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ONTOLOGY REPORT - ANNOTATIONS

Term:visual system development
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Accession:GO:0150063 term browser browse the term
Definition:The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways.
Synonyms:related_synonym: optic pathway development;   visual pathway development

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visual system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RY12 purinergic receptor P2Y12 ISO (MGI:5806217|PMID:26948129) ARUK-UCL PMID:26948129 MGI:5806217 NCBI chr 3:148,364,151...148,412,231 JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXN4 forkhead box N4 ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025 		JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245 		JBrowse link
G NEUROD1 neuronal differentiation 1 ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NEUROD4 neuronal differentiation 4 ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chr12:33,719,986...33,730,012 JBrowse link
G PTF1A pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr10:23,356,165...23,359,579 JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 ISO (MGI:3525751|PMID:15572692) MGI PMID:15572692 MGI:3525751 NCBI chr2B:90,561,708...90,663,072
Ensembl chr2B:208,702,092...208,797,499 		JBrowse link
G AHR aryl hydrocarbon receptor ISO (MGI:1889403|PMID:10973493) DFLAT PMID:10973493 MGI:1889403 NCBI chr 7:17,949,254...17,998,737 JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:3055706|PMID:15366004)
(MGI:3612223|PMID:16368932)		 MGI PMID:15366004 PMID:16368932 MGI:3055706 MGI:3612223 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ARHGAP35 Rho GTPase activating protein 35 ISO (MGI:1926242|PMID:11044403) MGI PMID:11044403 MGI:1926242 NCBI chr19:43,850,692...43,994,487
Ensembl chr19:52,435,379...52,521,104 		JBrowse link
G B9D1 B9 domain containing 1 ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr17:31,735,065...31,779,454
Ensembl chr17:36,914,969...36,941,391 		JBrowse link
G BMP4 bone morphogenetic protein 4 ISO (MGI:1095762|PMID:9268572)
(MGI:3043486|PMID:14681194)		 MGI PMID:9268572 PMID:14681194 MGI:1095762 MGI:3043486 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B ISO (MGI:3574003|PMID:15673568) MGI PMID:15673568 MGI:3574003 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chr12:2,166,672...2,817,827
Ensembl chr12:2,114,140...2,744,826 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A ISO (MGI:5696765|PMID:24947469) MGI PMID:24947469 MGI:5696765 NCBI chr 4:9,904,237...10,047,440
Ensembl chr 4:15,204,326...15,349,281 		JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C ISO (MGI:3839493|PMID:19276117) MGI PMID:19276117 MGI:3839493 NCBI chr11:2,908,537...2,911,134 JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 ISO (MGI:3611161|PMID:16207732) MGI PMID:16207732 MGI:3611161 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186 		JBrowse link
G CRYAB crystallin alpha B ISO (MGI:2682441|PMID:12546709) MGI PMID:12546709 MGI:2682441 NCBI chr11:106,795,406...106,800,019
Ensembl chr11:110,639,442...110,644,272 		JBrowse link
G CRYBA1 crystallin beta A1 ISO (MGI:1350675|PMID:10585769) MGI PMID:10585769 MGI:1350675 NCBI chr17:27,522,647...27,530,767
Ensembl chr17:28,032,809...28,040,525 		JBrowse link
G CRYBA4 crystallin beta A4 involved_in ISO (PMID:16960806) UniProt PMID:16960806 NCBI chr22:7,683,356...7,692,532
Ensembl chr22:25,405,980...25,414,643 		JBrowse link
G CRYGC crystallin gamma C ISO (MGI:2156903|PMID:11773036) MGI PMID:11773036 MGI:2156903 NCBI chr2B:95,359,514...95,361,201
Ensembl chr2B:213,482,830...213,484,517 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO RGD PMID:15967433 RGD:2306661 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636 		JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr2A:56,017,678...56,076,059
Ensembl chr2A:57,155,000...57,212,500 		JBrowse link
G FAT1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357 		JBrowse link
G FBN1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr15:27,358,780...27,593,539
Ensembl chr15:45,682,450...45,918,111 		JBrowse link
G FBN2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 5:123,673,209...123,953,741
Ensembl chr 5:129,435,248...129,715,711 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 ISO (MGI:3039989|PMID:15105374) MGI PMID:15105374 MGI:3039989 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170 		JBrowse link
G FOXC1 forkhead box C1 ISO (MGI:1355577|PMID:10767326)
(MGI:1340945|PMID:10395790)		 MGI PMID:10395790 PMID:10767326 MGI:1340945 MGI:1355577 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXC2 forkhead box C2 ISO (MGI:1355577|PMID:10767326) MGI PMID:10767326 MGI:1355577 NCBI chr16:67,237,476...67,239,545 JBrowse link
G FOXE3 forkhead box E3 ISO (MGI:1932584|PMID:11309658) MGI PMID:11309658 MGI:1932584 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G FOXP2 forkhead box P2 ISO (MGI:3723373|PMID:17619227) MGI PMID:17619227 MGI:3723373 NCBI chr 7:106,040,118...106,648,741
Ensembl chr 7:119,077,332...119,343,893 		JBrowse link
G GAS1 growth arrest specific 1 ISO (MGI:3713422|PMID:17525797) MGI PMID:17525797 MGI:3713422 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GJA8 gap junction protein alpha 8 ISO (MGI:2156142|PMID:11782410)
(MGI:3047041|PMID:15253273)		 MGI PMID:11782410 PMID:15253273 MGI:2156142 MGI:3047041 NCBI chr 1:123,352,801...123,355,625
Ensembl chr 1:112,174,365...112,177,893 		JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GPD2 glycerol-3-phosphate dehydrogenase 2 ISO (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chr2B:43,694,744...43,845,764
Ensembl chr2B:160,938,514...161,117,320 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 ISO (MGI:4943100|PMID:21377456) MGI PMID:21377456 MGI:4943100 NCBI chr 8:98,129,147...98,308,120
Ensembl chr 8:100,308,575...100,471,830 		JBrowse link
G HES5 hes family bHLH transcription factor 5 ISO (MGI:3703278|PMID:17331197) UniProt PMID:17331197 MGI:3703278 NCBI chr 1:1,261,260...1,263,128 JBrowse link
G HESX1 HESX homeobox 1 ISO (MGI:3821905|PMID:19093031) MGI PMID:19093031 MGI:3821905 NCBI chr 3:57,131,419...57,161,205
Ensembl chr 3:58,341,965...58,370,347 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chr 9:40,898,593...40,911,159
Ensembl chr 9:83,324,238...83,336,756 		JBrowse link
G HSF4 heat shock transcription factor 4 ISO (MGI:3721138|PMID:16595169)
(MGI:3056833|PMID:15483628)		 MGI PMID:15483628 PMID:16595169 MGI:3056833 MGI:3721138 NCBI chr16:47,509,458...47,516,060
Ensembl chr16:66,897,868...66,904,179 		JBrowse link
G IHH Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G JAG1 jagged canonical Notch ligand 1 ISO (MGI:1336582|PMID:10196361) MGI PMID:10196361 MGI:1336582 NCBI chr20:10,582,234...10,618,507
Ensembl chr20:10,582,094...10,618,383 		JBrowse link
G LIM2 lens intrinsic membrane protein 2 ISO (MGI:1197732|PMID:9238094) MGI PMID:9238094 MGI:1197732 NCBI chr19:48,315,028...48,323,144
Ensembl chr19:57,200,260...57,208,354 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta ISO (MGI:1353150|PMID:10660670)
(MGI:4461349|PMID:20568247)		 MGI PMID:10660670 PMID:20568247 MGI:1353150 MGI:4461349 NCBI chr 9:97,730,850...97,820,554
Ensembl chr 9:126,240,722...126,322,420 		JBrowse link
G LOC100976159 pericentrin ISO (MGI:5696764|PMID:25220058) MGI PMID:25220058 MGI:5696764 NCBI chr21:32,665,361...32,741,592
Ensembl chr21:45,914,665...46,042,990 		JBrowse link
G LOC100978249 beta-crystallin B2 ISO (MGI:2137502|PMID:11381063) RGD
MGI		 PMID:8706714 PMID:11381063 MGI:2137502 RGD:1298813 NCBI chr22:6,153,824...6,186,786
Ensembl chr22:23,819,784...23,827,265 		JBrowse link
G LOC100983857 transmembrane protein 231 ISO (MGI:5300833|PMID:22179047) MGI PMID:22179047 MGI:5300833 NCBI chr16:56,107,360...56,126,172
Ensembl chr16:75,455,303...75,473,874 		JBrowse link
G MAB21L1 mab-21 like 1 ISO (MGI:2652201|PMID:12642482) MGI PMID:12642482 MGI:2652201 NCBI chr13:16,694,273...16,699,115
Ensembl chr13:35,126,721...35,127,800 		JBrowse link
G MAB21L2 mab-21 like 2 ISO (MGI:3510098|PMID:15385160) MGI PMID:15385160 MGI:3510098 NCBI chr 4:142,913,376...142,916,001
Ensembl chr 4:154,563,939...154,565,018 		JBrowse link
G MAP3K1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:2674169|PMID:12941696) MGI PMID:12941696 MGI:2674169 NCBI chr 5:57,116,405...57,197,017
Ensembl chr 5:58,745,579...58,826,959 		JBrowse link
G MED1 mediator complex subunit 1 ISO (MGI:2682174|PMID:14500757) MGI PMID:14500757 MGI:2682174 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118 		JBrowse link
G MITF melanocyte inducing transcription factor ISO (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chr 3:69,674,064...69,902,078
Ensembl chr 3:71,037,665...71,265,445 		JBrowse link
G MTERF4 mitochondrial transcription termination factor 4 ISO (MGI:5287350|PMID:21531335) MGI PMID:21531335 MGI:5287350 NCBI chr2B:128,330,967...128,362,014
Ensembl chr2B:247,128,252...247,158,239 		JBrowse link
G MTNR1A melatonin receptor 1A ISO RGD PMID:12890503 RGD:9588674 NCBI chr 4:178,693,869...178,720,351
Ensembl chr 4:190,897,192...190,921,677 		JBrowse link
G MTNR1B melatonin receptor 1B ISO RGD PMID:12890503 RGD:9588674 NCBI chr11:87,996,805...88,009,865
Ensembl chr11:91,491,822...91,504,652 		JBrowse link
G MYF5 myogenic factor 5 ISO (MGI:3849775|PMID:19531352) MGI PMID:19531352 MGI:3849775 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G NEUROD1 neuronal differentiation 1 ISO (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NEUROD4 neuronal differentiation 4 ISO (MGI:2158684|PMID:11861467) MGI PMID:11861467 MGI:2158684 NCBI chr12:33,719,986...33,730,012 JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:3582135|PMID:16000615)
(MGI:3054148|PMID:15371513)		 MGI PMID:15371513 PMID:16000615 MGI:3054148 MGI:3582135 NCBI chr 6:105,965,478...105,988,213
Ensembl chr 6:109,831,223...109,851,436 		JBrowse link
G PAX2 paired box 2 ISO (MGI:2662558|PMID:12756174) MGI PMID:12756174 MGI:2662558 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
G PAX6 paired box 6 ISO (MGI:1927276|PMID:11069887)
(MGI:2384485|PMID:12183364)
(MGI:1928799|PMID:11062307)
(MGI:2662558|PMID:12756174)
(MGI:2181466|PMID:12072567)
