ONTOLOGY REPORT - ANNOTATIONS
Term: histone reader activity
Accession: GO:0140566
browse the term
Definition: A chromatin adaptor activity that brings together a protein and a specific form of histone, either modified by a post-translational modification, or the unmodified form. Histone readers have roles in many processes, including in centromere function or in modulating the accessibility of cis-regulatory regions to the transcription machinery.
Synonyms: exact_synonym: histone reader
broad_synonym: epigenetic reader
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Atad2b
ATPase family, AAA domain containing 2B
enables
ISO IEA
(PMID:22464331) GO_REF:0000107
RGD Ensembl
PMID:22464331
GO_REF:0000107
NCBI chr 6:33,646,075...33,789,532
Ensembl chr 6:33,646,075...33,789,532
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Brd1
bromodomain containing 1
enables
IEA ISO
GO_REF:0000107 (PMID:21753189)
Ensembl RGD
PMID:21753189
GO_REF:0000107
NCBI chr 7:121,653,859...121,701,700
Ensembl chr 7:121,653,859...121,701,700
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Brd3
bromodomain containing 3
enables
ISO IEA
(PMID:22464331), (PMID:32895492) GO_REF:0000107
RGD Ensembl
PMID:22464331 PMID:32895492
GO_REF:0000107
NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
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Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
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Brd9
bromodomain containing 9
enables
ISO IEA
(PMID:22464331) GO_REF:0000107
RGD Ensembl
PMID:22464331
GO_REF:0000107
NCBI chr 1:31,158,546...31,185,812
Ensembl chr 1:31,158,546...31,186,125
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Cbx5
chromobox 5
enables
IEA ISO
GO_REF:0000107 PR:000045397 (PMID:16127177)
Ensembl RGD
PMID:16127177
GO_REF:0000107
NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118
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Chd1l
chromodomain helicase DNA binding protein 1-like
enables
ISO IEA
(PMID:34874266) GO_REF:0000107
RGD Ensembl
PMID:34874266
GO_REF:0000107
NCBI chr 2:187,819,869...187,906,359
Ensembl chr 2:187,811,954...187,890,477
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Hdgfl2
HDGF like 2
enables
ISO
(PMID:26721387)
RGD
PMID:26721387
NCBI chr 9:996,687...1,016,352
Ensembl chr 9:996,758...1,016,735
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Mdc1
mediator of DNA damage checkpoint 1
enables
ISS ISO
GO_REF:0000024 (PMID:16377563), (PMID:30898438)
UniProt RGD
PMID:16377563 PMID:30898438
GO_REF:0000024
NCBI chr20:2,898,496...2,914,960
Ensembl chr20:2,900,308...2,914,960
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Mecp2
methyl CpG binding protein 2
enables
IEA ISO
GO_REF:0000107 MGI:2183727 (PMID:17108082), (PMID:18511691)
Ensembl RGD
PMID:17108082 PMID:18511691
GO_REF:0000107
NCBI chr X:156,932,481...156,995,981
Ensembl chr X:156,941,234...156,943,560
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Msl3
MSL complex subunit 3
enables
ISO IEA
(PMID:20657587) GO_REF:0000107
RGD Ensembl
PMID:20657587
GO_REF:0000107
NCBI chr X:29,210,388...29,228,060
Ensembl chr X:29,210,427...29,228,054
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Phip
pleckstrin homology domain interacting protein
enables
ISO IEA
(PMID:22464331) GO_REF:0000107
RGD Ensembl
PMID:22464331
GO_REF:0000107
NCBI chr 8:92,656,890...92,771,098
Ensembl chr 8:92,656,890...92,771,021
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Pih1d1
PIH1 domain containing 1
enables
ISO IEA
(PMID:22368283) GO_REF:0000107
