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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription elongation-coupled chromatin remodeling
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Accession:GO:0140673 term browser browse the term
Definition:A chromatin remodeling process that reestablishes the chromatin structure following the passage of RNA polymerase II during transcription elongation, thus preventing cryptic transcription initiation.
Comment:Note: Do not confuse with 'GO:0045815 transcriptional initiation-coupled chromatin remodeling', which describes the maintenance of chromatin in an open conformation, allowing the transcriptional machinery to access the DNA.
Synonyms:exact_synonym: co-transcriptional chromatin reassembly;   euchromatin maintenance during transcription elongation;   maintainance of chromatin integrity during transcription elongation by RNAPII;   maintenance of transcriptionally active chromatin during transcription elongation;   transciptional elongation-coupled chromatin remodeling;   transcriptional elongation-coupled chromatin remodeling
 related_synonym: DNA replication-independent chromatin organization;   chromatin maintenance during transcription elongation


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transcription elongation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:55,615,271...55,619,493
Ensembl chr 9:55,615,827...55,620,236 		JBrowse link
G EPOP elongin BC and polycomb repressive complex 2 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:23,549,088...23,552,433
Ensembl chr 9:23,549,615...23,550,754 		JBrowse link
G GLYR1 glyoxylate reductase 1 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,582,438...36,618,265
Ensembl chr 6:36,582,461...36,616,206 		JBrowse link
G IWS1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,081,625...23,122,618
Ensembl chr19:23,082,096...23,122,618 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353 		JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176 		JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447 		JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487 		JBrowse link
G USP15 ubiquitin specific peptidase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,510,759...5,634,954
Ensembl chr10:5,510,022...5,634,202 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in ISO (MGI:5822935|PMID:27863226) UniProt PMID:27863226 MGI:5822935 NCBI chr 6:33,277,328...33,315,601
Ensembl chr 6:33,277,444...33,314,491 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      biosynthetic process 7879
        cellular biosynthetic process 7461
          macromolecule biosynthetic process 6940
            RNA biosynthetic process 3226
              DNA-templated transcription elongation 102
                transcription elongation by RNA polymerase II 86
                  transcription elongation-coupled chromatin remodeling 10
Path 2
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      organic substance metabolic process 10554
        organic cyclic compound metabolic process 5907
          nucleobase-containing compound metabolic process 5439
            nucleic acid metabolic process 4871
              nucleic acid biosynthetic process 3350
                RNA biosynthetic process 3226
                  DNA-templated transcription 3200
                    transcription by RNA polymerase II 2518
                      transcription elongation by RNA polymerase II 86
                        transcription elongation-coupled chromatin remodeling 10
paths to the root