(MGI:2654287|PMID:12648492), (MGI:3584303|PMID:16080917)		 MGI PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 PMID:12756174 PMID:16080917 MGI:1927276 MGI:1928799 MGI:2181466 MGI:2384485 MGI:2654287 MGI:2662558 MGI:3584303 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:9618168) BHF-UCL PMID:9618168 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G PKNOX1 PBX/knotted 1 homeobox 1 ISO (MGI:3653971|PMID:16847320) MGI PMID:16847320 MGI:3653971 NCBI chr21:29,282,883...29,341,998
Ensembl chr21:42,622,065...42,647,329 		JBrowse link
G PRSS56 serine protease 56 involved_in ISO (MGI:5441705|PMID:21532570)
(PMID:21397065)		 MGI
UniProt		 PMID:21397065 PMID:21532570 MGI:5441705 NCBI chr2B:119,751,950...119,757,308
Ensembl chr2B:238,670,931...238,675,839 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:20512159) BHF-UCL PMID:20512159 NCBI chr2B:24,692,363...24,810,685
Ensembl chr2B:139,125,375...139,242,721 		JBrowse link
G RARG retinoic acid receptor gamma ISO (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RAX retina and anterior neural fold homeobox ISO (MGI:1929394|PMID:11105055), (MGI:3575215|PMID:15789424)
(MGI:48767|PMID:17247120), (MGI:54439|PMID:640224), (MGI:61292|PMID:13970081)		 MGI PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 MGI:1929394 MGI:3575215 MGI:48767 MGI:54439 MGI:61292 NCBI chr18:52,664,243...52,669,177
Ensembl chr18:55,990,984...55,995,469 		JBrowse link
G RCN1 reticulocalbin 1 ISO (MGI:4355498|PMID:19474196) MGI PMID:19474196 MGI:4355498 NCBI chr11:32,054,917...32,069,524 JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:9512345 RGD:633787 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G RPGRIP1L RPGRIP1 like ISO (MGI:3715393|PMID:17553904), (MGI:3716248|PMID:17558409) MGI PMID:17553904 PMID:17558409 MGI:3715393 MGI:3716248 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G RXRA retinoid X receptor alpha ISO (MGI:1096258|PMID:9376317) MGI PMID:9376317 MGI:1096258 NCBI chr 9:105,424,046...105,539,241
Ensembl chr 9:134,082,865...134,144,704 		JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:3608482|PMID:16236765)
(MGI:3807419|PMID:18582859)
(MGI:2662556|PMID:12756179)
(MGI:2385969|PMID:12195432)		 MGI PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 MGI:2385969 MGI:2662556 MGI:3608482 MGI:3807419 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SIX3 SIX homeobox 3 ISO (MGI:2181466|PMID:12072567) MGI PMID:12072567 MGI:2181466 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SKI SKI proto-oncogene ISO (MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:2176418 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SLC25A25 solute carrier family 25 member 25 ISO (MGI:4947900|PMID:21296886) MGI PMID:21296886 MGI:4947900 NCBI chr 9:99,188,906...99,229,771
Ensembl chr 9:127,859,948...127,900,922 		JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 ISO (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chr13:66,990,025...67,003,900
Ensembl chr13:86,161,905...86,164,430 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:21901792) UniProt PMID:21901792 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876 		JBrowse link
G TBC1D20 TBC1 domain family member 20 ISO (MGI:3029604|PMID:14757819) MGI PMID:14757819 MGI:3029604 NCBI chr20:644,646...670,860
Ensembl chr20:414,066...431,032 		JBrowse link
G TBC1D32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 ISO (MGI:3043486|PMID:14681194) MGI PMID:14681194 MGI:3043486 NCBI chr18:4,883,688...4,950,963
Ensembl chr18:7,164,091...7,229,271 		JBrowse link
G VAX1 ventral anterior homeobox 1 ISO (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr10:113,710,934...113,720,671 JBrowse link
G VAX2 ventral anterior homeobox 2 ISO (MGI:3578573|PMID:15905411) MGI PMID:15905411 MGI:3578573 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463 		JBrowse link
G VSX2 visual system homeobox 2 ISO (MGI:3512656|PMID:15576400) MGI PMID:15576400 MGI:3512656 NCBI chr14:54,797,734...54,821,081 JBrowse link
G WDPCP WD repeat containing planar cell polarity effector ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr2A:63,180,279...63,658,804
Ensembl chr2A:64,325,379...64,785,256 		JBrowse link
G WT1 WT1 transcription factor ISO (MGI:3574744|PMID:15716344)
(MGI:2176638|PMID:11889045)		 MGI PMID:11889045 PMID:15716344 MGI:2176638 MGI:3574744 NCBI chr11:32,349,807...32,398,494
Ensembl chr11:32,238,720...32,287,249 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr 7:31,524,933...31,538,602
Ensembl chr 7:31,644,331...31,658,141 		JBrowse link
G AQP5 aquaporin 5 ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr12:38,789,505...38,793,305
Ensembl chr12:39,684,008...39,687,127 		JBrowse link
G BMP4 bone morphogenetic protein 4 ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP7 bone morphogenetic protein 7 ISO (MGI:3610441|PMID:16154126)
(MGI:3701027|PMID:16854970)		 MGI PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G C12H12orf57 chromosome 12 C12orf57 homolog involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr12:7,073,251...7,075,408
Ensembl chr12:6,978,576...6,990,580 		JBrowse link
G COL8A1 collagen type VIII alpha 1 chain ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr 3:96,732,445...96,892,726
Ensembl chr 3:103,521,159...103,573,617 		JBrowse link
G COL8A2 collagen type VIII alpha 2 chain ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr 1:35,361,336...35,391,173
Ensembl chr 1:36,537,869...36,540,541 		JBrowse link
G EPHB1 EPH receptor B1 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 3:131,841,459...132,309,082
Ensembl chr 3:139,313,387...139,776,802 		JBrowse link
G EPHB2 EPH receptor B2 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 1:21,895,961...22,107,649
Ensembl chr 1:22,912,570...23,047,118 		JBrowse link
G FAT1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357 		JBrowse link
G GDF11 growth differentiation factor 11 ISO (MGI:3581514|PMID:15976303) MGI PMID:15976303 MGI:3581514 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252 		JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:52587|PMID:8387379) MGI PMID:8387379 MGI:52587 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885 		JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G MFN2 mitofusin 2 ISO (MGI:3589043|PMID:16104381) MGI PMID:16104381 MGI:3589043 NCBI chr 1:10,729,933...10,764,865
Ensembl chr 1:11,945,880...11,981,077 		JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090 		JBrowse link
G NF1 neurofibromin 1 ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295 		JBrowse link
G RING1 ring finger protein 1 ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417 		JBrowse link
G SKI SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G TENM3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chr 4:173,644,674...174,993,218
Ensembl chr 4:186,738,624...187,214,394 		JBrowse link
G VEGFA vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
G YY1 YY1 transcription factor ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr14:80,859,491...80,903,651 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982)
(PMID:18654668)		 UniProt
BHF-UCL		 PMID:18654668 PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G JAG1 jagged canonical Notch ligand 1 ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr20:10,582,234...10,618,507
Ensembl chr20:10,582,094...10,618,383 		JBrowse link
G NOTCH2 notch receptor 2 ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840 		JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chr 1:27,634,440...27,768,139
Ensembl chr 1:28,741,081...28,794,870 		JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G KERA keratocan ISO (MGI:1855733|PMID:10802664) MGI PMID:10802664 MGI:1855733 NCBI chr12:88,583,919...88,591,418
Ensembl chr12:91,899,381...91,911,615 		JBrowse link
G KRT12 keratin 12 involved_in ISO (MGI:5752087|PMID:26758872)
(PMID:26758872)
(MGI:85415|PMID:8977471)		 UniProt
MGI		 PMID:8977471 PMID:26758872 MGI:5752087 MGI:85415 NCBI chr17:16,414,985...16,423,417
Ensembl chr17:16,642,038...16,648,124 		JBrowse link
G LIMK2 LIM domain kinase 2 ISO (MGI:5646594|PMID:26234751) MGI PMID:26234751 MGI:5646594 NCBI chr22:12,235,611...12,304,013
Ensembl chr22:30,071,574...30,139,821 		JBrowse link
G PAX6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:3610667|PMID:16186342) MGI PMID:16186342 MGI:3610667 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TWIST2 twist family bHLH transcription factor 2 ISO (MGI:4949824|PMID:20574024) MGI PMID:20574024 MGI:4949824 NCBI chr2B:126,080,684...126,143,677 JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:3700411|PMID:17184764) MGI PMID:17184764 MGI:3700411 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3700411|PMID:17184764)
(MGI:3042765|PMID:14623956)		 MGI
UniProt		 PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G CDK20 cyclin dependent kinase 20 ISO (MGI:5912686|PMID:28817564) MGI PMID:28817564 MGI:5912686 NCBI chr 9:59,114,640...59,146,438
Ensembl chr 9:87,186,151...87,216,537 		JBrowse link
G FGF10 fibroblast growth factor 10 ISO (MGI:3588480|PMID:15958512) MGI PMID:15958512 MGI:3588480 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FZD5 frizzled class receptor 5 ISO (MGI:3821812|PMID:18791178) MGI PMID:18791178 MGI:3821812 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774 		JBrowse link
G IFT140 intraflagellar transport 140 ISO (MGI:5505384|PMID:23469164) MGI PMID:23469164 MGI:5505384 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G PITX2 paired like homeodomain 2 ISO (MGI:1347482|PMID:10572050)
(MGI:1344731|PMID:10498698)		 MGI PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G PPP1R13L protein phosphatase 1 regulatory subunit 13 like ISO (MGI:3530389|PMID:15661756) MGI PMID:15661756 MGI:3530389 NCBI chr19:42,328,814...42,355,088 JBrowse link
G RARA retinoic acid receptor alpha ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr17:16,932,485...16,980,958 JBrowse link
G RARG retinoic acid receptor gamma ISO (MGI:69060|PMID:7607067) MGI PMID:7607067 MGI:69060 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RDH10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785 		JBrowse link
G TULP3 TUB like protein 3 ISO (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G WDR19 WD repeat domain 19 ISO (MGI:5314316|PMID:22228095) MGI PMID:22228095 MGI:5314316 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chr 7:19,761,041...19,765,665 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G FOXF2 forkhead box F2 ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G FZD5 frizzled class receptor 5 ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G IFT172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IHH Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G KDM2B lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246 		JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:3823171|PMID:18985738)