RGD Ensembl
PMID:22368283
GO_REF:0000107
NCBI chr 1:104,774,562...104,781,757
Ensembl chr 1:104,776,082...104,781,756
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Spin1
spindlin 1
enables
ISO ISS
(PMID:33574238) GO_REF:0000024 (PMID:39294378)
RGD UniProt
PMID:33574238 PMID:39294378
GO_REF:0000024
NCBI chr17:14,207,384...14,257,330
Ensembl chr17:14,207,384...14,257,190
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Stk38
serine/threonine kinase 38
enables
ISO IEA
(PMID:32537488) GO_REF:0000107
RGD Ensembl
PMID:32537488
GO_REF:0000107
NCBI chr20:7,035,923...7,070,657
Ensembl chr20:7,035,933...7,069,711
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Taf1
TATA-box binding protein associated factor 1
contributes_to
ISO
(PMID:24927529)
RGD
PMID:24927529
NCBI chr X:70,680,901...70,756,535
Ensembl chr X:70,680,906...70,756,735
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Thap7
THAP domain containing 7
enables
ISO IEA
(PMID:15561719), (PMID:16195249) GO_REF:0000107
RGD Ensembl
PMID:15561719 PMID:16195249
GO_REF:0000107
NCBI chr11:96,986,720...96,990,375
Ensembl chr11:96,987,275...96,990,371
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Tonsl
tonsoku-like, DNA repair protein
enables
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:26527279), (PMID:27338793), (PMID:29478807)
UniProt Ensembl RGD
PMID:26527279 PMID:27338793 PMID:29478807
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:110,226,696...110,241,459
Ensembl chr 7:110,225,525...110,241,397
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Tp53bp1
tumor protein p53 binding protein 1
enables
ISO IEA
(PMID:23760478), (PMID:27153538) GO_REF:0000107
RGD Ensembl
PMID:23760478 PMID:27153538
GO_REF:0000107
NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:128,620,322...128,696,747
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Yeats2
YEATS domain containing 2
enables
ISO IEA
(PMID:27103431) GO_REF:0000107
RGD Ensembl
PMID:27103431
GO_REF:0000107
NCBI chr11:94,247,538...94,333,652
Ensembl chr11:94,247,538...94,333,292
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Zcwpw1
zinc finger CW-type and PWWP domain containing 1
enables
ISO
(PMID:32374261)
RGD
PMID:32374261
NCBI chr12:24,517,428...24,547,942
Ensembl chr12:24,516,574...24,548,630
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L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
enables
ISO
(PMID:19144645)
RGD
PMID:19144645
NCBI chr 3:172,014,774...172,053,181
Ensembl chr 3:172,021,416...172,053,181
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Cbx1
chromobox 1
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr10:82,266,746...82,286,431
Ensembl chr10:82,266,759...82,287,242
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Cbx3
chromobox 3
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr 4:81,876,155...81,889,912
Ensembl chr 4:81,876,649...81,889,911
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Cbx5
chromobox 5
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118
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L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
enables
ISO
(PMID:17540172)
RGD
PMID:17540172
NCBI chr 3:172,014,774...172,053,181
Ensembl chr 3:172,021,416...172,053,181
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Cbx1
chromobox 1
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr10:82,266,746...82,286,431
Ensembl chr10:82,266,759...82,287,242
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Cbx3
chromobox 3
