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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of ncRNA transcription
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Accession:GO:0140747 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription of a non-protein coding gene from a DNA-template.



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negative regulation of lncRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)
RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)
RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691
JBrowse link
negative regulation of miRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO (PMID:24827165), (PMID:25152461) RGD PMID:24827165 PMID:25152461 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:28124060)
Ensembl
RGD
PMID:28124060 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20388878)
Ensembl
RGD
PMID:20388878 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Gas5 growth arrest specific 5 IMP RGD PMID:30824348 RGD:155882547 NCBI chr13:73,303,611...73,306,932 JBrowse link
G Gata6 GATA binding protein 6 involved_in IMP PMID:25950484 BHF-UCL PMID:25950484 RGD:11541106 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:Q6NZM9 (MGI:5754467|PMID:24675724) RGD PMID:24675724 MGI:5754467 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hdac4 histone deacetylase 4 involved_in ISO
IEA
UniProtKB:P70288 (MGI:5754467|PMID:24675724)
GO_REF:0000107
RGD
Ensembl
PMID:24675724 GO_REF:0000107 MGI:5754467 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISO
IEA
(PMID:31368162)
GO_REF:0000107
RGD
Ensembl
PMID:31368162 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Lilrb4 leukocyte immunoglobulin like receptor B4 involved_in ISO (PMID:22387553) RGD PMID:22387553 NCBI chr 1:69,805,020...69,810,628
Ensembl chr 1:69,805,250...69,810,660
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 involved_in ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 involved_in ISO (PMID:20388878) RGD PMID:20388878 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319
JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 involved_in ISO UniProtKB:Q14934 (PMID:23543060) RGD PMID:23543060 NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 involved_in ISO UniProtKB:Q12968 (PMID:23543060) RGD PMID:23543060 NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610
JBrowse link
G Nfib nuclear factor I/B involved_in ISO (PMID:18384814) RGD PMID:18384814 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
IEA
(PMID:26493107)
GO_REF:0000107
RGD
Ensembl
PMID:26493107 GO_REF:0000107 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha involved_in ISO (PMID:21636785) RGD PMID:21636785 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta involved_in ISO (MGI:5705218|PMID:20445066) RGD PMID:20445066 MGI:5705218 NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of_or_within
involved_in
ISO (PMID:24751522)
(PMID:28522568)
RGD PMID:24751522 PMID:28522568 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:28122350) RGD PMID:28122350 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (PMID:23878390) RGD PMID:23878390 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Rest RE1-silencing transcription factor involved_in IEA
ISO
GO_REF:0000107
(PMID:33108349)
Ensembl
RGD
PMID:33108349 GO_REF:0000107 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (PMID:32141990) RGD PMID:32141990 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:26687115) RGD PMID:26687115 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Srf serum response factor involved_in ISO (MGI:5688838|PMID:21303526) RGD PMID:21303526 MGI:5688838 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:25605017) RGD PMID:25605017 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in IMP PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:27027434) RGD PMID:27027434 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5754467|PMID:24675724) RGD PMID:24675724 MGI:5754467 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zfp512b zinc finger protein 512B involved_in ISO (PMID:20639536) RGD PMID:20639536 NCBI chr 3:168,687,520...168,698,067
Ensembl chr 3:168,687,521...168,698,091
JBrowse link
negative regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in ISO
IEA
(PMID:12917378)
GO_REF:0000107
RGD
Ensembl
PMID:12917378 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936
JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain-containing acts_upstream_of_or_within ISO (MGI:1306907|PMID:9774341) RGD PMID:9774341 MGI:1306907 NCBI chr13:83,755,874...83,769,982