(MGI:4413396|PMID:19653321)		 MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G PAX6 paired box 6 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G SP1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr12:35,338,492...35,374,462
Ensembl chr12:36,127,681...36,158,356 		JBrowse link
G SP3 Sp3 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr2B:61,185,975...61,243,155
Ensembl chr2B:178,639,677...178,692,848 		JBrowse link
G TBX2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr17:55,501,932...55,511,537
Ensembl chr17:60,622,098...60,630,189 		JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TH tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr10:31,449,202...31,659,534
Ensembl chr10:32,046,491...32,253,550 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)		 MGI PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr2A:56,017,678...56,076,059
Ensembl chr2A:57,155,000...57,212,500 		JBrowse link
G FBN1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr15:27,358,780...27,593,539
Ensembl chr15:45,682,450...45,918,111 		JBrowse link
G FBN2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 5:123,673,209...123,953,741
Ensembl chr 5:129,435,248...129,715,711 		JBrowse link
G FOXL2 forkhead box L2 ISO (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chr 3:135,968,040...135,980,063 JBrowse link
G MFAP2 microfibril associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 1:15,918,209...15,924,388 JBrowse link
G RARB retinoic acid receptor beta ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297 		JBrowse link
G RARG retinoic acid receptor gamma ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G VAX2 ventral anterior homeobox 2 ISO (MGI:2157790|PMID:11830579)
(MGI:1349226|PMID:10595508)		 MGI PMID:10595508 PMID:11830579 MGI:1349226 MGI:2157790 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G LHX1 LIM homeobox 1 ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:4413396|PMID:19653321) MGI PMID:19653321 MGI:4413396 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (PMID:12692551) BHF-UCL PMID:12692551 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763 		JBrowse link
G RBP4 retinol binding protein 4 ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAT1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1S calcium voltage-gated channel subunit alpha1 S ISO (MGI:3613415|PMID:14618389) MGI PMID:14618389 MGI:3613415 NCBI chr 1:176,639,189...176,712,171
Ensembl chr 1:180,941,836...181,014,823 		JBrowse link
G FOXL2 forkhead box L2 involved_in ISO (PMID:12630957) UniProt PMID:12630957 NCBI chr 3:135,968,040...135,980,063 JBrowse link
G MYH15 myosin heavy chain 15 ISO RGD PMID:19948655 RGD:2317122 NCBI chr 3:105,498,196...105,635,979
Ensembl chr 3:112,432,417...112,586,559 		JBrowse link
G MYOM1 myomesin 1 ISO RGD PMID:12878677 RGD:633368 NCBI chr18:11,057,733...11,215,998
Ensembl chr18:13,368,052...13,523,834 		JBrowse link
G MYOM2 myomesin 2 ISO RGD PMID:12878677 RGD:633368 NCBI chr 8:5,189,688...5,319,538
Ensembl chr 8:1,924,661...2,057,695 		JBrowse link
G PITX2 paired like homeodomain 2 ISO (MGI:3624183|PMID:16638982)
(MGI:4881620|PMID:21035439)		 MGI PMID:16638982 PMID:21035439 MGI:3624183 MGI:4881620 NCBI chr 4:103,112,624...103,137,356 JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB5 ATP binding cassette subfamily B member 5 ISO (MGI:5585659|PMID:25030174) UniProt PMID:25030174 MGI:5585659 NCBI chr 7:21,302,954...21,432,569
Ensembl chr 7:20,620,875...20,746,634 		JBrowse link
G ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in ISO (PMID:23818446) UniProt PMID:23818446 NCBI chr16:57,857,112...58,011,181
Ensembl chr16:77,291,148...77,445,664 		JBrowse link
G ATF6 activating transcription factor 6 involved_in ISO (PMID:26029869) UniProt PMID:26029869 NCBI chr 1:137,178,629...137,382,256
Ensembl chr 1:140,977,750...141,176,725 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 ISO (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chr 4:114,024,949...114,072,000
Ensembl chr 4:125,161,804...125,208,350 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (PMID:16385460) UniProt PMID:16385460 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BMP4 bone morphogenetic protein 4 NOT ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP6 bone morphogenetic protein 6 ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr 6:7,564,164...7,720,341
Ensembl chr 6:7,848,249...8,000,649 		JBrowse link
G BMP7 bone morphogenetic protein 7 ISO (MGI:3610441|PMID:16154126) UniProt PMID:16154126 MGI:3610441 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B ISO (MGI:2181740|PMID:12117821) MGI PMID:12117821 MGI:2181740 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G CHRDL1 chordin like 1 involved_in ISO (PMID:22284829) UniProt PMID:22284829 NCBI chr  X:99,781,730...99,915,778
Ensembl chr  X:110,251,525...110,375,289 		JBrowse link
G CPAMD8 C3 and PZP like alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) UniProt PMID:27839872 NCBI chr19:16,379,956...16,513,841 JBrowse link
G CRYGB crystallin gamma B ISO (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr2B:95,373,199...95,378,131
Ensembl chr2B:213,497,286...213,500,951 		JBrowse link
G CRYGC crystallin gamma C ISO (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr2B:95,359,514...95,361,201
Ensembl chr2B:213,482,830...213,484,517 		JBrowse link
G CST3 cystatin C ISO RGD PMID:11431459 RGD:2306512 NCBI chr20:23,583,043...23,587,399
Ensembl chr20:23,935,942...23,940,425 		JBrowse link
G FGF9 fibroblast growth factor 9 ISO (MGI:5291533|PMID:21858205) CACAO PMID:21858205 MGI:5291533 NCBI chr13:2,967,713...3,000,554
Ensembl chr13:21,273,333...21,307,198 		JBrowse link
G FOXC1 forkhead box C1 involved_in ISO (MGI:1261705|PMID:9635428)
(PMID:9792859)
(MGI:1335260|PMID:10072431)		 MGI PMID:9635428 PMID:9792859 PMID:10072431 MGI:1261705 MGI:1335260 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXE3 forkhead box E3 involved_in ISO (MGI:1352262|PMID:10652278)
(PMID:27218149)		 MGI
UniProt		 PMID:10652278 PMID:27218149 MGI:1352262 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 involved_in ISO (MGI:6368066|PMID:30802441)
(PMID:29688405), (PMID:30802441)
(MGI:5646594|PMID:26234751)		 UniProt
MGI		 PMID:26234751 PMID:29688405 PMID:30802441 MGI:5646594 MGI:6368066 NCBI chr13:19,900,324...20,103,303
Ensembl chr13:38,490,750...38,687,048 		JBrowse link
G GDF3 growth differentiation factor 3 involved_in ISO (PMID:19864492) UniProt PMID:19864492 NCBI chr12:7,813,288...7,819,418
Ensembl chr12:7,972,907...7,979,815 		JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:1339514|PMID:10391216) MGI PMID:10391216 MGI:1339514 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HSF4 heat shock transcription factor 4 ISO (MGI:3056236|PMID:15343150) MGI PMID:15343150 MGI:3056236 NCBI chr16:47,509,458...47,516,060
Ensembl chr16:66,897,868...66,904,179 		JBrowse link
G IFT88 intraflagellar transport 88 ISO (MGI:5314314|PMID:22228099) MGI PMID:22228099 MGI:5314314 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G LOC100976808 protein SCO2 homolog, mitochondrial involved_in ISO (PMID:23643385) UniProt PMID:23643385 NCBI chr22:30,769,899...30,772,008
Ensembl chr22:49,879,867...49,880,667 		JBrowse link
G LOC100978046 gamma-crystallin D ISO (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr2B:95,352,149...95,356,237
Ensembl chr2B:213,476,336...213,479,279 		JBrowse link
G LOC100979384 gamma-crystallin A ISO (MGI:3042503|PMID:15037589) MGI PMID:15037589 MGI:3042503 NCBI chr2B:95,392,084...95,395,480
Ensembl chr2B:213,515,174...213,518,022 		JBrowse link
G MAB21L1 mab-21 like 1 involved_in ISO (PMID:27103078), (PMID:30487245) UniProt PMID:27103078 PMID:30487245 NCBI chr13:16,694,273...16,699,115
Ensembl chr13:35,126,721...35,127,800 		JBrowse link
G MAB21L2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) UniProt PMID:24906020 PMID:25719200 NCBI chr 4:142,913,376...142,916,001
Ensembl chr 4:154,563,939...154,565,018 		JBrowse link
G MEIS2 Meis homeobox 2 ISO (MGI:2384485|PMID:12183364) MGI PMID:12183364 MGI:2384485 NCBI chr15:15,814,739...16,025,512
Ensembl chr15:34,072,665...34,282,477 		JBrowse link
G RBP4 retinol binding protein 4 involved_in ISO (MGI:3604178|PMID:15994349)
(PMID:10232633)		 BHF-UCL PMID:10232633 PMID:15994349 MGI:3604178 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
G SALL2 spalt like transcription factor 2 involved_in ISO (PMID:24412933) UniProt PMID:24412933 NCBI chr14:2,338,806...2,354,970
Ensembl chr14:20,416,071...20,431,000 		JBrowse link
G SH3PXD2B SH3 and PX domains 2B involved_in ISO (MGI:4439252|PMID:20137777)
(PMID:20137777)		 UniProt PMID:20137777 MGI:4439252 NCBI chr 5:167,678,633...167,807,960
Ensembl chr 5:174,591,759...174,719,957 		JBrowse link
G SIPA1L3 signal induced proliferation associated 1 like 3 ISO (MGI:5697095|PMID:26231217) UniProt PMID:26231217 MGI:5697095 NCBI chr19:35,006,279...35,317,501
Ensembl chr19:43,749,134...43,869,953 		JBrowse link
G SIX3 SIX homeobox 3 involved_in ISO (MGI:2182264|PMID:12050133)
(PMID:18791198)		 MGI
UniProt		 PMID:12050133 PMID:18791198 MGI:2182264 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SLC39A5 solute carrier family 39 member 5 involved_in ISO (PMID:24891338) UniProt PMID:24891338 NCBI chr12:32,677,330...32,685,316
Ensembl chr12:32,929,033...32,936,158 		JBrowse link
G SMG9 SMG9 nonsense mediated mRNA decay factor ISO (MGI:5775676|PMID:27018474) UniProt PMID:27018474 MGI:5775676 NCBI chr19:40,679,952...40,704,104
Ensembl chr19:49,285,796...49,309,980 		JBrowse link
G SMOC1 SPARC related modular calcium binding 1 involved_in ISO (MGI:4939981|PMID:21194678)
(PMID:21194678)		 UniProt PMID:21194678 MGI:4939981 NCBI chr14:50,472,951...50,622,267
Ensembl chr14:69,345,185...69,493,887 		JBrowse link
G SOX2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) UniProt PMID:18285410 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (PMID:15944186) UniProt PMID:15944186 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G ZDHHC16 zinc finger DHHC-type palmitoyltransferase 16 ISO (MGI:5706675|PMID:26644582) UniProt PMID:26644582 MGI:5706675 NCBI chr10:94,068,816...94,079,732
Ensembl chr10:97,562,379...97,573,305 		JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain involved_in ISO (PMID:16431952) UniProt PMID:16431952 NCBI chr 9:105,746,388...105,956,280
