowse link
G Krt12 keratin 12 involved_in ISO (MGI:85415|PMID:8977471)
(PMID:26758872)
(MGI:5752087|PMID:26758872)		 MGI
UniProt		 PMID:8977471 PMID:26758872 MGI:5752087 MGI:85415 NCBI chrNW_004936490:15,820,754...15,824,611 JBrowse link
G Limk2 LIM domain kinase 2 ISO (MGI:5646594|PMID:26234751) MGI PMID:26234751 MGI:5646594 NCBI chrNW_004936755:374,279...443,255 JBrowse link
G Pax6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:3610667|PMID:16186342) MGI PMID:16186342 MGI:3610667 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO (MGI:4949824|PMID:20574024) MGI PMID:20574024 MGI:4949824 NCBI chrNW_004936745:2,067,272...2,067,948 JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:3700411|PMID:17184764) MGI PMID:17184764 MGI:3700411 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3042765|PMID:14623956)
(MGI:3700411|PMID:17184764)		 UniProt
MGI		 PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Fgf10 fibroblast growth factor 10 ISO (MGI:3588480|PMID:15958512) MGI PMID:15958512 MGI:3588480 NCBI chrNW_004936480:18,114,231...18,195,884 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (MGI:3821812|PMID:18791178) MGI PMID:18791178 MGI:3821812 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chrNW_004936694:2,344,448...2,419,396 JBrowse link
G Pitx2 paired like homeodomain 2 ISO (MGI:1347482|PMID:10572050)
(MGI:1344731|PMID:10498698)		 MGI PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Ppp1r13l protein phosphatase 1 regulatory subunit 13 like ISO (MGI:3530389|PMID:15661756) MGI PMID:15661756 MGI:3530389 NCBI chrNW_004936706:1,835,306...1,846,821 JBrowse link
G Rara retinoic acid receptor alpha ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chrNW_004936490:15,376,217...15,420,638 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chrNW_004936525:115,614...174,641 JBrowse link
G Tulp3 TUB like protein 3 ISO (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chrNW_004936606:3,209,170...3,278,809 JBrowse link
G Wdr19 WD repeat domain 19 ISO (MGI:5314316|PMID:22228095) MGI PMID:22228095 MGI:5314316 NCBI chrNW_004936482:6,863,592...6,937,810 JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004936471:33,224,174...33,245,076 JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004936546:5,331,220...5,332,669 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chrNW_004936530:71,965...143,940 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chrNW_004936560:6,353,901...6,356,749 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004936633:2,538,209...2,543,649 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chrNW_004936602:908,034...956,634 JBrowse link
G Ift172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chrNW_004936493:5,108,437...5,145,160 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004936558:2,771,420...2,897,694 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)		 MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Pax6 paired box 6 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Sp1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936512:10,655,116...10,693,025 JBrowse link
G Sp3 Sp3 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936509:3,740,393...3,782,873 JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004936490:2,769,264...2,778,342 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004936794:478,651...486,887 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chrNW_004936574:17,643...175,762 JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)		 MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936491:2,159,654...2,214,480 JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936471:10,747,030...10,969,223 JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936504:1,535,629...1,757,386 JBrowse link
G Foxl2 forkhead box L2 ISO (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chrNW_004936540:1,136,403...1,137,984 JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936474:3,959,499...3,963,326 JBrowse link
G Rarb retinoic acid receptor beta ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chrNW_004936473:16,983,829...17,146,517 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Vax2 ventral anterior homeobox 2 ISO (MGI:2157790|PMID:11830579)
(MGI:1349226|PMID:10595508)		 MGI PMID:10595508 PMID:11830579 MGI:1349226 MGI:2157790 NCBI chrNW_004936491:15,079,446...15,110,238 JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chrNW_004936572:6,176,267...6,268,885 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Lhx1 LIM homeobox 1 ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:4413396|PMID:19653321) MGI PMID:19653321 MGI:4413396 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12692551) BHF-UCL PMID:12692551 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chrNW_004936554:2,872,729...2,996,821 JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S ISO (MGI:3613415|PMID:14618389) MGI PMID:14618389 MGI:3613415 NCBI chrNW_004936567:3,269,283...3,331,858 JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) UniProt PMID:12630957 NCBI chrNW_004936540:1,136,403...1,137,984 JBrowse link
G Myh15 myosin heavy chain 15 ISO RGD PMID:19948655 RGD:2317122 NCBI chrNW_004936645:1,656,823...2,184,210 JBrowse link
G Myom1 myomesin 1 ISO RGD PMID:12878677 RGD:633368 NCBI chrNW_004936672:1,351,053...1,481,954 JBrowse link
G Myom2 myomesin 2 ISO RGD PMID:12878677 RGD:633368 NCBI chrNW_004936615:1,153,056...1,223,239 JBrowse link
G Pitx2 paired like homeodomain 2 ISO (MGI:4881620|PMID:21035439)
(MGI:3624183|PMID:16638982)		 MGI PMID:16638982 PMID:21035439 MGI:3624183 MGI:4881620 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 ISO (MGI:5585659|PMID:25030174) UniProt PMID:25030174 MGI:5585659 NCBI chrNW_004936546:6,573,617...6,720,294 JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in ISO (PMID:23818446) UniProt PMID:23818446 NCBI chrNW_004936475:25,698,117...25,831,291 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chrNW_004936662:1,081,237...1,116,719 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (PMID:16385460) UniProt PMID:16385460 NCBI chrNW_004936706:1,702,154...1,704,366 JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chrNW_004936534:4,707,658...4,871,865 JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chrNW_004936530:71,965...143,940 JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (MGI:2181740|PMID:12117821) MGI PMID:12117821 MGI:2181740 NCBI chrNW_004936687:2,346,601...2,595,283 JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:22284829) UniProt PMID:22284829 NCBI chrNW_004936499:4,474,899...4,587,563 JBrowse link
G Cpamd8 C3 and PZP like alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) UniProt PMID:27839872 NCBI chrNW_004936596:3,756,446...3,819,840 JBrowse link