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr 4:81,876,155...81,889,912
Ensembl chr 4:81,876,649...81,889,911
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Cbx5
chromobox 5
enables
ISO
(PMID:16127177)
RGD
PMID:16127177
NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118
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L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
enables
ISO
(PMID:17540172)
RGD
PMID:17540172
NCBI chr 3:172,014,774...172,053,181
Ensembl chr 3:172,021,416...172,053,181
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Fmr1
fragile X messenger ribonucleoprotein 1
enables
ISS ISO IEA
GO_REF:0000024 (PMID:24813610) GO_REF:0000107
UniProt RGD Ensembl
PMID:24813610
GO_REF:0000024 GO_REF:0000107
NCBI chr X:152,284,857...152,322,686
Ensembl chr X:152,284,841...152,322,675
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Tdrd3
tudor domain containing 3
enables
ISS ISO IEA
GO_REF:0000024 (PMID:21172665) GO_REF:0000107
UniProt RGD Ensembl
PMID:21172665
GO_REF:0000024 GO_REF:0000107
NCBI chr15:69,748,754...69,911,605
Ensembl chr15:69,749,217...69,884,656
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Uhrf1
ubiquitin-like with PHD and ring finger domains 1
enables
ISO
(PMID:26065575)
RGD
PMID:26065575
NCBI chr 9:1,220,162...1,241,792
Ensembl chr 9:1,222,063...1,241,792
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Zmynd11
zinc finger, MYND-type containing 11
enables
IEA
GO_REF:0000117
UniProt
GO_REF:0000117
NCBI chr17:65,226,907...65,323,278
Ensembl chr17:65,234,045...65,323,276
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Zmynd8
zinc finger, MYND-type containing 8
enables
IEA
GO_REF:0000117
UniProt
GO_REF:0000117
NCBI chr 3:174,948,162...175,061,382
Ensembl chr 3:174,948,537...175,061,571
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Brd2
bromodomain containing 2
enables
IEA ISO
GO_REF:0000107 (PMID:18406326)
Ensembl RGD
PMID:18406326
GO_REF:0000107
NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,951...4,737,290
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Brd7
bromodomain containing 7
enables
ISO IEA
(PMID:16265664) GO_REF:0000107
RGD Ensembl
PMID:16265664
GO_REF:0000107
NCBI chr19:34,882,238...34,910,944
Ensembl chr19:34,882,304...34,910,944
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Dpf2
double PHD fingers 2
enables
ISO
(PMID:28533407)
RGD
PMID:28533407
NCBI chr 1:212,612,986...212,628,376
Ensembl chr 1:212,612,986...212,628,289
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Setdb1
SET domain bifurcated histone lysine methyltransferase 1
enables
ISO
(PMID:29234025)
RGD
PMID:29234025
NCBI chr 2:185,587,722...185,619,084
Ensembl chr 2:185,587,722...185,618,982
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Zmynd8
zinc finger, MYND-type containing 8
enables
ISO IEA
(PMID:27477906) GO_REF:0000107
RGD Ensembl
PMID:27477906
GO_REF:0000107
NCBI chr 3:174,948,162...175,061,382
Ensembl chr 3:174,948,537...175,061,571
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Dnmt1
DNA methyltransferase 1
enables
ISS ISO
GO_REF:0000024 (PMID:29053958)
UniProt RGD
PMID:29053958
GO_REF:0000024
NCBI chr 8:27,716,797...27,763,405
Ensembl chr 8:27,716,797...27,763,119
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Mllt3
MLLT3, super elongation complex subunit
enables
ISO IEA
(PMID:25417107) GO_REF:0000107
RGD Ensembl
PMID:25417107
GO_REF:0000107
NCBI chr 5:107,305,008...107,561,352
Ensembl chr 5:107,284,766...107,561,352
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Yeats4
