ONTOLOGY REPORT - ANNOTATIONS
Term: histone H3 demethylase activity
Accession: GO:0141052
browse the term
Definition: Catalysis of the removal of a methyl group from a modified lysine residue of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate.
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Kdm1a
lysine demethylase 1A
enables
ISO IBA
(PMID:24843136) GO_REF:0000033 (PMID:20228790), (PMID:27292636)
RGD GO_Central
PMID:20228790 PMID:24843136 PMID:27292636
GO_REF:0000033
NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319
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Kdm1b
lysine demethylase 1B
enables
ISO
(PMID:23260659), (PMID:23266887), (PMID:23357850) (PMID:19407342), (PMID:19727073) (PMID:30970244)
RGD
PMID:19407342 PMID:19727073 PMID:23260659 PMID:23266887 PMID:23357850 PMID:30970244 More...
NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
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Hr
HR, lysine demethylase and nuclear receptor corepressor
enables
IEA
GO_REF:0000003
UniProt
GO_REF:0000003
NCBI chr15:52,036,540...52,056,019
Ensembl chr15:45,626,835...45,646,313
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Kdm3a
lysine demethylase 3A
enables
IEA
GO_REF:0000003
UniProt
GO_REF:0000003
NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:103,630,908...103,675,073
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Kdm6a
lysine demethylase 6A
enables
IBA ISO
GO_REF:0000033 (PMID:22949634)
GO_Central RGD
PMID:22949634
GO_REF:0000033
NCBI chr X:4,337,466...4,477,100
Ensembl chr X:4,337,750...4,477,062
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Kdm6b
lysine demethylase 6B
enables
ISO IBA
(PMID:28262558) (PMID:17928865), (PMID:18716661), (PMID:23856522) GO_REF:0000033
RGD GO_Central
PMID:17928865 PMID:18716661 PMID:23856522 PMID:28262558
GO_REF:0000033
NCBI chr10:54,619,520...54,641,014
Ensembl chr10:54,121,848...54,130,794
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Kdm7a
lysine demethylase 7A
enables
ISO
(PMID:20023638), (PMID:20194436), (PMID:20622853) (PMID:20194436)
RGD
PMID:20023638 PMID:20194436 PMID:20622853
NCBI chr 4:68,866,263...68,992,979
Ensembl chr 4:67,904,307...67,966,998
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Phf8
PHD finger protein 8
enables
ISO
(PMID:20622853), (PMID:20622854)
RGD
PMID:20622853 PMID:20622854
NCBI chr X:20,524,103...20,623,459
Ensembl chr X:20,524,558...20,623,410
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Uty
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr Y:1,018,111...1,178,493
Ensembl chr Y:924,168...1,103,422
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Kdm2a
lysine demethylase 2A
enables
ISO
(PMID:20417597), (PMID:21187428), (PMID:28262558)
RGD
PMID:20417597 PMID:21187428 PMID:28262558
NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:201,612,453...201,680,787
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Kdm2b
lysine demethylase 2B
enables
ISO
(PMID:26237645) (PMID:21540074)
RGD
PMID:21540074 PMID:26237645
NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355
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Kdm4a
lysine demethylase 4A
enables
ISO IBA
(PMID:16024779), (PMID:21914792) GO_REF:0000033
RGD GO_Central
PMID:16024779 PMID:21914792
GO_REF:0000033
NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
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Kdm4b
lysine demethylase 4B
enables
ISO
(PMID:21914792) (PMID:16738407)
RGD
PMID:16738407 PMID:21914792
NCBI chr 9:1,245,885...1,324,384
Ensembl chr 9:1,158,752...1,236,543
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Kdm4c
lysine demethylase 4C
enables
ISO IBA
(PMID:21914792) GO_REF:0000033
RGD GO_Central
PMID:21914792
GO_REF:0000033
NCBI chr 5:93,146,404...93,353,040
Ensembl chr 5:88,100,733...88,306,818
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Kdm7a
lysine demethylase 7A
enables
ISO
(PMID:20622853)
RGD
PMID:20622853
NCBI chr 4:68,866,263...68,992,979
Ensembl chr 4:67,904,307...67,966,998
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Kdm8
lysine demethylase 8
enables
ISO IBA IEA ISS
(PMID:20457893) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:20457893
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 1:189,444,527...189,459,507
Ensembl chr 1:180,020,656...180,028,841
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Phf8
PHD finger protein 8
enables
ISO
(PMID:20208542), (PMID:20622853)