Ensembl chr13:83,756,108...83,769,332
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO
IBA
UniProtKB:Q9P0M6 (PMID:24071584)
GO_REF:0000033
(MGI:5559643|PMID:24071584)
RGD
GO_Central
PMID:24071584 GO_REF:0000033 MGI:5559643 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO
IBA
UniProtKB:P0C0S8 (PMID:24071584)
GO_REF:0000033
RGD
GO_Central
PMID:24071584 GO_REF:0000033 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) RGD PMID:27729611 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
positive regulation of miRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:30729664)
Ensembl
RGD
PMID:30729664 GO_REF:0000107 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977
JBrowse link
G Apln apelin involved_in ISO (PMID:23263626) RGD PMID:23263626 NCBI chr  X:127,180,801...127,213,567
Ensembl chr  X:127,203,823...127,213,391
JBrowse link
G Ar androgen receptor involved_in IEA
ISO
GO_REF:0000107
(PMID:25802280)
Ensembl
RGD
PMID:25802280 GO_REF:0000107 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO UniProtKB:P23769 (PMID:27780851) RGD PMID:27780851 NCBI chr 4:104,259,992...104,292,168
Ensembl chr 4:104,259,992...104,292,168
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P21275 (MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P21274 (MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:4939577 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Ctcf CCCTC-binding factor involved_in IMP PMID:27124358 BHF-UCL PMID:27124358 RGD:11344932 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:21673316) RGD PMID:21673316 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Egr1 early growth response 1 involved_in ISO
IEA
(PMID:19307576)
GO_REF:0000107
RGD
Ensembl
PMID:19307576 GO_REF:0000107 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO
IEA
(PMID:21711453)
GO_REF:0000107
RGD
Ensembl
PMID:21711453 GO_REF:0000107 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit involved_in IDA
ISO
PMID:18384814
(PMID:30670568)
RGD PMID:30670568 PMID:18384814 RGD:10402042 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit involved_in ISO (PMID:21673316) RGD PMID:21673316 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930
JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (MGI:4881905|PMID:19933931) RGD PMID:19933931 MGI:4881905 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
JBrowse link
G Gata2 GATA binding protein 2 involved_in ISO
IBA
UniProtKB:Q96SQ7 (PMID:27780851)
GO_REF:0000033
RGD
GO_Central
PMID:27780851 GO_REF:0000033 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (PMID:26451614) RGD PMID:26451614 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (MGI:5780531|PMID:25590961) RGD PMID:25590961 MGI:5780531 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
JBrowse link
G Gnl3 G protein nucleolar 3 involved_in ISO (PMID:25569094) RGD PMID:25569094 NCBI chr16:6,207,402...6,213,491
Ensembl chr16:6,207,402...6,213,392
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:19141645), (PMID:19782034), (PMID:24983504), (PMID:33108349)
(MGI:6430928|PMID:25587068)
Ensembl
RGD
PMID:19141645 PMID:19782034 PMID:24983504 PMID:25587068 PMID:33108349 GO_REF:0000107 MGI:6430928 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Il10 interleukin 10 involved_in ISO (PMID:23071313) RGD PMID:23071313 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in IDA
ISO
PMID:18384814
(PMID:24375836)
RGD PMID:24375836 PMID:18384814 RGD:10402042 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Klf4 KLF transcription factor 4 involved_in ISO (PMID:23867820) RGD PMID:23867820 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Klf5 KLF transcription factor 5 involved_in ISO (PMID:28408180) RGD PMID:28408180 NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445
JBrowse link
G Mrtfa myocardin related transcription factor A involved_in ISO UniProtKB:P11831 (PMID:23764775) RGD PMID:23764775 NCBI chr 7:112,544,305...112,714,418
Ensembl chr 7:112,544,312...112,714,418
JBrowse link
G Mrtfb myocardin related transcription factor B involved_in ISO UniProtKB:P11831 (PMID:23764775) RGD PMID:23764775 NCBI chr10:1,116,315...1,278,106
Ensembl chr10:1,116,310...1,277,897
JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in ISO (PMID:25857263) RGD PMID:25857263 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:27791094) RGD PMID:27791094 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myocd myocardin involved_in IEA
ISO
GO_REF:0000107
(MGI:5519155|PMID:24068960), (MGI:6414695|PMID:28342807)
Ensembl
RGD