G Fgf9 fibroblast growth factor 9 ISO (MGI:5291533|PMID:21858205) CACAO PMID:21858205 MGI:5291533 NCBI chrNW_004936720:282,291...316,629 JBrowse link
G Foxe3 forkhead box E3 involved_in ISO (MGI:1352262|PMID:10652278)
(PMID:27218149)		 MGI
UniProt		 PMID:10652278 PMID:27218149 MGI:1352262 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in ISO (MGI:6368066|PMID:30802441)
(PMID:29688405), (PMID:30802441)
(MGI:5646594|PMID:26234751)		 UniProt
MGI		 PMID:26234751 PMID:29688405 PMID:30802441 MGI:5646594 MGI:6368066 NCBI chrNW_004936565:6,671,578...6,837,514 JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) UniProt PMID:19864492 NCBI chrNW_004937847:8,179...16,783 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:1339514|PMID:10391216) MGI PMID:10391216 MGI:1339514 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Hsf4 heat shock transcription factor 4 ISO (MGI:3056236|PMID:15343150) MGI PMID:15343150 MGI:3056236 NCBI chrNW_004936475:17,638,785...17,643,786 JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G LOC101962609 protein SCO2 homolog, mitochondrial involved_in ISO (PMID:23643385) UniProt PMID:23643385 NCBI chrNW_004936629:318,581...320,804 JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO (PMID:27103078), (PMID:30487245) UniProt PMID:27103078 PMID:30487245 NCBI chrNW_004936472:29,703,635...29,706,904 JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) UniProt PMID:24906020 PMID:25719200 NCBI chrNW_004936689:694,119...696,840 JBrowse link
G Meis2 Meis homeobox 2 ISO (MGI:2384485|PMID:12183364) MGI PMID:12183364 MGI:2384485 NCBI chrNW_004936471:800,510...1,006,054 JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:3604178|PMID:15994349)
(PMID:10232633)		 BHF-UCL PMID:10232633 PMID:15994349 MGI:3604178 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
G Sall2 spalt like transcription factor 2 involved_in ISO (PMID:24412933) UniProt PMID:24412933 NCBI chrNW_004936880:670,063...685,532 JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:4439252|PMID:20137777)
(PMID:20137777)		 UniProt PMID:20137777 MGI:4439252 NCBI chrNW_004936609:2,934,814...2,975,111 JBrowse link
G Sipa1l3 signal induced proliferation associated 1 like 3 ISO (MGI:5697095|PMID:26231217) UniProt PMID:26231217 MGI:5697095 NCBI chrNW_004936801:775,208...1,002,706 JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:2182264|PMID:12050133)
(PMID:18791198)		 MGI
UniProt		 PMID:12050133 PMID:18791198 MGI:2182264 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO (PMID:24891338) UniProt PMID:24891338 NCBI chrNW_004936646:638,956...649,501 JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor ISO (MGI:5775676|PMID:27018474) UniProt PMID:27018474 MGI:5775676 NCBI chrNW_004936706:908,471...929,075 JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO (MGI:4939981|PMID:21194678)
(PMID:21194678)		 UniProt PMID:21194678 MGI:4939981 NCBI chrNW_004936495:13,056,851...13,215,581 JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) UniProt PMID:18285410 NCBI chrNW_004936566:1,630,698...1,632,607 JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:15944186) UniProt PMID:15944186 NCBI chrNW_004936628:310,720...394,002 JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 ISO (MGI:5706675|PMID:26644582) UniProt PMID:26644582 MGI:5706675 NCBI chrNW_004936636:2,221,254...2,230,587 JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:16431952) UniProt PMID:16431952 NCBI chrNW_004936669:2,474,381...2,613,541 JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) UniProt PMID:16431952 NCBI chrNW_004936506:8,739,475...8,873,073 JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:8291537) BHF-UCL PMID:8291537 NCBI chrNW_004936518:4,870,686...5,041,099 JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 ISO RGD PMID:22940085 RGD:10043154 NCBI chrNW_004936648:2,172,263...2,470,494 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)		 MGI PMID:12915475 PMID:21052544 MGI:2675211 MGI:4849309 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal ISO (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chrNW_004936594:5,184,133...5,195,340 JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chrNW_004936510:2,891,136...2,949,428 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004936803:67,933...71,508 JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936542:4,272,250...4,277,231 JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936471:31,229,322...31,236,093 JBrowse link
G Olfm3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chrNW_004936748:1,773,994...1,979,727 JBrowse link
G Pax6 paired box 6 ISO (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chrNW_004936492:2,353,840...2,368,573 JBrowse link
G Prdm1 PR/SET domain 1 ISO (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chrNW_004936564:2,594,362...2,690,680 JBrowse link
G Prkci protein kinase C iota ISO (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chrNW_004936593:2,170,539...2,236,904 JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004936886:356,068...368,525 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004936794:478,651...486,887 JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chrNW_004936476:23,744,707...23,757,002 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004936529:8,885,803...9,034,217 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chrNW_004936490:17,119,189...17,178,402 JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor ISO (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chrNW_004936678:365,005...560,546 JBrowse link
G Grhl3 grainyhead like transcription factor 3 ISO (MGI:4947318|PMID:21262862) MGI PMID:21262862 MGI:4947318 NCBI chrNW_004936474:9,321,754...9,354,486 JBrowse link
G Hdac1 histone deacetylase 1 ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004936474:15,320,635...15,351,418 JBrowse link
G Hdac2 histone deacetylase 2 ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004936679:2,448,676...2,474,641 JBrowse link
G Inhba inhibin subunit beta A ISO (MGI:2682175|PMID:14551263) UniProt PMID:14551263 MGI:2682175 NCBI chrNW_004936478:16,878,725...16,884,065 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO (MGI:5608927|PMID:25224220) MGI PMID:25224220 MGI:5608927 NCBI chrNW_004936522:3,034,364...3,037,632 JBrowse link