RGD
PMID:20208542 PMID:20622853
NCBI chr X:20,524,103...20,623,459
Ensembl chr X:20,524,558...20,623,410
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Riox1
ribosomal oxygenase 1
enables
IBA ISO
GO_REF:0000033 (PMID:19927124)
GO_Central RGD
PMID:19927124
GO_REF:0000033
NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
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Riox2
ribosomal oxygenase 2
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:40,861,365...40,884,782
Ensembl chr11:40,860,774...40,884,574
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Uty
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
enables
ISO
(PMID:22192413)
RGD
PMID:22192413
NCBI chr Y:1,018,111...1,178,493
Ensembl chr Y:924,168...1,103,422
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Riox1
ribosomal oxygenase 1
enables
IEA
GO_REF:0000116 GO_REF:0000003
RHEA UniProt
GO_REF:0000003 GO_REF:0000116
NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
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Kdm1a
lysine demethylase 1A
enables
ISO
(PMID:24217620) (PMID:15620353), (PMID:24217620), (PMID:27292636)
RGD
PMID:15620353 PMID:24217620 PMID:27292636
NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319
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Kdm1b
lysine demethylase 1B
enables
ISO
(PMID:19407342), (PMID:19727073)
RGD
PMID:19407342 PMID:19727073
NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
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Kdm5a
lysine demethylase 5A
enables
ISO
(PMID:18483221)
RGD
PMID:18483221
NCBI chr 4:155,238,124...155,316,121
Ensembl chr 4:153,565,846...153,642,422
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Kdm5b
lysine demethylase 5B
enables
ISO
(PMID:18048344), (PMID:24952722), (PMID:27214403), (PMID:28262558) (PMID:17320160)
RGD
PMID:17320160 PMID:18048344 PMID:24952722 PMID:27214403 PMID:28262558
NCBI chr13:48,554,367...48,625,721
Ensembl chr13:46,002,542...46,073,872
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Kdm5c
lysine demethylase 5C
enables
ISO
(PMID:17320160), (PMID:18078810), (PMID:28262558) (PMID:23246292)
RGD
PMID:17320160 PMID:18078810 PMID:23246292 PMID:28262558
NCBI chr X:21,345,459...21,387,045
Ensembl chr X:21,345,481...21,381,870
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Kdm5d
lysine demethylase 5D
enables
ISO
(PMID:17320160)
RGD
PMID:17320160
NCBI chr Y:551,621...647,742
Ensembl chr Y:530,401...624,018
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Riox1
ribosomal oxygenase 1
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
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Riox2
ribosomal oxygenase 2
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:40,861,365...40,884,782
Ensembl chr11:40,860,774...40,884,574
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Kdm1b
lysine demethylase 1B
NOT|enables
ISO
(PMID:19407342), (PMID:19727073)
RGD
PMID:19407342 PMID:19727073
NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
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Kdm5a
lysine demethylase 5A
enables
ISO IBA
(PMID:18270511) GO_REF:0000033
RGD GO_Central
PMID:18270511
GO_REF:0000033
NCBI chr 4:155,238,124...155,316,121
Ensembl chr 4:153,565,846...153,642,422
G
Kdm5b
lysine demethylase 5B
enables
ISO IBA
(PMID:20228790), (PMID:20403335) GO_REF:0000033
RGD GO_Central
PMID:20228790 PMID:20403335
GO_REF:0000033
NCBI chr13:48,554,367...48,625,721
Ensembl chr13:46,002,542...46,073,872
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Kdm5c
lysine demethylase 5C
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:21,345,459...21,387,045
Ensembl chr X:21,345,481...21,381,870
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Kdm5d
lysine demethylase 5D
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr Y:551,621...647,742
Ensembl chr Y:530,401...624,018
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Riox1
ribosomal oxygenase 1
enables
ISO
(PMID:19927124)
RGD
PMID:19927124
NCBI chr 6:103,579,642...103,582,260
Ensembl chr 6:103,579,642...103,582,250
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Hr
HR, lysine demethylase and nuclear receptor corepressor
enables
IEA IBA
GO_REF:0000002 GO_REF:0000033
InterPro GO_Central
GO_REF:0000002 GO_REF:0000033
NCBI chr15:52,036,540...52,056,019
Ensembl chr15:45,626,835...45,646,313
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Jmjd1c