PMID:24068960 PMID:28342807 GO_REF:0000107 MGI:5519155 MGI:6414695 NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
JBrowse link
G Ngfr nerve growth factor receptor involved_in IEA
ISO
GO_REF:0000107
(PMID:26268439)
Ensembl
RGD
PMID:26268439 GO_REF:0000107 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:25323858)
Ensembl
RGD
PMID:25323858 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Notch3 notch receptor 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:25323858)
Ensembl
RGD
PMID:25323858 GO_REF:0000107 NCBI chr 7:11,132,984...11,184,025
Ensembl chr 7:11,133,706...11,184,025
JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 acts_upstream_of
involved_in
ISO
IEA
(MGI:6446466|PMID:31501273)
GO_REF:0000107
RGD
Ensembl
PMID:31501273 GO_REF:0000107 MGI:6446466 NCBI chr 1:95,041,967...95,047,358
Ensembl chr 1:95,041,967...95,047,377
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:2385930 (MGI:5574156|PMID:24349493) RGD PMID:24349493 MGI:5574156 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in ISO
IEA
(PMID:27334923)
(MGI:5616008|PMID:25510864)
GO_REF:0000107
RGD
Ensembl
PMID:25510864 PMID:27334923 GO_REF:0000107 MGI:5616008 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375
JBrowse link
G Pax6 paired box 6 involved_in IEA
ISO
GO_REF:0000107
(PMID:24802670)
Ensembl
RGD
PMID:24802670 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pdgfb platelet derived growth factor subunit B involved_in ISO
IEA
(PMID:19088079)
GO_REF:0000107
RGD
Ensembl
PMID:19088079 GO_REF:0000107 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:25704091), (PMID:28566713) RGD PMID:25704091 PMID:28566713 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Prl prolactin involved_in ISO (PMID:23619365) RGD PMID:23619365 NCBI chr17:37,859,999...37,870,062
Ensembl chr17:37,860,007...37,870,062
JBrowse link
G Ptger3 prostaglandin E receptor 3 acts_upstream_of_or_within ISO (MGI:6480251|PMID:31544253) RGD PMID:31544253 MGI:6480251 NCBI chr 2:246,606,131...246,750,970
Ensembl chr 2:246,606,183...246,684,434
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in IMP
ISO
PMID:20546595
UniProtKB:P30990 (PMID:21806946), (PMID:23619365), (PMID:26268439)
PMID:28484848
RGD PMID:21806946 PMID:23619365 PMID:26268439 PMID:20546595 PMID:28484848 RGD:12903243, RGD:13601996 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Smad1 SMAD family member 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4939577|PMID:21145505)
Ensembl
RGD
PMID:21145505 GO_REF:0000107 MGI:4939577 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of
ISO (PMID:24378993), (PMID:26311719)
(PMID:30729664)
RGD PMID:24378993 PMID:26311719 PMID:30729664 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:6094665|PMID:23426367)
Ensembl
RGD
PMID:23426367 GO_REF:0000107 MGI:6094665 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:4939577 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA
(PMID:25569094)
GO_REF:0000107
RGD
Ensembl
PMID:25569094 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO
IEA
(PMID:20972335)
GO_REF:0000107
(MGI:5693226|PMID:18384814)
RGD
Ensembl
PMID:18384814 PMID:20972335 GO_REF:0000107 MGI:5693226 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24296663)
(MGI:5501359|PMID:23823476)
(PMID:31501273)
RGD PMID:23823476 PMID:24296663 PMID:31501273 MGI:5501359 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5501359|PMID:23823476)
Ensembl
RGD
PMID:23823476 GO_REF:0000107 MGI:5501359 NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848
JBrowse link
G Srf serum response factor involved_in ISO (MGI:4354665|PMID:19578358), (MGI:5688838|PMID:21303526)
UniProtKB:Q969V6 (PMID:23764775)
RGD PMID:19578358 PMID:21303526 PMID:23764775 MGI:4354665 MGI:5688838 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA
(PMID:19390056), (PMID:23820254)
(MGI:5897552|PMID:20546595)
GO_REF:0000107
RGD
Ensembl
PMID:19390056 PMID:20546595 PMID:23820254 GO_REF:0000107 MGI:5897552 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tead1 TEA domain transcription factor 1 involved_in ISO (PMID:26045994) RGD PMID:26045994 NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:25569094) RGD PMID:25569094 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:26311719), (PMID:26493107) RGD PMID:26311719 PMID:26493107 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA
(PMID:25217442)
GO_REF:0000107
RGD
Ensembl
PMID:25217442 GO_REF:0000107 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in IMP PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tnf tumor necrosis factor acts_upstream_of ISO (PMID:22499991) RGD PMID:22499991 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO
IEA
UniProtKB:P01375 (PMID:20546595), (PMID:22499991), (PMID:22578566)
GO_REF:0000107
(PMID:30089260)
RGD
Ensembl
PMID:20546595 PMID:22499991 PMID:22578566 PMID:30089260 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Wt1 WT1 transcription factor involved_in ISO
IEA
(PMID:23042785)
GO_REF:0000107
RGD
Ensembl
PMID:23042785 GO_REF:0000107 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
positive regulation of piRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mybl1 MYB proto-oncogene like 1 involved_in ISO (MGI:5495879|PMID:23523368) RGD PMID:23523368 MGI:5495879 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183
JBrowse link
positive regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO
ISS
(PMID:28254838)
GO_REF:0000024
RGD
UniProt
PMID:28254838 GO_REF:0000024 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865
JBrowse link
G Mepce methylphosphate capping enzyme involved_in ISO (PMID:28254838) RGD PMID:28254838 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514
JBrowse link
G Myod1 myogenic differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6148658|PMID:25217815)
UniProt
RGD
PMID:25217815 GO_REF:0000024 MGI:6148658 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Zfp143 zinc finger protein 143 involved_in ISO (PMID:9009278) RGD PMID:9009278 NCBI chr 1:164,109,041...164,144,902
Ensembl chr 1:164,109,116...164,144,902
JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550
JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO
IEA
(PMID:23203802)
GO_REF:0000107
RGD
Ensembl
PMID:23203802 GO_REF:0000107 NCBI chr17:15,190,191...15,235,203
Ensembl chr17:15,190,265...15,229,541
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:63,121,142...63,138,550
Ensembl chr 7:63,121,142...63,138,495
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:24036451)
GO_REF:0000107
RGD
Ensembl
PMID:24036451 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Ncl nucleolin involved_in ISO
IEA
(PMID:24071584)
GO_REF:0000107
RGD
Ensembl
PMID:24071584 GO_REF:0000107 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283 PMID:24036451 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA
(PMID:22368283)
GO_REF:0000107
RGD
Ensembl
PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
regulation of miRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Ddx5 DEAD-box helicase 5 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Tgfb1 transforming growth factor, beta 1 NOT|involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO
ISS
(PMID:24207024)
GO_REF:0000024
RGD
UniProt
PMID:24207024 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      regulation of metabolic process 6581
        regulation of macromolecule metabolic process 6028
          regulation of macromolecule biosynthetic process 5232
            regulation of gene expression 5117
              regulation of DNA-templated transcription 3214
                regulation of ncRNA transcription 102
                  negative regulation of ncRNA transcription associated with protein coding gene TSS/TES 0
                  regulation of antisense RNA transcription + 0
                  regulation of lncRNA transcription + 2
                  regulation of miRNA transcription + 80
                  regulation of piRNA transcription + 1
                  regulation of snRNA transcription by RNA polymerase II + 5
                  regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
Path 2
Term Annotations click to browse term
  biological_process 20328
    metabolic process 11732
      cellular metabolic process 10286
        cellular aromatic compound metabolic process 5963
          nucleobase-containing compound metabolic process 5720
            nucleic acid metabolic process 5123
              RNA metabolic process 4527
                RNA biosynthetic process 3391
                  DNA-templated transcription 3367
                    regulation of DNA-templated transcription 3214
                      regulation of ncRNA transcription 102
                        negative regulation of ncRNA transcription associated with protein coding gene TSS/TES 0
                        regulation of antisense RNA transcription + 0
                        regulation of lncRNA transcription + 2
                        regulation of miRNA transcription + 80
                        regulation of piRNA transcription + 1
                        regulation of snRNA transcription by RNA polymerase II + 5
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
paths to the root