Ensembl chr 9:134,342,955...134,544,651 		JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) UniProt PMID:16431952 NCBI chr2B:76,339,756...76,487,133
Ensembl chr2B:194,259,316...194,407,237 		JBrowse link
G GAS1 growth arrest specific 1 ISO (MGI:2138055|PMID:11456441) MGI PMID:11456441 MGI:2138055 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in ISO (PMID:8291537) BHF-UCL PMID:8291537 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184 		JBrowse link
G STAU2 staufen double-stranded RNA binding protein 2 ISO RGD PMID:22940085 RGD:10043154 NCBI chr 8:69,958,735...70,283,591
Ensembl chr 8:71,606,583...71,929,167 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475)
(MGI:4849309|PMID:21052544)		 MGI PMID:12915475 PMID:21052544 MGI:2675211 MGI:4849309 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G FSCN2 fascin actin-bundling protein 2, retinal ISO (MGI:3610644|PMID:16043865) MGI PMID:16043865 MGI:3610644 NCBI chr17:75,974,971...75,993,275
Ensembl chr17:81,687,051...81,694,823 		JBrowse link
G GABRR2 gamma-aminobutyric acid type A receptor subunit rho2 NOT ISO (MGI:2179933|PMID:12019334) MGI PMID:12019334 MGI:2179933 NCBI chr 6:87,123,527...87,185,547
Ensembl chr 6:90,401,811...90,459,468 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185 		JBrowse link
G MFRP membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr11:114,179,998...114,187,716
Ensembl chr11:118,107,317...118,115,050 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr15:50,759,707...50,767,703
Ensembl chr15:69,525,351...69,533,034 		JBrowse link
G OLFM3 olfactomedin 3 ISO RGD PMID:12019210 RGD:633402 NCBI chr 1:104,451,488...104,651,208
Ensembl chr 1:103,168,819...103,364,306 		JBrowse link
G PAX6 paired box 6 ISO (MGI:2654287|PMID:12648492) MGI PMID:12648492 MGI:2654287 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883 		JBrowse link
G PRDM1 PR/SET domain 1 ISO (MGI:4454584|PMID:20463215) MGI PMID:20463215 MGI:4454584 NCBI chr 6:103,899,410...103,923,389
Ensembl chr 6:107,773,229...107,796,815 		JBrowse link
G PRKCI protein kinase C iota ISO (MGI:3607414|PMID:16267237) MGI PMID:16267237 MGI:3607414 NCBI chr 3:167,237,093...167,320,522
Ensembl chr 3:175,426,774...175,510,072 		JBrowse link
G RDH13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267 		JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:2654998|PMID:12651948) MGI PMID:12651948 MGI:2654998 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064 		JBrowse link
G TH tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433 		JBrowse link
G TULP1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160 		JBrowse link
G VEGFA vascular endothelial growth factor A ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP2R3A protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chr 3:133,017,166...133,202,163
Ensembl chr 3:140,485,925...140,666,592 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO (MGI:3045481|PMID:15207851) MGI PMID:15207851 MGI:3045481 NCBI chr17:14,928,689...15,003,644
Ensembl chr17:15,152,358...15,227,067 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTX2 orthodenticle homeobox 2 ISO (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor ISO (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 ISO (MGI:4947318|PMID:21262862) MGI PMID:21262862 MGI:4947318 NCBI chr 1:23,519,911...23,558,105
Ensembl chr 1:24,502,294...24,547,152 		JBrowse link
G HDAC1 histone deacetylase 1 ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410 		JBrowse link
G HDAC2 histone deacetylase 2 ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chr 6:111,731,139...111,761,826
Ensembl chr 6:115,802,367...115,833,004 		JBrowse link
G INHBA inhibin subunit beta A ISO (MGI:2682175|PMID:14551263) UniProt PMID:14551263 MGI:2682175 NCBI chr 7:42,538,591...42,556,578
Ensembl chr 7:42,580,730...42,595,097 		JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit ISO (MGI:5608927|PMID:25224220) MGI PMID:25224220 MGI:5608927 NCBI chr 1:58,042,794...58,045,536 JBrowse link
G KMT2C lysine methyltransferase 2C ISO (MGI:3692812|PMID:17021013) MGI PMID:17021013 MGI:3692812 NCBI chr 7:143,714,716...144,016,188
Ensembl chr 7:155,862,610...156,081,043 		JBrowse link
G MAP3K1 mitogen-activated protein kinase kinase kinase 1 ISO (MGI:5467663|PMID:23201579), (MGI:5608927|PMID:25224220) MGI PMID:23201579 PMID:25224220 MGI:5467663 MGI:5608927 NCBI chr 5:57,116,405...57,197,017
Ensembl chr 5:58,745,579...58,826,959 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 ISO (MGI:3848564|PMID:19389375) UniProt PMID:19389375 MGI:3848564 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G SOS1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO (MGI:85697|PMID:9030684) MGI PMID:9030684 MGI:85697 NCBI chr2A:39,019,046...39,162,248
Ensembl chr2A:39,773,760...39,911,961 		JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G SRF serum response factor ISO (MGI:4421610|PMID:20047077) MGI PMID:20047077 MGI:4421610 NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876 		JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) UniProt PMID:9811866 MGI:1313057 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chr 7:19,761,041...19,765,665 JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX1 LIM homeobox 1 ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DRD2 dopamine receptor D2 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935 		JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr13:9,584,850...9,779,542 JBrowse link
G NINJ1 ninjurin 1 ISO (MGI:4940188|PMID:19557008) MGI PMID:19557008 MGI:4940188 NCBI chr 9:64,245,086...64,258,614
Ensembl chr 9:92,311,502...92,324,030 		JBrowse link
G OPN4 opsin 4 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr10:83,082,351...83,095,161 JBrowse link
G OPN5 opsin 5 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119 		JBrowse link
G SLC17A6 solute carrier family 17 member 6 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr11:22,350,537...22,392,009
Ensembl chr11:22,258,011...22,301,944 		JBrowse link
G SLC6A3 solute carrier family 6 member 3 ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr 5:1,687,079...1,739,729
Ensembl chr 5:1,437,567...1,488,829 		JBrowse link
G TH tyrosine hydroxylase ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G PAX6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G VHL von Hippel-Lindau tumor suppressor ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIRC7 baculoviral IAP repeat containing 7 ISO (MGI:5766584|PMID:26218911) MGI PMID:26218911 MGI:5766584 NCBI chr20:59,618,530...59,623,612
Ensembl chr20:61,157,302...61,161,932 		JBrowse link
G CASP6 caspase 6 ISO RGD PMID:15161922 RGD:2301319 NCBI chr 4:102,186,215...102,201,992
Ensembl chr 4:112,753,988...112,768,836 		JBrowse link
G CDK2 cyclin dependent kinase 2 ISO RGD PMID:10620399 RGD:724665 NCBI chr12:32,940,225...32,946,236
Ensembl chr12:33,189,934...33,195,945 		JBrowse link
G CDK4 cyclin dependent kinase 4 ISO RGD PMID:10620399 RGD:724665 NCBI chr12:31,174,446...31,178,597
Ensembl chr12:31,434,594...31,438,876 		JBrowse link
G CDON cell adhesion associated, oncogene regulated ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091 		JBrowse link
G CRYAB crystallin alpha B ISO (MGI:3617146|PMID:16439475) MGI PMID:16439475 MGI:3617146 NCBI chr11:106,795,406...106,800,019
Ensembl chr11:110,639,442...110,644,272 		JBrowse link
G CRYBA1 crystallin beta A1 ISO RGD PMID:2753045 RGD:1298814 NCBI chr17:27,522,647...27,530,767
Ensembl chr17:28,032,809...28,040,525 		JBrowse link
G CRYBA2 crystallin beta A2 ISO (MGI:4950336|PMID:21212184) MGI PMID:21212184 MGI:4950336 NCBI chr2B:106,248,236...106,252,081
Ensembl chr2B:224,841,620...224,844,836 		JBrowse link
G CRYGB crystallin gamma B ISO (MGI:3776178|PMID:18172107)
(MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090)		 RGD
MGI		 PMID:2338125 PMID:8626090 PMID:12426373 PMID:18172107 MGI:3691890 MGI:3776178 MGI:81294 RGD:2303725 NCBI chr2B:95,373,199...95,378,131
Ensembl chr2B:213,497,286...213,500,951 		JBrowse link
G CRYGC crystallin gamma C ISO RGD PMID:2338125 RGD:2303725 NCBI chr2B:95,359,514...95,361,201
Ensembl chr2B:213,482,830...213,484,517 		JBrowse link
G CRYGS crystallin gamma S ISO (MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261) MGI PMID:6877261 PMID:8034315 MGI:65639 MGI:69851 NCBI chr 3:183,569,637...183,576,722
Ensembl chr 3:192,037,607...192,043,486 		JBrowse link
G CTNS cystinosin, lysosomal cystine transporter ISO (MGI:5302597|PMID:21897743) MGI PMID:21897743 MGI:5302597 NCBI chr17:3,686,903...3,711,857
Ensembl chr17:3,683,575...3,708,253 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 ISO (MGI:2682188|PMID:14645510) MGI PMID:14645510 MGI:2682188 NCBI chr 3:194,386,263...194,648,015
Ensembl chr 3:204,323,724...204,584,987 		JBrowse link
G FAT1 FAT atypical cadherin 1 ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357 		JBrowse link
G FOXE3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680)
(PMID:27218149)		 UniProt PMID:17064680 PMID:27218149 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293 		JBrowse link
G GATA3 GATA binding protein 3 ISO (MGI:4354418|PMID:19623612) MGI PMID:19623612 MGI:4354418 NCBI chr10:8,075,951...8,105,573
Ensembl chr10:8,064,207...8,086,272 		JBrowse link
G GJA1 gap junction protein alpha 1 ISO (MGI:1267300|PMID:9620080) MGI PMID:9620080 MGI:1267300 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G GJA8 gap junction protein alpha 8 ISO (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chr 1:123,352,801...123,355,625
Ensembl chr 1:112,174,365...112,177,893 		JBrowse link
G GJE1 gap junction protein epsilon 1 ISO (MGI:3795311|PMID:18385072) MGI PMID:18385072 MGI:3795311 NCBI chr 6:139,901,021...139,902,784
Ensembl chr 6:143,974,781...143,976,543 		JBrowse link
G LIM2 lens intrinsic membrane protein 2 ISO (MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001), (MGI:82332|PMID:8812411) MGI PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 MGI:1333159 MGI:69851 MGI:71783 MGI:82332 NCBI chr19:48,315,028...48,323,144
Ensembl chr19:57,200,260...57,208,354 		JBrowse link
G LOC100978046 gamma-crystallin D ISO (MGI:1354024|PMID:10704279)
(MGI:3762268|PMID:17652744)		 RGD
MGI		 PMID:2338125 PMID:10704279 PMID:17652744 MGI:1354024 MGI:3762268 RGD:2303725 NCBI chr2B:95,352,149...95,356,237
Ensembl chr2B:213,476,336...213,479,279 		JBrowse link