G Kmt2c lysine methyltransferase 2C ISO (MGI:3692812|PMID:17021013) MGI PMID:17021013 MGI:3692812 NCBI chrNW_004936527:7,310,885...7,508,032 JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:5467663|PMID:23201579), (MGI:5608927|PMID:25224220) MGI PMID:23201579 PMID:25224220 MGI:5467663 MGI:5608927 NCBI chrNW_004936480:11,082,811...11,156,691 JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:3848564|PMID:19389375) UniProt PMID:19389375 MGI:3848564 NCBI chrNW_004936470:44,024,497...44,032,429 JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chrNW_004936508:12,162,553...12,281,812 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Srf serum response factor ISO (MGI:4421610|PMID:20047077) MGI PMID:20047077 MGI:4421610 NCBI chrNW_004936476:16,779,941...16,789,499 JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004936471:33,224,174...33,245,076 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) UniProt PMID:9811866 MGI:1313057 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004936546:5,331,220...5,332,669 JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936612:1,094,686...1,154,149 JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936472:23,442,946...23,617,523 JBrowse link
G Ninj1 ninjurin 1 ISO (MGI:4940188|PMID:19557008) MGI PMID:19557008 MGI:4940188 NCBI chrNW_004936487:2,486,831...2,531,943 JBrowse link
G Opn4 opsin 4 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Opn5 opsin 5 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Slc17a6 solute carrier family 17 member 6 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936654:3,039,825...3,082,788 JBrowse link
G Slc6a3 solute carrier family 6 member 3 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936815:359,775...400,690 JBrowse link
G Th tyrosine hydroxylase ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004936794:478,651...486,887 JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Pax6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc7 baculoviral IAP repeat containing 7 ISO (MGI:5766584|PMID:26218911) MGI PMID:26218911 MGI:5766584 NCBI chrNW_004936514:10,618,347...10,622,906 JBrowse link
G Casp6 caspase 6 ISO RGD PMID:15161922 RGD:2301319 NCBI chrNW_004936563:912,502...920,025 JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO RGD PMID:10620399 RGD:724665 NCBI chrNW_004936646:379,849...385,648 JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO RGD PMID:10620399 RGD:724665 NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cdon cell adhesion associated, oncogene regulated ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chrNW_004936572:6,176,267...6,268,885 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:3617146|PMID:16439475)
(MGI:2154010|PMID:11687536)
(MGI:3617146|PMID:16439475), (MGI:85598|PMID:9023351)		 RGD
MGI		 PMID:8187157 PMID:9023351 PMID:11687536 PMID:16439475 MGI:2154010 MGI:3617146 MGI:85598 RGD:1600991 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Cryab crystallin alpha B ISO (MGI:3617146|PMID:16439475) MGI PMID:16439475 MGI:3617146 NCBI chrNW_004936612:2,532,851...2,536,473 JBrowse link
G Cryba1 crystallin beta A1 ISO RGD PMID:2753045 RGD:1298814 NCBI chrNW_004936538:5,392,159...5,400,583 JBrowse link
G Cryba2 crystallin beta A2 ISO (MGI:4950336|PMID:21212184) MGI PMID:21212184 MGI:4950336 NCBI chrNW_004936569:1,410,634...1,413,735 JBrowse link
G Crygs crystallin gamma S ISO (MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261) MGI PMID:6877261 PMID:8034315 MGI:65639 MGI:69851 NCBI chrNW_004936578:3,404,552...3,410,604 JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO (MGI:5302597|PMID:21897743) MGI PMID:21897743 MGI:5302597 NCBI chrNW_004936677:342,964...360,890 JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 ISO (MGI:2682188|PMID:14645510) MGI PMID:14645510 MGI:2682188 NCBI chrNW_004936833:551,989...843,064 JBrowse link
G Fat1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chrNW_004936554:2,872,729...2,996,821 JBrowse link
G Foxe3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680)
(PMID:27218149)		 UniProt PMID:17064680 PMID:27218149 MGI:3703484 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Gata3 GATA binding protein 3 ISO (MGI:4354418|PMID:19623612) MGI PMID:19623612 MGI:4354418 NCBI chrNW_004936484:6,780,692...6,800,883 JBrowse link
G Gja8 gap junction protein alpha 8 ISO (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chrNW_004936867:374,638...378,080 JBrowse link
G Lim2 lens intrinsic membrane protein 2 ISO (MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001), (MGI:82332|PMID:8812411) MGI PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 MGI:1333159 MGI:69851 MGI:71783 MGI:82332 NCBI chrNW_004937378:46,650...48,619 JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Mip major intrinsic protein of lens fiber ISO (MGI:55175|PMID:7333462) MGI PMID:7333462 MGI:55175 NCBI chrNW_004936646:806,467...811,676 JBrowse link
G Nhs NHS actin remodeling regulator ISO (MGI:64544|PMID:8282045) MGI PMID:8282045 MGI:64544 NCBI chrNW_004936470:6,632,724...6,967,878 JBrowse link
G Pax6 paired box 6 ISO (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pds5a PDS5 cohesin associated factor A ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chrNW_004936482:7,337,475...7,466,715 JBrowse link
G Pds5b PDS5 cohesin associated factor B ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chrNW_004936472:27,258,084...27,377,278 JBrowse link
G Pitx3 paired like homeodomain 3 ISO (MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279) UniProt PMID:19007884 PMID:19334279 MGI:3831639 MGI:4353482 NCBI chrNW_004936600:3,607,883...3,619,538 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) BHF-UCL PMID:8812486 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Pygo2 pygopus family PHD finger 2 ISO (MGI:3712628|PMID:17425782) MGI PMID:17425782 MGI:3712628 NCBI chrNW_004936580:4,506,982...4,511,044 JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:1929788|PMID:11139622) UniProt PMID:11139622 MGI:1929788 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Six5 SIX homeobox 5 ISO (MGI:1855730|PMID:10802668)
(MGI:1855731|PMID:10802667)		 MGI PMID:10802667 PMID:10802668 MGI:1855730 MGI:1855731 NCBI chrNW_004936706:2,120,379...2,125,148 JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 ISO (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chrNW_004936866:412,719...419,381 JBrowse link
G Tbc1d20 TBC1 domain family member 20 ISO (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chrNW_004936485:18,034,776...18,055,741 JBrowse link
G Tbc1d32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chrNW_004936658:3,632,314...3,814,134 JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chrNW_004936524:7,656,523...7,680,043 JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chrNW_004936473:21,324,669...21,409,430 JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chrNW_004936485:2,566,698...2,599,946 JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121), (MGI:3717045|PMID:17065509) MGI PMID:15037121 PMID:17065509 MGI:2673300 MGI:3717045 NCBI chrNW_004936529:6,632,292...6,699,968 JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:5447585|PMID:23136392)
