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ONTOLOGY REPORT - ANNOTATIONS

Term:ATP-dependent chromatin remodeler activity
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Accession:GO:0140658 term browser browse the term
Definition:An activity, driven by ATP hydrolysis, that modulates the contacts between histones and DNA, resulting in a change in chromosome architecture within the nucleosomal array, leading to chromatin remodeling.
Synonyms:exact_synonym: ATP hydrolysis-dependent chromatin remodeler activity;   ATP-dependent chromatin remodeller activity;   ATPase-dependent chromatin remodeler activity
 related_synonym: ATP-dependent chromatin remodelling;   nucleosome-activated ATPase activity;   nucleosome-dependent ATPase activity
 alt_id: GO:0070615


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ATP-dependent chromatin remodeler activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A enables ISO (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:151,192,014...151,265,386 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader enables ISO
IEA 		(PMID:15640247)
GO_REF:0000107 		RGD
Ensembl		 PMID:15640247 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:155,562,727...155,666,741 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:65,334,905...65,402,270
Ensembl chr 1:65,335,218...65,401,280 		JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like enables ISO
IEA 		(PMID:34486521)
GO_REF:0000107
(PMID:29220652), (PMID:29220653), (PMID:33357431), (PMID:34210977) 		RGD
Ensembl		 PMID:29220652 PMID:29220653 PMID:33357431 PMID:34210977 PMID:34486521 GO_REF:0000107 NCBI chr 2:187,819,869...187,906,359
Ensembl chr 2:187,811,954...187,890,477 		JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:136,597,993...136,726,874
Ensembl chr 1:136,599,900...136,710,335 		JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 enables ISO
IEA
IBA 		(PMID:28977666), (PMID:30397230)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28977666 PMID:30397230 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,562,437...54,588,842
Ensembl chr10:54,562,437...54,588,810 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 enables ISO
IBA
IEA 		(PMID:28977666)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:28977666 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:159,584,623...159,617,867
Ensembl chr 4:159,584,654...159,617,866 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:168,130,851...168,181,705
Ensembl chr 5:168,130,575...168,179,441 		JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:170,016,204...170,177,480
Ensembl chr 3:170,016,204...170,177,558 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:26,609,407...26,792,734 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 enables ISO
ISS
IEA
IBA 		(PMID:18378692)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:18378692 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr15:27,379,285...27,438,959
Ensembl chr15:27,379,285...27,417,851 		JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit enables ISO (PMID:11752216) RGD PMID:11752216 NCBI chr 3:188,506,802...188,535,558
Ensembl chr 3:188,501,209...188,535,105 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor enables IBA
ISO
IEA 		GO_REF:0000033
(PMID:29203878), (PMID:9565609)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:9565609 PMID:29203878 GO_REF:0000033 GO_REF:0000107 NCBI chr16:7,771,311...7,841,895
Ensembl chr16:7,771,581...7,841,895 		JBrowse link
G Hells helicase, lymphoid specific enables IEA
ISO 		GO_REF:0000107
(PMID:22946062) 		Ensembl
RGD		 PMID:22946062 GO_REF:0000107 NCBI chr 1:246,113,580...246,159,230
Ensembl chr 1:246,114,096...246,159,228 		JBrowse link
G Hltf helicase-like transcription factor enables ISO (PMID:1994885) RGD PMID:1994885 NCBI chr 2:104,478,725...104,538,531
Ensembl chr 2:104,478,772...104,538,818 		JBrowse link
G Ino80 INO80 complex ATPase subunit enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:126,822,280...126,919,532
Ensembl chr 3:126,822,280...126,919,532 		JBrowse link
G Morc2 MORC family CW-type zinc finger 2 enables ISO (PMID:23260667) RGD PMID:23260667 NCBI chr14:82,752,444...82,794,980
Ensembl chr14:82,752,018...82,794,979 		JBrowse link
G Rad54l2 RAD54 like 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:116,203,655...116,305,723
Ensembl chr 8:116,203,655...116,305,849 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 contributes_to
enables 		ISO (PMID:15640247) RGD PMID:15640247 NCBI chr  X:131,858,148...131,944,639
Ensembl chr  X:131,859,088...131,944,282 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 enables IEA
ISO 		GO_REF:0000107
(PMID:34910916) 		Ensembl
RGD		 PMID:34910916 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:28,443,810...28,535,070 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables ISO
IEA 		(PMID:15543136), (PMID:23911928)
GO_REF:0000107 		RGD
Ensembl		 PMID:15543136 PMID:23911928 GO_REF:0000107 NCBI chr19:44,172,465...44,208,967
Ensembl chr19:44,175,733...44,208,957 		JBrowse link
G Smarcad1 SNF2 related chromatin remodeling ATPase with DExD box 1 enables ISO
IEA
ISS 		(PMID:22960744)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:22960744 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:95,639,722...95,709,055
Ensembl chr 4:95,641,295...95,702,414 		JBrowse link
G Srcap Snf2-related CREBBP activator protein contributes_to
enables 		ISO (PMID:16634648)
(PMID:17617668) 		RGD PMID:16634648 PMID:17617668 NCBI chr 1:191,554,043...191,607,096
Ensembl chr 1:191,554,043...191,604,265 		JBrowse link
ATP-dependent histone chaperone activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myd88 MYD88, innate immune signal transduction adaptor enables IEA
ISO 		GO_REF:0000107
MGI:2385681 (PMID:18319258) 		Ensembl
RGD		 PMID:18319258 GO_REF:0000107 NCBI chr 8:127,952,161...127,956,230
Ensembl chr 8:127,952,161...127,956,230 		JBrowse link
G Smarcad1 SNF2 related chromatin remodeling ATPase with DExD box 1 enables ISO (PMID:39424143) RGD PMID:39424143 NCBI chr 4:95,639,722...95,709,055
Ensembl chr 4:95,641,295...95,702,414 		JBrowse link
histone octamer slider activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsf1 remodeling and spacing factor 1 enables ISO
IEA 		(PMID:9836642)
GO_REF:0000107 		RGD
Ensembl		 PMID:9836642 GO_REF:0000107 NCBI chr 1:161,303,596...161,426,326
Ensembl chr 1:161,303,660...161,420,290 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables ISO
IEA 		(PMID:9836642)
GO_REF:0000107 		RGD
Ensembl		 PMID:9836642 GO_REF:0000107 NCBI chr19:44,172,465...44,208,967
Ensembl chr19:44,175,733...44,208,957 		JBrowse link
nucleosome array spacer activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:131,858,148...131,944,639
Ensembl chr  X:131,859,088...131,944,282 		JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:233,617,277...233,784,908
Ensembl chr 1:233,617,366...233,784,869 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:28,443,810...28,535,070 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:44,172,465...44,208,967
Ensembl chr19:44,175,733...44,208,957 		JBrowse link
G Smarcad1 SNF2 related chromatin remodeling ATPase with DExD box 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:95,639,722...95,709,055
Ensembl chr 4:95,641,295...95,702,414 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19971
    ATP-dependent activity 617
      ATP-dependent activity, acting on DNA 121
        ATP-dependent chromatin remodeler activity 26
          ATP-dependent histone chaperone activity + 2
          histone octamer slider activity + 6
Path 2
Term Annotations click to browse term
  molecular_function 19971
    catalytic activity 5918
      catalytic activity, acting on a nucleic acid 681
        catalytic activity, acting on DNA 265
          ATP-dependent activity, acting on DNA 121
            ATP-dependent chromatin remodeler activity 26
              ATP-dependent histone chaperone activity + 2
              histone octamer slider activity + 6
paths to the root