G LOC100979384 gamma-crystallin A ISO (MGI:1333159|PMID:6510713), (MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001)
(MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261)		 RGD
MGI		 PMID:2338125 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 MGI:1333159 MGI:65639 MGI:69851 MGI:71783 RGD:2303725 NCBI chr2B:95,392,084...95,395,480
Ensembl chr2B:213,515,174...213,518,022 		JBrowse link
G MAF MAF bZIP transcription factor ISO (MGI:1340085|PMID:10383433)
(MGI:3760711|PMID:12835653)
(MGI:1350584|PMID:10603348)		 MGI PMID:10383433 PMID:10603348 PMID:12835653 MGI:1340085 MGI:1350584 MGI:3760711 NCBI chr16:60,188,494...60,194,871 JBrowse link
G MED1 mediator complex subunit 1 ISO (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118 		JBrowse link
G MIP major intrinsic protein of lens fiber ISO (MGI:55175|PMID:7333462) MGI PMID:7333462 MGI:55175 NCBI chr12:32,459,965...32,465,465
Ensembl chr12:32,713,470...32,718,026 		JBrowse link
G NHS NHS actin remodeling regulator ISO (MGI:64544|PMID:8282045) MGI PMID:8282045 MGI:64544 NCBI chr  X:9,988,584...10,359,110
Ensembl chr  X:17,358,416...17,728,178 		JBrowse link
G PAX6 paired box 6 ISO (MGI:69851|PMID:6877261) MGI PMID:6877261 MGI:69851 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PDS5A PDS5 cohesin associated factor A ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr 4:34,149,622...34,303,065
Ensembl chr 4:40,002,869...40,156,698 		JBrowse link
G PDS5B PDS5 cohesin associated factor B ISO (MGI:3847057|PMID:19412548) MGI PMID:19412548 MGI:3847057 NCBI chr13:13,843,910...14,033,043
Ensembl chr13:32,337,765...32,462,333 		JBrowse link
G PITX3 paired like homeodomain 3 ISO (MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279) UniProt PMID:19007884 PMID:19334279 MGI:3831639 MGI:4353482 NCBI chr10:98,833,330...98,846,292 JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (PMID:8812486) BHF-UCL PMID:8812486 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763 		JBrowse link
G PYGO2 pygopus family PHD finger 2 ISO (MGI:3712628|PMID:17425782) MGI PMID:17425782 MGI:3712628 NCBI chr 1:130,305,547...130,310,270
Ensembl chr 1:133,912,411...133,920,308 		JBrowse link
G SIX3 SIX homeobox 3 ISO (MGI:1929788|PMID:11139622) UniProt PMID:11139622 MGI:1929788 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SIX5 SIX homeobox 5 ISO (MGI:1855731|PMID:10802667)
(MGI:1855730|PMID:10802668)		 MGI PMID:10802667 PMID:10802668 MGI:1855730 MGI:1855731 NCBI chr19:42,774,240...42,779,026 JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 ISO (MGI:5513052|PMID:23543054) MGI PMID:23543054 MGI:5513052 NCBI chr13:66,990,025...67,003,900
Ensembl chr13:86,161,905...86,164,430 		JBrowse link
G TBC1D20 TBC1 domain family member 20 ISO (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chr20:644,646...670,860
Ensembl chr20:414,066...431,032 		JBrowse link
G TBC1D32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO (MGI:2151112|PMID:11641223) MGI PMID:11641223 MGI:2151112 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BFSP1 beaded filament structural protein 1 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr20:17,452,664...17,527,917
Ensembl chr20:17,430,635...17,467,819 		JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121), (MGI:3717045|PMID:17065509) MGI PMID:15037121 PMID:17065509 MGI:2673300 MGI:3717045 NCBI chr 3:130,470,362...130,543,610
Ensembl chr 3:137,946,969...138,016,584 		JBrowse link
G CRYGB crystallin gamma B ISO (MGI:3776178|PMID:18172107) MGI PMID:18172107 MGI:3776178 NCBI chr2B:95,373,199...95,378,131
Ensembl chr2B:213,497,286...213,500,951 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:3796810|PMID:18455718)
(MGI:5447585|PMID:23136392)		 MGI PMID:18455718 PMID:23136392 MGI:3796810 MGI:5447585 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 ISO (MGI:3796810|PMID:18455718) MGI PMID:18455718 MGI:3796810 NCBI chr 4:1,933,172...1,948,742 JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:4888440|PMID:21118511) MGI PMID:21118511 MGI:4888440 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G TMOD1 tropomodulin 1 ISO (MGI:5475090|PMID:23144950) CACAO PMID:23144950 MGI:5475090 NCBI chr 9:68,592,195...68,692,001
Ensembl chr 9:96,714,237...96,813,936 		JBrowse link
G VIM vimentin ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FZR1 fizzy and cell division cycle 20 related 1 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr19:2,533,172...2,564,301
Ensembl chr19:3,500,117...3,510,867 		JBrowse link
G KDM5B lysine demethylase 5B ISO RGD PMID:24142921 RGD:9587771 NCBI chr 1:178,323,073...178,406,608
Ensembl chr 1:182,622,425...182,702,994 		JBrowse link
G LOC100978046 gamma-crystallin D ISO (MGI:3762268|PMID:17652744) RGD
MGI		 PMID:8575616 PMID:17652744 MGI:3762268 RGD:1601018 NCBI chr2B:95,352,149...95,356,237
Ensembl chr2B:213,476,336...213,479,279 		JBrowse link
G MAF MAF bZIP transcription factor ISO (MGI:1340085|PMID:10383433)
(MGI:3760711|PMID:12835653)		 MGI PMID:10383433 PMID:12835653 MGI:1340085 MGI:3760711 NCBI chr16:60,188,494...60,194,871 JBrowse link
G NF2 neurofibromin 2 ISO (MGI:4457460|PMID:20181838) UniProt PMID:20181838 MGI:4457460 NCBI chr22:10,648,022...10,738,167
Ensembl chr22:28,454,119...28,544,013 		JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 ISO (MGI:5447585|PMID:23136392) MGI PMID:23136392 MGI:5447585 NCBI chr15:66,566,219...66,953,279
Ensembl chr15:85,776,832...86,157,204 		JBrowse link
G PITX3 paired like homeodomain 3 ISO (MGI:3831639|PMID:19007884) UniProt PMID:19007884 MGI:3831639 NCBI chr10:98,833,330...98,846,292 JBrowse link
G SIX3 SIX homeobox 3 ISO (MGI:2181466|PMID:12072567) UniProt PMID:12072567 MGI:2181466 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SKIL SKI like proto-oncogene ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr 3:167,372,104...167,411,287
Ensembl chr 3:175,562,007...175,600,181 		JBrowse link
G SLC7A11 solute carrier family 7 member 11 ISO RGD PMID:16043861 RGD:2315033 NCBI chr 4:130,529,677...130,601,396
Ensembl chr 4:141,849,343...141,959,849 		JBrowse link
G SMAD3 SMAD family member 3 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G TDRD7 tudor domain containing 7 involved_in ISO (MGI:4943339|PMID:21436445)
(PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chr 9:68,502,761...68,586,633
Ensembl chr 9:96,640,789...96,708,145 		JBrowse link
G TGFB1 transforming growth factor beta 1 ISO (MGI:3720408|PMID:17215516) MGI PMID:17215516 MGI:3720408 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chr2B:90,561,708...90,663,072
Ensembl chr2B:208,702,092...208,797,499 		JBrowse link
G ATF4 activating transcription factor 4 ISO (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chr22:20,426,743...20,428,892
Ensembl chr22:38,248,094...38,249,249 		JBrowse link
G CRYGB crystallin gamma B ISO (MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090) MGI PMID:8626090 PMID:12426373 MGI:3691890 MGI:81294 NCBI chr2B:95,373,199...95,378,131
Ensembl chr2B:213,497,286...213,500,951 		JBrowse link
G EPHA2 EPH receptor A2 ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chr 1:15,259,915...15,292,983
Ensembl chr 1:16,253,513...16,284,787 		JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188)
(PMID:11850194)		 BHF-UCL PMID:10080188 PMID:11850194 MGI:1332720 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763 		JBrowse link
G TBC1D20 TBC1 domain family member 20 ISO (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chr20:644,646...670,860
Ensembl chr20:414,066...431,032 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 ISO (MGI:1316914|PMID:9851982) MGI PMID:9851982 MGI:1316914 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G POU2F1 POU class 2 homeobox 1 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 1:142,653,296...142,860,572
Ensembl chr 1:146,439,581...146,633,921 		JBrowse link
G SIX3 SIX homeobox 3 ISO (MGI:3692850|PMID:17066077) MGI PMID:17066077 MGI:3692850 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SOX2 SRY-box transcription factor 2 ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662 		JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1347707|PMID:10571739) MGI PMID:10571739 MGI:1347707 NCBI chr 6:10,237,834...10,260,843 JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAR3 BCAR3 adaptor protein, NSP family member ISO (MGI:4358852|PMID:19365570) MGI PMID:19365570 MGI:4358852 NCBI chr 1:96,230,498...96,508,028
Ensembl chr 1:94,960,966...95,080,565 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G CTNNB1 catenin beta 1 ISO (MGI:3603687|PMID:16102745) MGI PMID:16102745 MGI:3603687 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 ISO (MGI:1933072|PMID:11290300) MGI PMID:11290300 MGI:1933072 NCBI chr 4:1,933,172...1,948,742 JBrowse link
G LCTL lactase like ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chr15:45,495,650...45,514,096
Ensembl chr15:63,769,946...63,787,409 		JBrowse link
G MEIS1 Meis homeobox 1 ISO (MGI:3028436|PMID:14713950) MGI PMID:14713950 MGI:3028436 NCBI chr2A:66,494,934...66,633,295
Ensembl chr2A:67,615,941...67,752,958 		JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090 		JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507 		JBrowse link
G PITX3 paired like homeodomain 3 ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chr10:98,833,330...98,846,292 JBrowse link
G PROX1 prospero homeobox 1 ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763 		JBrowse link
G SKI SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SOX1 SRY-box transcription factor 1 ISO (MGI:1201714|PMID:9512512) MGI PMID:9512512 MGI:1201714 NCBI chr13:93,023,958...93,269,467 JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TDRD7 tudor domain containing 7 involved_in ISO (MGI:4943339|PMID:21436445)
(PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chr 9:68,502,761...68,586,633
Ensembl chr 9:96,640,789...96,708,145 		JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) MGI PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chr 6:10,237,834...10,260,843 JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091 		JBrowse link
G POU4F2 POU class 4 homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr 4:138,969,157...138,972,730
Ensembl chr 4:150,626,392...150,629,961 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 ISO (MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865) UniProt PMID:10652278 PMID:10890982 PMID:16199865 MGI:1352262 MGI:1861492 MGI:3603877 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G SPRED1 sprouty related EVH1 domain containing 1 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr15:17,182,976...17,286,566