(MGI:3796810|PMID:18455718)		 MGI PMID:18455718 PMID:23136392 MGI:3796810 MGI:5447585 NCBI chrNW_004936486:10,506,680...10,606,272 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:3796810|PMID:18455718) MGI PMID:18455718 MGI:3796810 NCBI chrNW_004936477:21,591,772...21,606,289 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:4888440|PMID:21118511) MGI PMID:21118511 MGI:4888440 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
G Tmod1 tropomodulin 1 ISO (MGI:5475090|PMID:23144950) CACAO PMID:23144950 MGI:5475090 NCBI chrNW_004936524:6,347,089...6,403,996 JBrowse link
G Vim vimentin ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chrNW_004936520:10,051,692...10,059,324 JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzr1 fizzy and cell division cycle 20 related 1 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chrNW_004936588:2,000,872...2,007,569 JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:24142921 RGD:9587771 NCBI chrNW_004936567:1,782,056...1,860,861 JBrowse link
G Nf2 neurofibromin 2 ISO (MGI:4457460|PMID:20181838) UniProt PMID:20181838 MGI:4457460 NCBI chrNW_004936657:3,536,212...3,622,999 JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chrNW_004936483:13,912,904...14,291,881 JBrowse link
G Pitx3 paired like homeodomain 3 ISO (MGI:3831639|PMID:19007884) UniProt PMID:19007884 MGI:3831639 NCBI chrNW_004936600:3,607,883...3,619,538 JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:2181466|PMID:12072567) UniProt PMID:12072567 MGI:2181466 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Skil SKI like proto-oncogene ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chrNW_004936593:2,109,414...2,132,871 JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO RGD PMID:16043861 RGD:2315033 NCBI chrNW_004936535:9,177,305...9,242,743 JBrowse link
G Smad3 SMAD family member 3 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO (MGI:4943339|PMID:21436445)
(PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chrNW_004936524:6,268,640...6,323,059 JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chrNW_004936631:30,109...101,748 JBrowse link
G Atf4 activating transcription factor 4 ISO (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chrNW_004936492:2,114,478...2,115,969 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:3775669|PMID:18056999)
(MGI:3655912|PMID:16799046)		 MGI PMID:16799046 PMID:18056999 MGI:3655912 MGI:3775669 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Epha2 EPH receptor A2 ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chrNW_004936474:3,648,395...3,673,856 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188)
(PMID:11850194)		 BHF-UCL PMID:10080188 PMID:11850194 MGI:1332720 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Tbc1d20 TBC1 domain family member 20 ISO (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chrNW_004936485:18,034,776...18,055,741 JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO (MGI:1316914|PMID:9851982) MGI PMID:9851982 MGI:1316914 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chrNW_004936481:18,607,212...18,679,828 JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:3692850|PMID:17066077) MGI PMID:17066077 MGI:3692850 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chrNW_004936566:1,630,698...1,632,607 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:1347707|PMID:10571739) MGI PMID:10571739 MGI:1347707 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member ISO (MGI:4358852|PMID:19365570) MGI PMID:19365570 MGI:4358852 NCBI chrNW_004936537:5,548,422...5,662,219 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chrNW_004936560:6,353,901...6,356,749 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:3655912|PMID:16799046)
(MGI:82388|PMID:8812430)		 MGI PMID:8812430 PMID:16799046 MGI:3655912 MGI:82388 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Ctnnb1 catenin beta 1 ISO (MGI:3603687|PMID:16102745) MGI PMID:16102745 MGI:3603687 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:1933072|PMID:11290300) MGI PMID:11290300 MGI:1933072 NCBI chrNW_004936477:21,591,772...21,606,289 JBrowse link
G Lctl lactase like ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chrNW_004936471:26,676,058...26,690,455 JBrowse link
G Meis1 Meis homeobox 1 ISO (MGI:3028436|PMID:14713950) MGI PMID:14713950 MGI:3028436 NCBI chrNW_004936491:11,079,574...11,216,451 JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chrNW_004936542:4,501,081...4,602,338 JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chrNW_004936834:86,195...110,686 JBrowse link
G Pitx3 paired like homeodomain 3 ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chrNW_004936600:3,607,883...3,619,538 JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Ski SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO (MGI:4943339|PMID:21436445)
(PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chrNW_004936524:6,268,640...6,323,059 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) MGI PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004936535:2,705,184...2,711,785 JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO (MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865) UniProt PMID:10652278 PMID:10890982 PMID:16199865 MGI:1352262 MGI:1861492 MGI:3603877 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Spred1 sprouty related EVH1 domain containing 1 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004936471:1,952,532...2,039,561 JBrowse link
G Spred2 sprouty related EVH1 domain containing 2 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004936491:10,053,546...10,170,950 JBrowse link
G Spred3 sprouty related EVH1 domain containing 3 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004936801:1,150,897...1,160,016 JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004936662:2,241,928...2,245,616 JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004936511:1,452,421...1,458,031 JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator ISO (MGI:1336407|PMID:10321489) MGI PMID:10321489 MGI:1336407 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO (PMID:25622036) UniProt PMID:25622036 NCBI chrNW_004936474:224,836...230,682 JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chrNW_004936566:3,577,412...3,587,182 JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in ISO (MGI:5288596|PMID:21441919)
(PMID:21441919)		 MGI PMID:21441919 MGI:5288596 NCBI chrNW_004936521:10,038,345...10,039,345 JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004936507:6,525,302...6,631,003 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004936602:2,744,757...3,011,051 JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004936809:396,883...466,372 JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004936567:944,825...1,039,920 JBrowse link