YEATS domain containing 4
enables
ISO IEA
(PMID:30071723) GO_REF:0000107
RGD Ensembl
PMID:30071723
GO_REF:0000107
NCBI chr 7:54,744,220...54,751,361
Ensembl chr 7:54,744,221...54,751,361
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Brd3
bromodomain containing 3
enables
IEA ISO
GO_REF:0000107 (PMID:27105114)
Ensembl RGD
PMID:27105114
GO_REF:0000107
NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
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Dnmt1
DNA methyltransferase 1
enables
ISS ISO
GO_REF:0000024 (PMID:26065575), (PMID:29053958) (PMID:29053958)
UniProt RGD
PMID:26065575 PMID:29053958
GO_REF:0000024
NCBI chr 8:27,716,797...27,763,405
Ensembl chr 8:27,716,797...27,763,119
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Trim24
tripartite motif-containing 24
enables
ISO IEA
(PMID:21164480) GO_REF:0000107
RGD Ensembl
PMID:21164480
GO_REF:0000107
NCBI chr 4:67,534,240...67,659,014
Ensembl chr 4:67,534,335...67,684,226
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Dnmt1
DNA methyltransferase 1
enables
ISO
(PMID:29053958)
RGD
PMID:29053958
NCBI chr 8:27,716,797...27,763,405
Ensembl chr 8:27,716,797...27,763,119
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Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197) (PMID:23728299)
RGD
PMID:23728299 PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
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Mllt3
MLLT3, super elongation complex subunit
enables
ISO IEA
(PMID:25417107) GO_REF:0000107
RGD Ensembl
PMID:25417107
GO_REF:0000107
NCBI chr 5:107,305,008...107,561,352
Ensembl chr 5:107,284,766...107,561,352
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Yeats4
YEATS domain containing 4
enables
ISO IEA
(PMID:30071723) GO_REF:0000107
RGD Ensembl
PMID:30071723
GO_REF:0000107
NCBI chr 7:54,744,220...54,751,361
Ensembl chr 7:54,744,221...54,751,361
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Brd3
bromodomain containing 3
enables
ISO IEA
(PMID:27105114) GO_REF:0000107
RGD Ensembl
PMID:27105114
GO_REF:0000107
NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
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Cbx4
chromobox 4
enables
ISO
(PMID:29539416)
RGD
PMID:29539416
NCBI chr10:104,835,685...104,841,727
Ensembl chr10:104,835,685...104,841,727
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Cbx8
chromobox 8
enables
IEA ISO
GO_REF:0000107 (PMID:21029866)
Ensembl RGD
PMID:21029866
GO_REF:0000107
NCBI chr10:104,793,062...104,795,500
Ensembl chr10:104,793,062...104,795,500
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Cdyl2
chromodomain Y-like 2
enables
IEA ISO
GO_REF:0000107 (PMID:18450745)
Ensembl RGD
PMID:18450745
GO_REF:0000107
NCBI chr19:61,500,702...61,691,746
Ensembl chr19:61,500,702...61,691,746
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Chd5
chromodomain helicase DNA binding protein 5
enables
ISS ISO IEA
GO_REF:0000024 (PMID:23948251) GO_REF:0000107
UniProt RGD Ensembl
PMID:23948251
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:168,130,851...168,181,705
Ensembl chr 5:168,130,575...168,179,441
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H1f2
H1.2 linker histone, cluster member
enables
ISO
(PMID:26581166)
RGD
PMID:26581166
NCBI chr17:41,818,962...41,820,453
Ensembl chr17:41,779,051...41,822,317
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Hdgfl2
HDGF like 2
enables
ISO IBA ISS
(PMID:26721387) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:26721387
GO_REF:0000024 GO_REF:0000033
NCBI chr 9:996,687...1,016,352