Ensembl chr15:35,439,762...35,536,565 		JBrowse link
G SPRED2 sprouty related EVH1 domain containing 2 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr2A:65,380,608...65,503,139
Ensembl chr2A:66,503,260...66,624,840 		JBrowse link
G SPRED3 sprouty related EVH1 domain containing 3 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr19:35,482,436...35,490,745
Ensembl chr19:44,054,053...44,061,962 		JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr 4:115,570,788...115,578,824
Ensembl chr 4:126,718,811...126,719,770 		JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chr13:61,569,658...61,574,817
Ensembl chr13:80,596,346...80,597,408 		JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator ISO (MGI:1336407|PMID:10321489) MGI PMID:10321489 MGI:1336407 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100 		JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 ISO (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr20:59,385,608...59,392,078 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091 		JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGPTL7 angiopoietin like 7 involved_in ISO (PMID:25622036) UniProt PMID:25622036 NCBI chr 1:9,955,033...9,961,886
Ensembl chr 1:11,176,355...11,183,048 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983 		JBrowse link
G ATOH7 atonal bHLH transcription factor 7 involved_in ISO (MGI:5288596|PMID:21441919)
(PMID:21441919)		 MGI PMID:21441919 MGI:5288596 NCBI chr10:64,714,546...64,716,341 JBrowse link
G ATP2B1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chr12:87,107,900...87,229,514
Ensembl chr12:90,427,560...90,495,320 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 3:10,260,556...10,643,346
Ensembl chr 3:10,611,619...10,738,006 		JBrowse link
G ATP2B3 ATPase plasma membrane Ca2+ transporting 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chr  X:143,068,171...143,133,479
Ensembl chr  X:152,955,109...153,019,445 		JBrowse link
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 1:179,231,712...179,348,759
Ensembl chr 1:183,580,773...183,639,882 		JBrowse link
G CASP2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chr 7:135,283,072...135,307,855
Ensembl chr 7:147,773,749...147,792,958 		JBrowse link
G GPM6A glycoprotein M6A ISO (MGI:3811956|PMID:18776950) UniProt PMID:18776950 MGI:3811956 NCBI chr 4:167,826,285...168,194,244
Ensembl chr 4:180,059,938...180,428,459 		JBrowse link
G OPTN optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chr10:13,104,335...13,142,725
Ensembl chr10:13,077,345...13,115,773 		JBrowse link
G PSEN1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G RAB11FIP4 RAB11 family interacting protein 4 ISO (MGI:3694624|PMID:17089410) MGI PMID:17089410 MGI:3694624 NCBI chr17:25,265,176...25,411,124
Ensembl chr17:26,006,251...26,146,947 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO RGD PMID:2631392 RGD:9585660 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G SLC17A6 solute carrier family 17 member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chr11:22,350,537...22,392,009
Ensembl chr11:22,258,011...22,301,944 		JBrowse link
G SLC17A7 solute carrier family 17 member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chr19:46,443,076...46,455,195
Ensembl chr19:55,365,811...55,377,438 		JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chr12:97,935,177...98,001,240
Ensembl chr12:101,342,113...101,405,844 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G PAX2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 6:10,237,834...10,260,843 JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 ISO (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293 		JBrowse link
G PROX1 prospero homeobox 1 ISO (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 6:10,237,834...10,260,843 JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLX1 distal-less homeobox 1 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr2B:59,382,156...59,387,100
Ensembl chr2B:176,839,721...176,843,909 		JBrowse link
G DLX2 distal-less homeobox 2 ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chr2B:59,396,841...59,400,297
Ensembl chr2B:176,853,913...176,857,079 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 involved_in ISO (MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)
(PMID:22527307)		 UniProt PMID:10652278 PMID:16199865 PMID:22527307 MGI:1352262 MGI:3603877 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:29501879) UniProt PMID:29501879 NCBI chr 4:115,005,136...115,076,369
Ensembl chr 4:126,149,813...126,214,942 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 ISO (MGI:3604916|PMID:16162653) UniProt PMID:16162653 MGI:3604916 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500 		JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASP6 caspase 6 ISO RGD PMID:12917395 RGD:2301324 NCBI chr 4:102,186,215...102,201,992
Ensembl chr 4:112,753,988...112,768,836 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL11B BAF chromatin remodeling complex subunit BCL11B ISO (MGI:2662810|PMID:12717433) MGI PMID:12717433 MGI:2662810 NCBI chr14:79,795,262...79,898,472 JBrowse link
G FZD5 frizzled class receptor 5 ISO (MGI:3826935|PMID:18832390)
(MGI:3821812|PMID:18791178)		 CACAO
MGI		 PMID:18791178 PMID:18832390 MGI:3821812 MGI:3826935 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774 		JBrowse link
G KLF4 Kruppel like factor 4 ISO (MGI:3697243|PMID:17060454) MGI PMID:17060454 MGI:3697243 NCBI chr 9:78,634,545...78,639,447
Ensembl chr 9:106,820,954...106,825,797 		JBrowse link
G LOC103785201 keratin-associated protein 21-1 ISO (MGI:3695523|PMID:17151017) MGI PMID:17151017 MGI:3695523 NCBI chr21:17,117,908...17,118,480
Ensembl chr21:30,502,477...30,502,746 		JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:11120573 RGD:2303744 NCBI chr 3:193,050,895...193,114,931 JBrowse link
G VEGFA vascular endothelial growth factor A ISO (MGI:1339868|PMID:10229225) MGI PMID:10229225 MGI:1339868 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAK1 BCL2 antagonist/killer 1 ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr 6:33,146,998...33,154,755
Ensembl chr 6:34,255,769...34,263,211 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468 		JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr13:9,584,850...9,779,542 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 ISO (MGI:3614611|PMID:16466397) MGI PMID:16466397 MGI:3614611 NCBI chr21:25,695,582...25,702,689 JBrowse link
G KDR kinase insert domain receptor ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr 4:68,813,894...68,861,018
Ensembl chr 4:75,377,375...75,427,109 		JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE23 basic helix-loop-helix family member e23 ISO (MGI:3054140|PMID:15363390) MGI PMID:15363390 MGI:3054140 NCBI chr20:59,385,608...59,392,078 JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr2A:56,017,678...56,076,059
Ensembl chr2A:57,155,000...57,212,500 		JBrowse link
G FBN1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr15:27,358,780...27,593,539
Ensembl chr15:45,682,450...45,918,111 		JBrowse link
G MFAP2 microfibril associated protein 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chr 1:15,918,209...15,924,388 JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC66 coiled-coil domain containing 66 ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr 3:56,504,388...56,557,617
Ensembl chr 3:57,720,490...57,773,326 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475), (MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194) MGI PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G DSCAM DS cell adhesion molecule ISO (MGI:3768917|PMID:18216855) MGI PMID:18216855 MGI:3768917 NCBI chr21:26,366,295...27,192,617
Ensembl chr21:39,699,077...40,524,164 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1B cyclin dependent kinase inhibitor 1B ISO (MGI:1309707|PMID:9784491) MGI PMID:9784491 MGI:1309707 NCBI chr12:12,742,258...12,747,404
Ensembl chr12:13,120,306...13,125,541 		JBrowse link
G CDKN1C cyclin dependent kinase inhibitor 1C ISO (MGI:1309707|PMID:9784491) MGI PMID:9784491 MGI:1309707 NCBI chr11:2,908,537...2,911,134 JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL4 delta like canonical Notch ligand 4 ISO (MGI:5314555|PMID:22323600) UniProt PMID:22323600 MGI:5314555 NCBI chr15:19,871,584...19,881,817
Ensembl chr15:38,121,574...38,129,471 		JBrowse link
G PTF1A pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr10:23,356,165...23,359,579 JBrowse link
G SIX3 SIX homeobox 3 ISO (MGI:4837018|PMID:20890044) UniProt PMID:20890044 MGI:4837018 NCBI chr2A:45,038,634...45,072,867 JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF4 CUGBP Elav-like family member 4 ISO (MGI:5523751|PMID:23932931) MGI PMID:23932931 MGI:5523751 NCBI chr18:30,495,149...30,818,358
Ensembl chr18:34,068,123...34,374,372 		JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239 		JBrowse link
G CNTF ciliary neurotrophic factor ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr11:53,876,081...53,882,870
Ensembl chr11:57,336,792...57,341,121 		JBrowse link
G FGF2 fibroblast growth factor 2 ISO (MGI:2155023|PMID:11747369) MGI PMID:11747369 MGI:2155023 NCBI chr 4:115,005,136...115,076,369
Ensembl chr 4:126,149,813...126,214,942 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACHE acetylcholinesterase (Cartwright blood group) ISO (MGI:3603700|PMID:15579149) MGI PMID:15579149 MGI:3603700 NCBI chr 7:92,915,065...92,922,079
Ensembl chr 7:106,311,944...106,318,184 		JBrowse link
G AHI1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G APC APC regulator of WNT signaling pathway ISO (MGI:3699582|PMID:10982921) MGI PMID:10982921 MGI:3699582 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator ISO (MGI:1277631|PMID:9699561) MGI PMID:9699561 MGI:1277631 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468 		JBrowse link
G BMP4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B ISO (MGI:2654391|PMID:12654290) MGI PMID:12654290 MGI:2654391 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072 		JBrowse link
G C3 complement C3 ISO (MGI:5883383|PMID:28057640) MGI PMID:28057640 MGI:5883383 NCBI chr19:5,708,211...5,753,178
Ensembl chr19:6,629,287...6,674,699 		JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr  X:41,504,804...41,533,501
Ensembl chr  X:49,356,994...49,385,678 		JBrowse link