G Bsg basigin (Ok blood group) ISO (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chrNW_004936588:181,688...189,795 JBrowse link
G Casp2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chrNW_004936527:739,325...754,259 JBrowse link
G Gpm6a glycoprotein M6A ISO (MGI:3811956|PMID:18776950) UniProt PMID:18776950 MGI:3811956 NCBI chrNW_004936516:6,339,058...6,647,412 JBrowse link
G LOC101956249 optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chrNW_004936862:488,591...516,819 JBrowse link
G Psen1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chrNW_004936488:2,464,623...2,528,807 JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 ISO (MGI:3694624|PMID:17089410) MGI PMID:17089410 MGI:3694624 NCBI chrNW_004936538:3,269,317...3,382,298 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:2631392 RGD:9585660 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Slc17a6 solute carrier family 17 member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004936654:3,039,825...3,082,788 JBrowse link
G Slc17a7 solute carrier family 17 member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004936664:3,307,562...3,318,184 JBrowse link
G Slc17a8 solute carrier family 17 member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004936492:13,436,136...13,486,173 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chrNW_004936527:6,643,182...6,675,708 JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chrNW_004936628:310,720...394,002 JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Pax2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) BHF-UCL PMID:11850194 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004936509:2,248,181...2,250,991 JBrowse link
G Dlx2 distal-less homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004936509:2,262,873...2,265,391 JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISO (MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)
(PMID:22527307)		 UniProt PMID:10652278 PMID:16199865 PMID:22527307 MGI:1352262 MGI:3603877 NCBI chrNW_004936474:28,211,144...28,212,963 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004937107:203,120...207,185 JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:29501879) UniProt PMID:29501879 NCBI chrNW_004936662:1,886,176...1,928,998 JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:3604916|PMID:16162653) UniProt PMID:16162653 MGI:3604916 NCBI chrNW_004936469:32,240,730...32,372,413 JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 ISO RGD PMID:12917395 RGD:2301324 NCBI chrNW_004936563:912,502...920,025 JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B ISO (MGI:2662810|PMID:12717433) MGI PMID:12717433 MGI:2662810 NCBI chrNW_004936604:3,023,781...3,110,104 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (MGI:3826935|PMID:18832390)
(MGI:3821812|PMID:18791178)		 CACAO
MGI		 PMID:18791178 PMID:18832390 MGI:3821812 MGI:3826935 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Klf4 Kruppel like factor 4 ISO (MGI:3697243|PMID:17060454) MGI PMID:17060454 MGI:3697243 NCBI chrNW_004936559:5,105,456...5,109,970 JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:11120573 RGD:2303744 NCBI chrNW_004936784:515,608...539,915 JBrowse link
G Vegfa vascular endothelial growth factor A ISO (MGI:1339868|PMID:10229225) MGI PMID:10229225 MGI:1339868 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2 antagonist/killer 1 ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chrNW_004936476:25,347,608...25,354,772 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chrNW_004936472:23,442,946...23,617,523 JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO (MGI:3614611|PMID:16466397) MGI PMID:16466397 MGI:3614611 NCBI chrNW_004936500:3,845,320...3,852,000 JBrowse link
G Kdr kinase insert domain receptor ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chrNW_004936482:17,537,697...17,581,320 JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936491:2,159,654...2,214,480 JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936471:10,747,030...10,969,223 JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004936474:3,959,499...3,963,326 JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chrNW_004936473:7,027,543...7,054,079 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475), (MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194) MGI PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Dscam DS cell adhesion molecule ISO (MGI:3768917|PMID:18216855) MGI PMID:18216855 MGI:3768917 NCBI chrNW_004936500:2,686,847...3,339,110 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chrNW_004936472:152,202...165,134 JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO (MGI:1309707|PMID:9784491) MGI PMID:9784491 MGI:1309707 NCBI chrNW_004936587:4,573,166...4,578,480 JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 ISO (MGI:5314555|PMID:22323600) UniProt PMID:22323600 MGI:5314555 NCBI chrNW_004936471:4,320,235...4,330,251 JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004936520:4,978,896...4,980,648 JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:4837018|PMID:20890044) UniProt PMID:20890044 MGI:4837018 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP Elav-like family member 4 ISO (MGI:5523751|PMID:23932931) MGI PMID:23932931 MGI:5523751 NCBI chrNW_004936517:8,010,133...8,010,721 JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004936540:5,530,081...5,582,765 JBrowse link
G Cntf ciliary neurotrophic factor ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004936581:3,710,171...3,715,753 JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chrNW_004936662:1,886,176...1,928,998 JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) ISO (MGI:3603700|PMID:15579149) MGI PMID:15579149 MGI:3603700 NCBI chrNW_004936543:856,678...862,080 JBrowse link
G Actb actin beta ISO RGD PMID:22916200 RGD:9587758 NCBI chrNW_004936765:667,107...670,627 JBrowse link
G Ahi1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO (MGI:3699582|PMID:10982921) MGI PMID:10982921 MGI:3699582 NCBI chrNW_004936531:6,899,580...7,019,016 JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO (MGI:1277631|PMID:9699561) MGI PMID:9699561 MGI:1277631 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (MGI:2654391|PMID:12654290) MGI PMID:12654290 MGI:2654391 NCBI chrNW_004936687:2,346,601...2,595,283 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chrNW_004936726:1,543,263...1,711,422 JBrowse link
G C3 complement C3 ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chrNW_004936588:3,985,732...4,023,221 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936721:1,078,570...1,106,153 JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chrNW_004936544:3,858,344...3,881,985 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