Ensembl chr 9:996,758...1,016,735
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Lrwd1
leucine-rich repeats and WD repeat domain containing 1
enables
IEA ISO
GO_REF:0000107 (PMID:21029866)
Ensembl RGD
PMID:21029866
GO_REF:0000107
NCBI chr12:26,166,648...26,179,689
Ensembl chr12:26,166,648...26,185,200
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Slc25a2
solute carrier family 25 member 2
contributes_to
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr18:29,704,182...29,707,563
Ensembl chr18:29,703,871...29,708,827
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Taf1
TATA-box binding protein associated factor 1
contributes_to
ISO
UniProtKB:Q15545 (PMID:24927529)
RGD
PMID:24927529
NCBI chr X:70,680,901...70,756,535
Ensembl chr X:70,680,906...70,756,735
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Taf7
TATA-box binding protein associated factor 7
contributes_to
ISO
UniProtKB:P21675 (PMID:24927529)
RGD
PMID:24927529
NCBI chr18:29,704,182...29,713,382
Ensembl chr18:29,705,920...29,712,712
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Msh6
mutS homolog 6
enables
IEA ISO
GO_REF:0000107 (PMID:23622243)
Ensembl RGD
PMID:23622243
GO_REF:0000107
NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:12,316,198...12,333,844
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Mtf2
metal response element binding transcription factor 2
enables
ISO
(PMID:23104054)
RGD
PMID:23104054
NCBI chr14:1,784,218...1,828,463
Ensembl chr14:1,783,627...1,828,414
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Phf1
PHD finger protein 1
enables
ISO IEA
(PMID:23142980), (PMID:23273982) (PMID:23104054) GO_REF:0000117
RGD UniProt
PMID:23104054 PMID:23142980 PMID:23273982
GO_REF:0000117
NCBI chr20:5,019,650...5,024,732
Ensembl chr20:5,019,673...5,024,731
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Phf19
PHD finger protein 19
enables
IEA ISO
GO_REF:0000107 (PMID:23104054) GO_REF:0000117 (PMID:23104054), (PMID:23160351), (PMID:23273982)
Ensembl RGD UniProt
PMID:23104054 PMID:23160351 PMID:23273982
GO_REF:0000107 GO_REF:0000117
NCBI chr 3:38,572,766...38,604,950
Ensembl chr 3:38,572,766...38,593,854
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Pwwp2a
PWWP domain containing 2A
enables
ISO IEA
(PMID:30327463) GO_REF:0000107
RGD Ensembl
PMID:30327463
GO_REF:0000107
NCBI chr10:28,654,272...28,696,693
Ensembl chr10:28,656,994...28,696,693
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Sgf29
SAGA complex associated factor 29
enables
ISS ISO
GO_REF:0000024 (PMID:20850016)
UniProt RGD
PMID:20850016
GO_REF:0000024
NCBI chr 1:190,668,803...190,702,500
Ensembl chr 1:190,669,028...190,717,906
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Zcwpw1
zinc finger CW-type and PWWP domain containing 1
enables
ISO
(PMID:32352380)
RGD
PMID:32352380
NCBI chr12:24,517,428...24,547,942
Ensembl chr12:24,516,574...24,548,630
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Zmynd11
zinc finger, MYND-type containing 11
enables
ISO IEA
(PMID:24675531) (PMID:24590075) GO_REF:0000117 GO_REF:0000107
RGD UniProt Ensembl
PMID:24590075 PMID:24675531
GO_REF:0000107 GO_REF:0000117
NCBI chr17:65,226,907...65,323,278
Ensembl chr17:65,234,045...65,323,276
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Wdr5
WD repeat domain 5
enables
ISS ISO
GO_REF:0000024 (PMID:18840606)
UniProt RGD
PMID:18840606
GO_REF:0000024
NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:31,235,222...31,254,727
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Zmynd8
zinc finger, MYND-type containing 8