G CALB1 calbindin 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814 		JBrowse link
G CEP290 centrosomal protein 290 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044 		JBrowse link
G CFH complement factor H ISO (MGI:5883383|PMID:28057640)
(MGI:3760334|PMID:17921253), (MGI:5883383|PMID:28057640), (MGI:6304909|PMID:30705315)		 MGI PMID:17921253 PMID:28057640 PMID:30705315 MGI:3760334 MGI:5883383 MGI:6304909 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521 		JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) BHF-UCL PMID:15300250 NCBI chr 8:57,091,002...57,282,471
Ensembl chr 8:58,816,840...58,945,186 		JBrowse link
G CLCN2 chloride voltage-gated channel 2 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 3:181,383,608...181,399,200
Ensembl chr 3:189,862,489...189,881,049 		JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein ISO (MGI:4849309|PMID:21052544)
(MGI:3695117|PMID:15565184)		 MGI PMID:15565184 PMID:21052544 MGI:3695117 MGI:4849309 NCBI chr 8:5,587,875...5,606,883
Ensembl chr 8:1,658,694...1,700,754 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:5315300|PMID:22447858), (MGI:5608935|PMID:25147295) MGI PMID:22447858 PMID:25147295 MGI:5315300 MGI:5608935 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G CRX cone-rod homeobox ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr19:44,828,119...44,856,284 JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G DRD4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chr11:640,401...646,775 JBrowse link
G DTNBP1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256 		JBrowse link
G GDNF glial cell derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chr 5:72,539,374...72,566,918
Ensembl chr 5:77,577,313...77,601,362 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568 		JBrowse link
G GNB1 G protein subunit beta 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:490,415...596,826
Ensembl chr 1:1,647,340...1,701,614 		JBrowse link
G GRM6 glutamate metabotropic receptor 6 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 5:174,142,754...174,156,294
Ensembl chr 5:181,434,031...181,447,341 		JBrowse link
G GRN granulin precursor ISO (MGI:6101836|PMID:28728022) MGI PMID:28728022 MGI:6101836 NCBI chr17:13,046,329...13,054,236
Ensembl chr17:13,211,784...13,219,609 		JBrowse link
G HPCA hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chr 1:32,176,465...32,185,133
Ensembl chr 1:33,363,673...33,371,524 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922 		JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:3831471|PMID:18940586) MGI PMID:18940586 MGI:3831471 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245 		JBrowse link
G IL4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chr 5:128,091,342...128,099,886
Ensembl chr 5:134,253,039...134,261,581 		JBrowse link
G IMPDH1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 7:120,382,719...120,400,417
Ensembl chr 7:133,036,328...133,053,580 		JBrowse link
G IMPDH2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 3:48,948,965...48,954,276
Ensembl chr 3:50,030,303...50,035,676 		JBrowse link
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO (MGI:3580691|PMID:15345036) MGI PMID:15345036 MGI:3580691 NCBI chr17:70,789,922...70,803,791
Ensembl chr17:76,356,142...76,370,117 		JBrowse link
G LAMA1 laminin subunit alpha 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr18:7,159,568...7,335,363
Ensembl chr18:9,482,895...9,656,800 		JBrowse link
G LAMB2 laminin subunit beta 2 ISO (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chr 3:49,045,419...49,057,340
Ensembl chr 3:50,125,460...50,137,074 		JBrowse link
G LAMC3 laminin subunit gamma 3 ISO (MGI:4454394|PMID:19907020) MGI PMID:19907020 MGI:4454394 NCBI chr 9:102,131,594...102,213,829
Ensembl chr 9:130,777,182...130,861,292 		JBrowse link
G LHX1 LIM homeobox 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LHX2 LIM homeobox 2 ISO (MGI:3836385|PMID:19146846) MGI PMID:19146846 MGI:3836385 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796 		JBrowse link
G LIF LIF interleukin 6 family cytokine ISO RGD PMID:16643897 RGD:2326157 NCBI chr22:11,276,576...11,282,972
Ensembl chr22:29,078,862...29,095,608 		JBrowse link
G LPCAT1 lysophosphatidylcholine acyltransferase 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 5:1,759,243...1,824,102
Ensembl chr 5:1,503,853...1,544,741 		JBrowse link
G MAX MYC associated factor X ISO RGD PMID:14603520 RGD:2316820 NCBI chr14:45,588,366...45,683,828
Ensembl chr14:64,535,120...64,562,671 		JBrowse link
G MDM1 Mdm1 nuclear protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr12:65,803,548...65,841,404
Ensembl chr12:68,588,541...68,626,326 		JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr2A:89,977,226...90,109,970
Ensembl chr2A:113,056,852...113,162,052 		JBrowse link
G MFRP membrane frizzled-related protein ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr11:114,179,998...114,187,716
Ensembl chr11:118,107,317...118,115,050 		JBrowse link
G MUSK muscle associated receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chr 9:81,814,766...81,947,341
Ensembl chr 9:109,980,748...110,107,480 		JBrowse link
G MYH10 myosin heavy chain 10 ISO (MGI:1099556|PMID:9356462), (MGI:1933038|PMID:11283949) MGI PMID:9356462 PMID:11283949 MGI:1099556 MGI:1933038 NCBI chr17:43,023,922...43,180,159
Ensembl chr17:47,761,322...47,911,192 		JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090 		JBrowse link
G NEUROD4 neuronal differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chr12:33,719,986...33,730,012 JBrowse link
G NOS3 nitric oxide synthase 3 ISO RGD PMID:16639026 RGD:7771562 NCBI chr 7:142,577,334...142,600,702
Ensembl chr 7:154,730,009...154,755,233 		JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr2A:91,520,612...91,602,187
Ensembl chr2A:111,625,267...111,706,205 		JBrowse link
G NPHP4 nephrocystin 4 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:4,620,593...4,756,363
Ensembl chr 1:5,878,739...6,012,864 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:3624573|PMID:16702404)
(MGI:2151063|PMID:11997145)		 MGI PMID:11997145 PMID:16702404 MGI:2151063 MGI:3624573 NCBI chr 6:105,965,478...105,988,213
Ensembl chr 6:109,831,223...109,851,436 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 ISO (MGI:4849309|PMID:21052544)
(MGI:3624051|PMID:12407160)		 MGI PMID:12407160 PMID:21052544 MGI:3624051 MGI:4849309 NCBI chr15:50,759,707...50,767,703
Ensembl chr15:69,525,351...69,533,034 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:5619875|PMID:25542970) MGI PMID:25542970 MGI:5619875 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678 		JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chr 3:190,890,242...190,995,133
Ensembl chr 3:201,207,607...201,312,358 		JBrowse link
G PAX4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chr 7:119,605,924...119,613,579
Ensembl chr 7:132,260,859...132,268,516 		JBrowse link
G PAX6 paired box 6 ISO (MGI:3836385|PMID:19146846) RGD
MGI		 PMID:19012751 PMID:19146846 MGI:3836385 RGD:2311636 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PDE6A phosphodiesterase 6A ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 5:145,283,505...145,369,596
Ensembl chr 5:151,294,041...151,375,832 		JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883 		JBrowse link
G PFDN5 prefoldin subunit 5 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr12:35,454,680...35,458,667
Ensembl chr12:36,235,552...36,239,706 		JBrowse link
G POU4F2 POU class 4 homeobox 2 ISO (MGI:3621691|PMID:9630743)
(MGI:80981|PMID:8637595)		 MGI PMID:8637595 PMID:9630743 MGI:3621691 MGI:80981 NCBI chr 4:138,969,157...138,972,730
Ensembl chr 4:150,626,392...150,629,961 		JBrowse link
G PRPH2 peripherin 2 ISO (MGI:5905515|PMID:28053051)
(MGI:3610839|PMID:15964665), (MGI:5905515|PMID:28053051)
(MGI:4849309|PMID:21052544)		 MGI PMID:15964665 PMID:21052544 PMID:28053051 MGI:3610839 MGI:4849309 MGI:5905515 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623 		JBrowse link
G RARB retinoic acid receptor beta ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297 		JBrowse link
G RARG retinoic acid receptor gamma ISO (MGI:81656|PMID:8681798) MGI PMID:8681798 MGI:81656 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RBP4 retinol binding protein 4 ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
G RD3 RD3 regulator of GUCY2D ISO (MGI:4849309|PMID:21052544), (MGI:52860|PMID:8486383) UniProt PMID:8486383 PMID:21052544 MGI:4849309 MGI:52860 NCBI chr 1:187,044,054...187,060,441
Ensembl chr 1:191,907,989...191,924,365 		JBrowse link
G RET ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chr10:40,050,396...40,103,629
Ensembl chr10:43,249,468...43,284,331 		JBrowse link
G RHO rhodopsin ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928 		JBrowse link
G RNPEP arginyl aminopeptidase ISO RGD PMID:15500823 RGD:2325937 NCBI chr 1:177,579,349...177,602,865
Ensembl chr 1:181,880,404...181,903,906 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:5905515|PMID:28053051) MGI PMID:28053051 MGI:5905515 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278 		JBrowse link
G RORB RAR related orphan receptor B ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030 		JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064 		JBrowse link
G RPL24 ribosomal protein L24 ISO (MGI:1097191|PMID:9331275), (MGI:1332363|PMID:10049578) MGI PMID:9331275 PMID:10049578 MGI:1097191 MGI:1332363 NCBI chr 3:98,769,830...98,775,532
Ensembl chr 3:105,449,515...105,455,135 		JBrowse link
G RRM1 ribonucleotide reductase catalytic subunit M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chr11:3,956,528...3,999,205
Ensembl chr11:4,068,119...4,110,474 		JBrowse link
G SERPINF1 serpin family F member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chr17:1,745,597...1,761,399
Ensembl chr17:1,638,556...1,653,568 		JBrowse link
G SKI SKI proto-oncogene ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SLC1A1 solute carrier family 1 member 1 ISO (MGI:6492417|PMID:28703795) MGI PMID:28703795 MGI:6492417 NCBI chr 9:4,323,124...4,420,193
Ensembl chr 9:4,511,491...4,608,337 		JBrowse link
G SLC4A5 solute carrier family 4 member 5 ISO (MGI:5292606|PMID:21705333) MGI PMID:21705333 MGI:5292606 NCBI chr2A:74,288,481...74,428,014
Ensembl chr2A:75,798,510...75,888,448 		JBrowse link
G SOX8 SRY-box transcription factor 8 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088