G Cfd complement factor D ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chrNW_004936588:350,925...352,732 JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) BHF-UCL PMID:15300250 NCBI chrNW_004936496:12,381,225...12,505,121 JBrowse link
G Clcn2 chloride voltage-gated channel 2 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936578:5,525,461...5,539,351 JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein ISO (MGI:4849309|PMID:21052544)
(MGI:3695117|PMID:15565184)		 MGI PMID:15565184 PMID:21052544 MGI:3695117 MGI:4849309 NCBI chrNW_004936615:993,092...999,976 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858), (MGI:5608935|PMID:25147295) MGI PMID:22447858 PMID:25147295 MGI:5315300 MGI:5608935 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chrNW_004936888:468,334...471,254 JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chrNW_004936552:1,787,687...1,926,516 JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chrNW_004936518:4,291,391...4,310,752 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936737:1,518,855...1,554,926 JBrowse link
G Grm6 glutamate metabotropic receptor 6 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936739:1,726,382...1,742,937 JBrowse link
G Grn granulin precursor ISO (MGI:6101836|PMID:28728022) MGI PMID:28728022 MGI:6101836 NCBI chrNW_004936541:793,548...800,271 JBrowse link
G Hpca hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chrNW_004936474:15,786,171...15,794,830 JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936636:1,407,666...1,430,683 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:3831471|PMID:18940586) MGI PMID:18940586 MGI:3831471 NCBI chrNW_004936686:1,459,582...1,556,478 JBrowse link
G Il4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chrNW_004936647:2,510,457...2,518,576 JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004936479:15,523,342...15,540,229 JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004936529:748,777...753,582 JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO (MGI:3580691|PMID:15345036) MGI PMID:15345036 MGI:3580691 NCBI chrNW_004936594:1,760,924...1,771,022 JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936670:359,343...511,126 JBrowse link
G Lamb2 laminin subunit beta 2 ISO (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chrNW_004936529:826,178...841,304 JBrowse link
G Lamc3 laminin subunit gamma 3 ISO (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chrNW_004936487:17,910,673...17,958,641 JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Lhx2 LIM homeobox 2 ISO (MGI:3836385|PMID:19146846) MGI PMID:19146846 MGI:3836385 NCBI chrNW_004936487:12,395,817...12,413,860 JBrowse link
G Lif LIF interleukin 6 family cytokine ISO RGD PMID:16643897 RGD:2326157 NCBI chrNW_004936904:410,043...413,256 JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936815:281,664...345,915 JBrowse link
G Max MYC associated factor X ISO RGD PMID:14603520 RGD:2316820 NCBI chrNW_004936495:8,728,941...8,755,742 JBrowse link
G Mdm1 Mdm1 nuclear protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936545:6,261,887...6,294,487 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936783:607,425...704,879 JBrowse link
G Mfrp membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936542:4,272,250...4,277,231 JBrowse link
G Musk muscle associated receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chrNW_004936559:2,387,019...2,486,685 JBrowse link
G Myh10 myosin heavy chain 10 ISO (MGI:1099556|PMID:9356462), (MGI:1933038|PMID:11283949) MGI PMID:9356462 PMID:11283949 MGI:1099556 MGI:1933038 NCBI chrNW_004936595:1,697,283...1,832,571 JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chrNW_004936542:4,501,081...4,602,338 JBrowse link
G Neurod4 neuronal differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chrNW_004936891:471,576...482,195 JBrowse link
G Nos3 nitric oxide synthase 3 ISO RGD PMID:16639026 RGD:7771562 NCBI chrNW_004936527:6,427,147...6,445,770 JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:3624573|PMID:16702404)
(MGI:2151063|PMID:11997145)		 MGI PMID:11997145 PMID:16702404 MGI:2151063 MGI:3624573 NCBI chrNW_004936564:4,432,556...4,453,056 JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:3624051|PMID:12407160)
(MGI:4849309|PMID:21052544)		 MGI PMID:12407160 PMID:21052544 MGI:3624051 MGI:4849309 NCBI chrNW_004936471:31,229,322...31,236,093 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:5619875|PMID:25542970) MGI PMID:25542970 MGI:5619875 NCBI chrNW_004936680:267,850...621,467 JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chrNW_004936711:1,027,531...1,113,796 JBrowse link
G Pax4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chrNW_004936479:14,807,503...14,812,575 JBrowse link
G Pax6 paired box 6 ISO (MGI:3836385|PMID:19146846) RGD
MGI		 PMID:19012751 PMID:19146846 MGI:3836385 RGD:2311636 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pde6a phosphodiesterase 6A ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936504:5,018,171...5,088,333 JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chrNW_004936492:2,353,840...2,368,573 JBrowse link
G Pfdn5 prefoldin subunit 5 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936512:10,579,657...10,583,477 JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO (MGI:3621691|PMID:9630743)
(MGI:80981|PMID:8637595)		 MGI PMID:8637595 PMID:9630743 MGI:3621691 MGI:80981 NCBI chrNW_004936535:2,705,184...2,711,785 JBrowse link
G Prph2 peripherin 2 ISO (MGI:3610839|PMID:15964665), (MGI:5905515|PMID:28053051)
(MGI:4849309|PMID:21052544)
(MGI:5905515|PMID:28053051)		 MGI PMID:15964665 PMID:21052544 PMID:28053051 MGI:3610839 MGI:4849309 MGI:5905515 NCBI chrNW_004936476:17,159,756...17,174,226 JBrowse link
G Ptn pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Rarb retinoic acid receptor beta ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chrNW_004936473:16,983,829...17,146,517 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4849309|PMID:21052544), (MGI:52860|PMID:8486383) UniProt PMID:8486383 PMID:21052544 MGI:4849309 MGI:52860 NCBI chrNW_004936557:1,852,996...1,873,070 JBrowse link
G Ret ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chrNW_004936617:2,927,185...2,980,594 JBrowse link
G Rho rhodopsin ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Rnpep arginyl aminopeptidase ISO RGD PMID:15500823 RGD:2325937 NCBI chrNW_004936567:2,504,544...2,524,977 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Rpl24 ribosomal protein L24 ISO (MGI:1097191|PMID:9331275), (MGI:1332363|PMID:10049578) MGI PMID:9331275 PMID:10049578 MGI:1097191 MGI:1332363 NCBI chrNW_004936630:1,753,485...1,758,155 JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chrNW_004936498:815,401...848,749 JBrowse link