enables
ISO IEA
(PMID:27477906) GO_REF:0000107
RGD Ensembl
PMID:27477906
GO_REF:0000107
NCBI chr 3:174,948,162...175,061,382
Ensembl chr 3:174,948,537...175,061,571
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Chd1
chromodomain helicase DNA binding protein 1
enables
ISO
(PMID:21029866)
RGD
PMID:21029866
NCBI chr 1:65,334,905...65,402,270
Ensembl chr 1:65,335,218...65,401,280
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Chd8
chromodomain helicase DNA binding protein 8
enables
ISS ISO IEA
GO_REF:0000024 (PMID:17938208) GO_REF:0000107
UniProt RGD Ensembl
PMID:17938208
GO_REF:0000024 GO_REF:0000107
NCBI chr15:27,379,285...27,438,959
Ensembl chr15:27,379,285...27,417,851
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Cxxc1
CXXC finger protein 1
enables
IEA ISO
GO_REF:0000107 (PMID:30365547)
Ensembl RGD
PMID:30365547
GO_REF:0000107
NCBI chr18:70,088,407...70,093,786
Ensembl chr18:70,088,460...70,093,778
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Ing1
inhibitor of growth family, member 1
enables
ISO
(PMID:16728974)
RGD
PMID:16728974
NCBI chr16:84,639,378...84,649,498
Ensembl chr16:84,639,381...84,647,616
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Ing2
inhibitor of growth family, member 2
enables
ISO
(PMID:16728974)
RGD
PMID:16728974
NCBI chr16:51,305,311...51,316,177
Ensembl chr16:51,307,466...51,316,177
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Ing3
inhibitor of growth family, member 3
enables
IEA ISO
GO_REF:0000107 (PMID:16728974), (PMID:19154204)
Ensembl RGD
PMID:16728974 PMID:19154204
GO_REF:0000107
NCBI chr 4:51,439,218...51,469,502
Ensembl chr 4:51,443,763...51,470,951
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Ing4
inhibitor of growth family, member 4
enables
IEA ISO
GO_REF:0000107 (PMID:16728974)
Ensembl RGD
PMID:16728974
GO_REF:0000107
NCBI chr 4:159,528,183...159,536,762
Ensembl chr 4:159,528,189...159,536,761
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Ing5
inhibitor of growth family, member 5
enables
IEA ISO
GO_REF:0000107 (PMID:16728974)
Ensembl RGD
PMID:16728974
GO_REF:0000107
NCBI chr 9:101,772,845...101,793,734
Ensembl chr 9:101,773,724...101,793,728
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Kmt2e
lysine methyltransferase 2E
enables
ISO IEA
(PMID:23798402), (PMID:24130829) GO_REF:0000107
RGD Ensembl
PMID:23798402 PMID:24130829
GO_REF:0000107
NCBI chr 4:12,550,570...12,655,329
Ensembl chr 4:12,550,570...12,619,721
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Morc3
MORC family CW-type zinc finger 3
enables
ISO IEA
(PMID:26933034) GO_REF:0000107
RGD Ensembl
PMID:26933034
GO_REF:0000107
NCBI chr11:46,621,575...46,664,315
Ensembl chr11:46,621,548...46,664,309
G
Morc4
MORC family CW-type zinc finger 4
enables
ISO
(PMID:26933034)
RGD
PMID:26933034
NCBI chr X:108,269,197...108,317,611
Ensembl chr X:108,269,383...108,317,553
G
Phf1
PHD finger protein 1
enables
ISO
(PMID:23142980)
RGD
PMID:23142980
NCBI chr20:5,019,650...5,024,732
Ensembl chr20:5,019,673...5,024,731
G
Phf19
PHD finger protein 19
enables
IEA ISO
GO_REF:0000107 (PMID:23104054)
Ensembl RGD
PMID:23104054
GO_REF:0000107
NCBI chr 3:38,572,766...38,604,950
Ensembl chr 3:38,572,766...38,593,854
G
Phf2
PHD finger protein 2
enables
IEA ISO
GO_REF:0000107 (PMID:20129925), (PMID:21167174)
Ensembl RGD
PMID:20129925 PMID:21167174
GO_REF:0000107
NCBI chr17:15,989,594...16,057,583
Ensembl chr17:15,981,604...16,057,583
G
Phf8
PHD finger protein 8
enables
IEA ISO
GO_REF:0000107 (PMID:20208542), (PMID:20346720), (PMID:20622854), (PMID:21029866)