G SOX9 SRY-box transcription factor 9 ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TBC1D32 TBC1 domain family member 32 ISO (MGI:4439200|PMID:20159594) MGI PMID:20159594 MGI:4439200 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 ISO (MGI:4819740|PMID:20711468) MGI PMID:20711468 MGI:4819740 NCBI chr11:63,120,913...63,132,831
Ensembl chr11:66,429,435...66,441,327 		JBrowse link
G TENT2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr 5:35,622,645...35,696,451
Ensembl chr 5:35,893,841...35,966,932 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 ISO (MGI:3826282|PMID:18973577) MGI PMID:18973577 MGI:3826282 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145 		JBrowse link
G TGIF2 TGFB induced factor homeobox 2 ISO (MGI:3826300|PMID:18926818) MGI PMID:18926818 MGI:3826300 NCBI chr20:32,906,641...32,927,119
Ensembl chr20:34,028,415...34,046,354 		JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 involved_in ISO (PMID:24791901) MGI PMID:24791901 NCBI chr14:56,216,214...56,513,718
Ensembl chr14:75,058,897...75,356,494 		JBrowse link
G TUB TUB bipartite transcription factor ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr11:8,135,981...8,223,414
Ensembl chr11:7,882,680...7,969,434 		JBrowse link
G TULP1 TUB like protein 1 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160 		JBrowse link
G UCHL3 ubiquitin C-terminal hydrolase L3 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr13:56,776,436...56,832,539
Ensembl chr13:75,549,647...75,878,673 		JBrowse link
G USH2A usherin ISO RGD PMID:12160733 RGD:634438 NCBI chr 1:191,193,130...191,994,664
Ensembl chr 1:196,048,086...196,850,216 		JBrowse link
G VAX2 ventral anterior homeobox 2 ISO (MGI:1349226|PMID:10595508) MGI PMID:10595508 MGI:1349226 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463 		JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr20:21,260,871...21,347,430
Ensembl chr20:21,222,138...21,308,561 		JBrowse link
G ZNF513 zinc finger protein 513 involved_in ISO (PMID:20797688) UniProt PMID:20797688 NCBI chr2A:27,381,102...27,384,980
Ensembl chr2A:27,469,512...27,473,068 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232 		JBrowse link
G ARL6 ADP ribosylation factor like GTPase 6 ISO (MGI:5306530|PMID:22139371)
(MGI:4442100|PMID:20333246)		 MGI PMID:20333246 PMID:22139371 MGI:4442100 MGI:5306530 NCBI chr 3:94,832,577...94,870,531
Ensembl chr 3:101,519,718...101,556,419 		JBrowse link
G CALB1 calbindin 1 ISO (PMID:10741426) UniProtKB PMID:10741426 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G FAT3 FAT atypical cadherin 3 ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr11:87,242,937...87,921,955 JBrowse link
G FJX1 four-jointed box kinase 1 ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr11:35,588,579...35,592,107 JBrowse link
G FOXN4 forkhead box N4 ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G IRX6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745 		JBrowse link
G LHX1 LIM homeobox 1 ISO (PMID:10741426)
(MGI:3772525|PMID:18094249)		 UniProtKB
UniProt		 PMID:10741426 PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G MEGF11 multiple EGF like domains 11 ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chr15:44,836,750...45,208,674
Ensembl chr15:63,116,564...63,204,508 		JBrowse link
G PROM1 prominin 1 ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454 		JBrowse link
G PTF1A pancreas associated transcription factor 1a ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr10:23,356,165...23,359,579 JBrowse link
G PTPRM protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chr18:5,879,556...6,706,824
Ensembl chr18:8,206,677...9,030,286 		JBrowse link
G RDH13 retinol dehydrogenase 13 ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267 		JBrowse link
G RS1 retinoschisin 1 ISO (MGI:3055638|PMID:15326152)
(MGI:2179152|PMID:11983912)		 MGI PMID:11983912 PMID:15326152 MGI:2179152 MGI:3055638 NCBI chr  X:11,259,222...11,282,289
Ensembl chr  X:18,624,687...18,657,315 		JBrowse link
G SDK2 sidekick cell adhesion molecule 2 ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952 		JBrowse link
G SLC1A1 solute carrier family 1 member 1 ISO (MGI:4414613|PMID:19766171), (MGI:6155272|PMID:29677370) MGI PMID:19766171 PMID:29677370 MGI:4414613 MGI:6155272 NCBI chr 9:4,323,124...4,420,193
Ensembl chr 9:4,511,491...4,608,337 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 6:50,376,157...50,406,740
Ensembl chr 6:51,635,899...51,664,691 		JBrowse link
G TSPAN12 tetraspanin 12 ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chr 7:112,790,606...112,861,730
Ensembl chr 7:125,478,472...125,549,091 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CRB1 crumbs cell polarity complex component 1 ISO (MGI:2675211|PMID:12915475), (MGI:3696487|PMID:17234588), (MGI:5608935|PMID:25147295) MGI PMID:12915475 PMID:17234588 PMID:25147295 MGI:2675211 MGI:3696487 MGI:5608935 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G LRP5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MAN2A1 mannosidase alpha class 2A member 1 ISO (MGI:4453938|PMID:20144606) MGI PMID:20144606 MGI:4453938 NCBI chr 5:105,034,104...105,219,011
Ensembl chr 5:110,841,349...111,025,187 		JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438 		JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507 		JBrowse link
G PROM1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454 		JBrowse link
G PTF1A pancreas associated transcription factor 1a ISO (MGI:3701413|PMID:17301087) MGI PMID:17301087 MGI:3701413 NCBI chr10:23,356,165...23,359,579 JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278 		JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G SOX2 SRY-box transcription factor 2 ISO (MGI:3624065|PMID:16651659) MGI PMID:16651659 MGI:3624065 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662 		JBrowse link
G VSX2 visual system homeobox 2 ISO (MGI:3701027|PMID:16854970), (MGI:79586|PMID:8630490) MGI PMID:8630490 PMID:16854970 MGI:3701027 MGI:79586 NCBI chr14:54,797,734...54,821,081 JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063 		JBrowse link
G ACVRL1 activin A receptor like type 1 ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr12:36,839,869...36,856,351
Ensembl chr12:37,615,888...37,631,691 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO (MGI:3829820|PMID:19005183) MGI PMID:19005183 MGI:3829820 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:4950335|PMID:21212189) MGI PMID:21212189 MGI:4950335 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885 		JBrowse link
G PDGFB platelet derived growth factor subunit B ISO (MGI:5607451|PMID:25224828) MGI PMID:25224828 MGI:5607451 NCBI chr22:20,127,223...20,148,407
Ensembl chr22:37,944,018...37,964,883 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha ISO (MGI:1931346|PMID:11239463) UniProt PMID:11239463 MGI:1931346 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097 		JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO (MGI:2680741|PMID:14624252)
(MGI:1931346|PMID:11239463)		 UniProt PMID:11239463 PMID:14624252 MGI:1931346 MGI:2680741 NCBI chr 5:145,538,330...145,580,312
Ensembl chr 5:151,543,891...151,585,530 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF15 Rho guanine nucleotide exchange factor 15 ISO (MGI:5441394|PMID:22535667) MGI PMID:22535667 MGI:5441394 NCBI chr17:43,336,764...43,349,787
Ensembl chr17:48,070,223...48,082,499 		JBrowse link
G CLIC4 chloride intracellular channel 4 ISO (MGI:3837628|PMID:19197003) MGI PMID:19197003 MGI:3837628 NCBI chr 1:23,947,030...24,042,139
Ensembl chr 1:24,975,260...25,017,904 		JBrowse link
G FZD4 frizzled class receptor 4 involved_in ISO (MGI:4366716|PMID:19837032)
(PMID:12172548), (PMID:15024691)		 MGI
BHF-UCL		 PMID:12172548 PMID:15024691 PMID:19837032 MGI:4366716 NCBI chr11:81,973,680...82,007,733
Ensembl chr11:85,611,989...85,616,065 		JBrowse link
G LRP5 LDL receptor related protein 5 ISO (MGI:4366716|PMID:19837032)
(MGI:2178168|PMID:11956231)
(MGI:3790936|PMID:18263894)		 MGI
RGD		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 MGI:2178168 MGI:3790936 MGI:4366716 RGD:40902996 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G NDP norrin cystine knot growth factor NDP ISO (MGI:4366716|PMID:19837032) MGI PMID:19837032 MGI:4366716 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067 		JBrowse link
G NRP1 neuropilin 1 ISO (MGI:5562961|PMID:24401374) BHF-UCL PMID:24401374 MGI:5562961 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648 		JBrowse link
G RHOJ ras homolog family member J ISO (MGI:5441394|PMID:22535667) MGI PMID:22535667 MGI:5441394 NCBI chr14:43,783,185...43,872,000
Ensembl chr14:62,039,418...62,126,908 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CABP4 calcium binding protein 4 ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758 		JBrowse link
G CASZ1 castor zinc finger 1 ISO (MGI:5630049|PMID:24467707) MGI PMID:24467707 MGI:5630049 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091 		JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245 		JBrowse link
G IRX5 iroquois homeobox 5 ISO (MGI:3776945|PMID:18322081) MGI PMID:18322081 MGI:3776945 NCBI chr16:35,164,884...35,168,189
Ensembl chr16:54,272,412...54,275,124 		JBrowse link
G IRX6 iroquois homeobox 6 ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745 		JBrowse link
G VSX1 visual system homeobox 1 ISO (MGI:3776945|PMID:18322081)
(MGI:3029641|PMID:14745032)
(MGI:3039332|PMID:15043821)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 MGI:3029641 MGI:3039332 MGI:3776945 NCBI chr20:25,011,149...25,025,545
Ensembl chr20:25,361,216...25,372,705 		JBrowse link
G VSX2 visual system homeobox 2 ISO (MGI:79586|PMID:8630490) MGI PMID:8630490 MGI:79586 NCBI chr14:54,797,734...54,821,081 JBrowse link
G ZHX2 zinc fingers and homeoboxes 2 ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chr 8:119,473,607...119,668,790
Ensembl chr 8:122,401,567...122,404,080 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL4A1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) BHF-UCL PMID:20818663 NCBI chr13:91,282,617...91,440,187
Ensembl chr13:110,407,009...110,562,529 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO (MGI:4431324|PMID:20032512) UniProt PMID:20032512 MGI:4431324 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824 		JBrowse link
G FZD4 frizzled class receptor 4 ISO (MGI:3621833|PMID:15035989) BHF-UCL PMID:15035989 MGI:3621833 NCBI chr11:81,973,680...82,007,733
Ensembl chr11:85,611,989...85,616,065 		JBrowse link
G