jumonji domain containing 1C
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr20:21,330,990...21,508,580
Ensembl chr20:21,332,147...21,463,122
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Kdm1a
lysine demethylase 1A
enables
ISO
(PMID:16079795), (PMID:20228790)
RGD
PMID:16079795 PMID:20228790
NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319
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Kdm3a
lysine demethylase 3A
enables
ISO IBA IEA
(PMID:28262558) GO_REF:0000033 MGI:3764891 (PMID:17938240), (PMID:17943087), (PMID:17991879) GO_REF:0000002
RGD GO_Central InterPro
PMID:17938240 PMID:17943087 PMID:17991879 PMID:28262558
GO_REF:0000002 GO_REF:0000033
NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:103,630,908...103,675,073
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Kdm3b
lysine demethylase 3B
enables
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:26,655,004...26,710,814
Ensembl chr18:26,380,964...26,436,628
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Kdm4a
lysine demethylase 4A
enables
IBA ISO
GO_REF:0000033 (PMID:16738407)
GO_Central RGD
PMID:16738407
GO_REF:0000033
NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
G
Kdm4b
lysine demethylase 4B
enables
ISO IBA
(PMID:28262558) (PMID:16738407) GO_REF:0000033
RGD GO_Central
PMID:16738407 PMID:28262558
GO_REF:0000033
NCBI chr 9:1,245,885...1,324,384
Ensembl chr 9:1,158,752...1,236,543
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Kdm4c
lysine demethylase 4C
enables
ISO IBA
(PMID:18066052), (PMID:28262558) (PMID:16738407), (PMID:17938240) GO_REF:0000033
RGD GO_Central
PMID:16738407 PMID:17938240 PMID:18066052 PMID:28262558
GO_REF:0000033
NCBI chr 5:93,146,404...93,353,040
Ensembl chr 5:88,100,733...88,306,818
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Kdm4d
lysine demethylase 4D
enables
ISO IBA
(PMID:25124442) MGI:5051955 (PMID:16738407), (PMID:21293030), (PMID:24550317) GO_REF:0000033
RGD GO_Central
PMID:16738407 PMID:21293030 PMID:24550317 PMID:25124442
GO_REF:0000033
NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
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Kdm7a
lysine demethylase 7A
enables
ISO
(PMID:20023638), (PMID:20194436), (PMID:20622853) (PMID:20194436)
RGD
PMID:20023638 PMID:20194436 PMID:20622853
NCBI chr 4:68,866,263...68,992,979
Ensembl chr 4:67,904,307...67,966,998
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Phf2
PHD finger protein 2
enables
ISO
(PMID:21532585)
RGD
PMID:21532585
NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
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Phf8
PHD finger protein 8
enables
ISO
(PMID:20023638), (PMID:20208542), (PMID:20346720), (PMID:20622853), (PMID:20622854)
RGD
PMID:20023638 PMID:20208542 PMID:20346720 PMID:20622853 PMID:20622854
NCBI chr X:20,524,103...20,623,459
Ensembl chr X:20,524,558...20,623,410
G
Hr
HR, lysine demethylase and nuclear receptor corepressor
enables
IEA
GO_REF:0000003 GO_REF:0000116
UniProt RHEA
GO_REF:0000003 GO_REF:0000116
NCBI chr15:52,036,540...52,056,019
Ensembl chr15:45,626,835...45,646,313
G
Kdm3a
lysine demethylase 3A
enables
ISO IEA
(PMID:16603237) GO_REF:0000107
RGD Ensembl
PMID:16603237
GO_REF:0000107
NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:103,630,908...103,675,073
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Kdm1a
lysine demethylase 1A
enables
ISO
(PMID:20833138)
RGD
PMID:20833138
NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:148,782,976...148,838,319
G
Kdm4a
lysine demethylase 4A
enables
ISO
(PMID:21914792)
RGD
PMID:21914792
NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
G
Kdm4b
lysine demethylase 4B
enables
ISO
(PMID:21914792)
RGD
PMID:21914792
NCBI chr 9:1,245,885...1,324,384
Ensembl chr 9:1,158,752...1,236,543
G
Kdm4c
lysine demethylase 4C
enables
ISO
(PMID:17277772), (PMID:21914792)
RGD
PMID:17277772 PMID:21914792
NCBI chr 5:93,146,404...93,353,040
Ensembl chr 5:88,100,733...88,306,818
G
Kdm4d
lysine demethylase 4D
enables
ISO
(PMID:21914792)
RGD
PMID:21914792
NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
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Jmjd6
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
enables
ISO IEA ISS
(PMID:17947579) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:17947579
GO_REF:0000024 GO_REF:0000107
NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182
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