G Serpinf1 serpin family F member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chrNW_004936538:7,885,816...7,898,308 JBrowse link
G Ski SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Slc1a1 solute carrier family 1 member 1 ISO (MGI:6492417|PMID:28703795) MGI PMID:28703795 MGI:6492417 NCBI chrNW_004936503:613,250...690,555 JBrowse link
G Slc4a5 solute carrier family 4 member 5 ISO (MGI:5292606|PMID:21705333) MGI PMID:21705333 MGI:5292606 NCBI chrNW_004936556:475,856...577,160 JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Tbc1d32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chrNW_004936658:3,632,314...3,814,134 JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 ISO (MGI:4819740|PMID:20711468) MGI PMID:20711468 MGI:4819740 NCBI chrNW_004936599:2,070,211...2,079,169 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004936549:7,401,532...7,465,264 JBrowse link
G Tgif1 TGFB induced factor homeobox 1 ISO (MGI:3826282|PMID:18973577) MGI PMID:18973577 MGI:3826282 NCBI chrNW_004936672:1,128,104...1,135,844 JBrowse link
G Tgif2 TGFB induced factor homeobox 2 ISO (MGI:3826300|PMID:18926818) MGI PMID:18926818 MGI:3826300 NCBI chrNW_004936561:4,450,093...4,465,358 JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 involved_in ISO (PMID:24791901) MGI PMID:24791901 NCBI chrNW_004936488:4,723,314...4,983,926 JBrowse link
G Tub TUB bipartite transcription factor ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936528:9,829,889...9,912,645 JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936476:23,744,707...23,757,002 JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936511:5,524,425...5,581,156 JBrowse link
G Ush2a usherin ISO RGD PMID:12160733 RGD:634438 NCBI chrNW_004936628:2,123,917...2,859,958 JBrowse link
G Vax2 ventral anterior homeobox 2 ISO (MGI:1349226|PMID:10595508) MGI PMID:10595508 MGI:1349226 NCBI chrNW_004936491:15,079,446...15,110,238 JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004936620:4,069,956...4,145,212 JBrowse link
G Znf513 zinc finger protein 513 involved_in ISO (PMID:20797688) UniProt PMID:20797688 NCBI chrNW_004936493:5,203,926...5,207,031 JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Arl6 ADP ribosylation factor like GTPase 6 ISO (MGI:4442100|PMID:20333246)
(MGI:5306530|PMID:22139371)		 MGI PMID:20333246 PMID:22139371 MGI:4442100 MGI:5306530 NCBI chrNW_004936666:3,077,006...3,102,469 JBrowse link
G Calb1 calbindin 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chrNW_004936544:3,858,344...3,881,985 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Fat3 FAT atypical cadherin 3 ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chrNW_004936674:1,770,884...2,104,909 JBrowse link
G Fjx1 four-jointed box kinase 1 ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chrNW_004936533:2,585,907...2,589,113 JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chrNW_004936769:1,061,907...1,081,350 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Irx6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chrNW_004936475:7,665,100...7,672,132 JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:10741426)
(MGI:3772525|PMID:18094249)		 UniProtKB
UniProt		 PMID:10741426 PMID:18094249 MGI:3772525 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Megf11 multiple EGF like domains 11 ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chrNW_004936471:26,119,146...26,437,057 JBrowse link
G Prom1 prominin 1 ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004936520:4,978,896...4,980,648 JBrowse link
G Ptprm protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chrNW_004936670:890,316...1,692,033 JBrowse link
G Rdh13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chrNW_004936886:356,068...368,525 JBrowse link
G Rs1 retinoschisin 1 ISO (MGI:2179152|PMID:11983912)
(MGI:3055638|PMID:15326152)		 MGI PMID:11983912 PMID:15326152 MGI:2179152 MGI:3055638 NCBI chrNW_004936844:284,938...314,524 JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004936655:682,132...928,886 JBrowse link
G Slc1a1 solute carrier family 1 member 1 ISO (MGI:4414613|PMID:19766171), (MGI:6155272|PMID:29677370) MGI PMID:19766171 PMID:29677370 MGI:4414613 MGI:6155272 NCBI chrNW_004936503:613,250...690,555 JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004936476:9,855,992...9,884,788 JBrowse link
G Tspan12 tetraspanin 12 ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chrNW_004936605:4,265,475...4,338,518 JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chrNW_004936496:9,085,894...9,087,623 JBrowse link
G Crb1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475), (MGI:3696487|PMID:17234588), (MGI:5608935|PMID:25147295) MGI PMID:12915475 PMID:17234588 PMID:25147295 MGI:2675211 MGI:3696487 MGI:5608935 NCBI chrNW_004936567:6,347,661...6,559,731 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chrNW_004936599:1,746,309...1,814,471 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 ISO (MGI:4453938|PMID:20144606) MGI PMID:20144606 MGI:4453938 NCBI chrNW_004936531:4,331,354...4,494,110 JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004936474:21,790,807...21,803,336 JBrowse link
G Nectin3 nectin cell adhesion molecule 3 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chrNW_004936834:86,195...110,686 JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO (MGI:3701413|PMID:17301087) MGI PMID:17301087 MGI:3701413 NCBI chrNW_004936520:4,978,896...4,980,648 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (MGI:3624065|PMID:16651659) MGI PMID:16651659 MGI:3624065 NCBI chrNW_004936566:1,630,698...1,632,607 JBrowse link
G Vsx2 visual system homeobox 2 ISO (MGI:3701027|PMID:16854970), (MGI:79586|PMID:8630490) MGI PMID:8630490 PMID:16854970 MGI:3701027 MGI:79586 NCBI chrNW_004936488:3,487,718...3,507,802 JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004936473:27,816,366...27,822,555 JBrowse link
G Acvrl1 activin A receptor like type 1 ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004936512:9,364,551...9,379,131 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004936726:1,543,263...1,711,422 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:4950335|PMID:21212189) MGI PMID:21212189 MGI:4950335 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO (MGI:3829820|PMID:19005183) MGI PMID:19005183 MGI:3829820 NCBI chrNW_004936663:345,021...355,188 JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chrNW_004936492:2,353,840...2,368,573 JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO (MGI:1931346|PMID:11239463) UniProt PMID:11239463 MGI:1931346 NCBI chrNW_004936482:16,804,129...16,853,539 JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO (MGI:1931346|PMID:11239463)