Ensembl RGD
PMID:20208542 PMID:20346720 PMID:20622854 PMID:21029866
GO_REF:0000107
NCBI chr X:23,967,126...24,066,473
Ensembl chr X:23,967,556...24,066,471
G
Pygo1
pygopus family PHD finger 1
enables
IEA ISO
GO_REF:0000107 (PMID:18498752)
Ensembl RGD
PMID:18498752
GO_REF:0000107
NCBI chr 8:82,546,866...82,565,526
Ensembl chr 8:82,546,848...82,565,523
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Rag2
recombination activating 2
enables
IEA ISO
GO_REF:0000107 (PMID:18025461), (PMID:18033247)
Ensembl RGD
PMID:18025461 PMID:18033247
GO_REF:0000107
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:108,357,399...108,365,253
G
Sgf29
SAGA complex associated factor 29
enables
ISO
(PMID:26421618)
RGD
PMID:26421618
NCBI chr 1:190,668,803...190,702,500
Ensembl chr 1:190,669,028...190,717,906
G
Spin1
spindlin 1
enables
ISS ISO
GO_REF:0000024 (PMID:21029866), (PMID:21960006), (PMID:23077255), (PMID:24589551), (PMID:29061846)
UniProt RGD
PMID:21029866 PMID:21960006 PMID:23077255 PMID:24589551 PMID:29061846
GO_REF:0000024
NCBI chr17:14,207,384...14,257,330
Ensembl chr17:14,207,384...14,257,190
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Spin2a
spindlin family member 2A
enables
ISO
(PMID:29061846)
RGD
PMID:29061846
NCBI chr X:20,847,871...20,849,854
Ensembl chr X:20,847,708...20,850,383
G
Spin2b
spindlin family member 2B
enables
ISO
(PMID:29061846)
RGD
PMID:29061846
NCBI chr X:19,923,341...19,925,119
Ensembl chr X:19,842,295...19,925,734
G
Spin4
spindlin family, member 4
enables
ISO
(PMID:29061846)
RGD
PMID:29061846
NCBI chr X:63,898,338...63,902,427
Ensembl chr X:63,900,148...63,903,811
G
Taf3
TATA-box binding protein associated factor 3
enables
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr17:73,365,162...73,518,053
G
Zcwpw1
zinc finger CW-type and PWWP domain containing 1
enables
ISO
(PMID:20826339) (PMID:31453335), (PMID:32352380)
RGD
PMID:20826339 PMID:31453335 PMID:32352380
NCBI chr12:24,517,428...24,547,942
Ensembl chr12:24,516,574...24,548,630
G
Zcwpw2
zinc finger CW-type and PWWP domain containing 2
enables
ISO IEA
(PMID:26933034) GO_REF:0000107
RGD Ensembl
PMID:26933034
GO_REF:0000107
NCBI chr 8:126,506,855...126,651,270
Ensembl chr 8:126,541,597...126,658,945
G
Pou5f1
POU class 5 homeobox 1
enables
IEA ISO
GO_REF:0000107 (PMID:23798425)
Ensembl RGD
PMID:23798425
GO_REF:0000107
NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,227,837...3,232,598
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Il6
interleukin 6
IDA
RGD
PMID:30737481
RGD:598092506
NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,889,999...5,894,610
G
Mllt3
MLLT3, super elongation complex subunit
enables
ISO IEA
(PMID:25417107) GO_REF:0000107
RGD Ensembl
PMID:25417107
GO_REF:0000107
NCBI chr 5:107,305,008...107,561,352
Ensembl chr 5:107,284,766...107,561,352
G
Tnf
tumor necrosis factor
IDA
RGD
PMID:30737481
RGD:598092506
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,626,532...3,629,303
G
Brd3
bromodomain containing 3
enables
IEA ISO
GO_REF:0000107 (PMID:27105114)
Ensembl RGD
PMID:27105114
GO_REF:0000107
NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
G
Atrx
ATRX, chromatin remodeler
enables
IEA ISO
GO_REF:0000107 (PMID:21421568)
Ensembl RGD
PMID:21421568
GO_REF:0000107
NCBI chr X:74,916,548...75,062,880
Ensembl chr X:74,916,548...75,062,880
G
Brd3
bromodomain containing 3
enables
IEA ISO
GO_REF:0000107 (PMID:32895492)
Ensembl RGD
PMID:32895492
GO_REF:0000107
NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
G
Cbx1
chromobox 1