(MGI:2680741|PMID:14624252)		 UniProt PMID:11239463 PMID:14624252 MGI:1931346 MGI:2680741 NCBI chrNW_004936504:4,762,251...4,799,789 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chrNW_004936581:642,322...644,286 JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 ISO (MGI:5441394|PMID:22535667) MGI PMID:22535667 MGI:5441394 NCBI chrNW_004936595:1,531,694...1,545,206 JBrowse link
G Clic4 chloride intracellular channel 4 ISO (MGI:3837628|PMID:19197003) MGI PMID:19197003 MGI:3837628 NCBI chrNW_004936474:9,664,872...9,711,036 JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO (MGI:4366716|PMID:19837032)
(PMID:12172548), (PMID:15024691)		 MGI
BHF-UCL		 PMID:12172548 PMID:15024691 PMID:19837032 MGI:4366716 NCBI chrNW_004936498:14,657,641...14,666,853 JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (MGI:4366716|PMID:19837032)
(MGI:2178168|PMID:11956231)
(MGI:3790936|PMID:18263894)		 MGI
RGD		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 MGI:2178168 MGI:3790936 MGI:4366716 RGD:40902996 NCBI chrNW_004936599:1,746,309...1,814,471 JBrowse link
G Ndp norrin cystine knot growth factor NDP ISO (MGI:4366716|PMID:19837032) MGI PMID:19837032 MGI:4366716 NCBI chrNW_004936502:10,080,169...10,105,155 JBrowse link
G Nrp1 neuropilin 1 ISO (MGI:5562961|PMID:24401374) BHF-UCL PMID:24401374 MGI:5562961 NCBI chrNW_004936574:1,694,433...1,834,720 JBrowse link
G Rhoj ras homolog family member J ISO (MGI:5441394|PMID:22535667) MGI PMID:22535667 MGI:5441394 NCBI chrNW_004936495:7,094,522...7,174,371 JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004936473:18,550,489...18,645,470 JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chrNW_004936496:9,085,894...9,087,623 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Casz1 castor zinc finger 1 ISO (MGI:5630049|PMID:24467707) MGI PMID:24467707 MGI:5630049 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936686:1,459,582...1,556,478 JBrowse link
G Irx5 iroquois homeobox 5 ISO (MGI:3776945|PMID:18322081) MGI PMID:18322081 MGI:3776945 NCBI chrNW_004936475:7,354,273...7,358,328 JBrowse link
G Irx6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chrNW_004936475:7,665,100...7,672,132 JBrowse link
G Vsx1 visual system homeobox 1 ISO (MGI:3039332|PMID:15043821)
(MGI:3776945|PMID:18322081)
(MGI:3029641|PMID:14745032)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 MGI:3029641 MGI:3039332 MGI:3776945 NCBI chrNW_004936620:710,917...718,205 JBrowse link
G Vsx2 visual system homeobox 2 ISO (MGI:79586|PMID:8630490) MGI PMID:8630490 MGI:79586 NCBI chrNW_004936488:3,487,718...3,507,802 JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chrNW_004936470:24,315,371...24,476,063 JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) BHF-UCL PMID:20818663 NCBI chrNW_004936472:2,416,043...2,543,561 JBrowse link
G Fzd4 frizzled class receptor 4 ISO (MGI:3621833|PMID:15035989) BHF-UCL PMID:15035989 MGI:3621833 NCBI chrNW_004936498:14,657,641...14,666,853 JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936670:359,343...511,126 JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO (MGI:4431324|PMID:20032512) UniProt PMID:20032512 MGI:4431324 NCBI chrNW_004936663:345,021...355,188 JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (MGI:6092915|PMID:27031698)
(PMID:15024691), (PMID:15346351)		 CACAO
BHF-UCL		 PMID:15024691 PMID:15346351 PMID:27031698 MGI:6092915 NCBI chrNW_004936599:1,746,309...1,814,471 JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator ISO (MGI:2677551|PMID:14517994) MGI PMID:14517994 MGI:2677551 NCBI chrNW_004936664:2,968,103...2,973,652 JBrowse link
G Faslg Fas ligand ISO (MGI:2677551|PMID:14517994) MGI PMID:14517994 MGI:2677551 NCBI chrNW_004936481:14,789,547...14,795,780 JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chrNW_004936473:18,550,489...18,645,470 JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Cabp4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936744:1,499,431...1,537,784 JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chrNW_004936487:11,793,078...11,813,803 JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936604:5,241,877...5,243,910 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522 PMID:21052544 MGI:3714271 MGI:4849309 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936480:17,051,902...17,416,335 JBrowse link
G Pde6c phosphodiesterase 6C ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936601:1,343,538...1,393,605 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Thrb thyroid hormone receptor beta ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chrNW_004936473:15,766,214...15,986,389 JBrowse link
G Thy1 Thy-1 cell surface antigen ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chrNW_004936542:4,323,905...4,329,940 JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
G Med1 mediator complex subunit 1 ISO (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chrNW_004936490:14,625,201...14,663,184 JBrowse link
G Mfsd2a major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004936474:21,790,807...21,803,336 JBrowse link
G Pax2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
G Rarb retinoic acid receptor beta ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chrNW_004936473:16,983,829...17,146,517 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Tbc1d32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chrNW_004936658:3,632,314...3,814,134 JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chrNW_004936491:17,152,759...17,342,648 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chrNW_004936471:31,962,500...32,019,516 JBrowse link
G Ccdc66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chrNW_004936473:7,027,543...7,054,079 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chrNW_004936490:17,305,033...17,312,167 JBrowse link
G Nrl neural retina leucine zipper ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chrNW_004936722:448,006...454,064 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chrNW_004936680:267,850...621,467 JBrowse link
G Rorb RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chrNW_004936503:10,294,530...10,473,070 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chrNW_004936483:723,784...856,839 JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
G Sox8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936501:128,386...132,648 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chrNW_004936623:4,478,421...4,503,207 JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004936592:1,706,979...1,806,345 JBrowse link
trabecular meshwork development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MG