enables
ISO
(PMID:11242053)
RGD
PMID:11242053
NCBI chr10:82,266,746...82,286,431
Ensembl chr10:82,266,759...82,287,242
G
Cbx2
chromobox 2
enables
IEA ISO
GO_REF:0000107 (PMID:16537902)
Ensembl RGD
PMID:16537902
GO_REF:0000107
NCBI chr10:104,777,054...104,785,922
Ensembl chr10:104,777,056...104,785,926
G
Cbx3
chromobox 3
enables
ISO
(PMID:11242053)
RGD
PMID:11242053
NCBI chr 4:81,876,155...81,889,912
Ensembl chr 4:81,876,649...81,889,911
G
Cbx5
chromobox 5
enables
IEA ISO
GO_REF:0000107 (PMID:16537902) (PMID:11242053), (PMID:19783980), (PMID:21029866), (PMID:40440427)
Ensembl RGD
PMID:11242053 PMID:16537902 PMID:19783980 PMID:21029866 PMID:40440427
GO_REF:0000107
NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118
G
Cbx7
chromobox 7
enables
ISO
(PMID:16537902)
RGD
PMID:16537902
NCBI chr 7:113,341,030...113,358,716
Ensembl chr 7:113,341,030...113,358,346
G
Cdyl2
chromodomain Y-like 2
enables
IEA ISO
GO_REF:0000107 (PMID:18450745)
Ensembl RGD
PMID:18450745
GO_REF:0000107
NCBI chr19:61,500,702...61,691,746
Ensembl chr19:61,500,702...61,691,746
G
Dpf2
double PHD fingers 2
NOT|enables
ISO
(PMID:29429572)
RGD
PMID:29429572
NCBI chr 1:212,612,986...212,628,376
Ensembl chr 1:212,612,986...212,628,289
G
Dppa3
developmental pluripotency-associated 3
enables
ISS ISO
GO_REF:0000024 (PMID:22722204)
UniProt RGD
PMID:22722204
GO_REF:0000024
NCBI chr 4:157,523,426...157,526,810
Ensembl chr 5:93,143,318...93,144,472 Ensembl chr 4:93,143,318...93,144,472
G
Fgf2
fibroblast growth factor 2
IDA
RGD
PMID:27114539 PMID:25071177
RGD:405855871 , RGD:405866182
NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:122,164,454...122,224,493
G
Hdgfl2
HDGF like 2
enables
ISO IBA ISS
(PMID:26721387) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:26721387
GO_REF:0000024 GO_REF:0000033
NCBI chr 9:996,687...1,016,352
Ensembl chr 9:996,758...1,016,735
G
Hltf
helicase-like transcription factor
enables
ISO
(PMID:40680746)
RGD
PMID:40680746
NCBI chr 2:104,478,725...104,538,531
Ensembl chr 2:104,478,772...104,538,818
G
LOC134486429
developmental pluripotency-associated protein 3
enables
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 3:126,923,594...126,936,136
G
Mphosph8
M-phase phosphoprotein 8
enables
ISS ISO
GO_REF:0000024 (PMID:20871592), (PMID:39638237)
UniProt RGD
PMID:20871592 PMID:39638237
GO_REF:0000024
NCBI chr15:34,916,169...34,944,038
Ensembl chr15:34,816,701...34,944,433
G
Phf13
PHD finger protein 13
enables
ISO
(PMID:23034801)
RGD
PMID:23034801
NCBI chr 5:167,777,303...167,784,077
Ensembl chr 5:167,777,302...167,783,963
G
Setdb1
SET domain bifurcated histone lysine methyltransferase 1
enables
ISO
(PMID:29234025)
RGD
PMID:29234025
NCBI chr 2:185,587,722...185,619,084
Ensembl chr 2:185,587,722...185,618,982
G
Suz12
SUZ12 polycomb repressive complex 2 subunit
enables
ISO
(PMID:21029866)
RGD
PMID:21029866
NCBI chr10:65,464,948...65,510,846
Ensembl chr10:65,464,969...65,510,846
G
Tnrc18
trinucleotide repeat containing 18
enables
ISO IEA
(PMID:37938770) GO_REF:0000107
RGD Ensembl
PMID:37938770
GO_REF:0000107
NCBI chr12:16,868,930...16,965,224
Ensembl chr12:16,868,978...16,965,217
G
Uhrf1
ubiquitin-like with PHD and ring finger domains 1
enables
ISS ISO IEA
GO_REF:0000024 (PMID:21489993) (PMID:17967883), (PMID:21029866), (PMID:21489993), (PMID:23022729), (PMID:30104358) GO_REF:0000107
UniProt RGD Ensembl
PMID:17967883 PMID:21029866 PMID:21489993 PMID:23022729 PMID:30104358
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:1,220,162...1,241,792
Ensembl chr 9:1,222,063...1,241,792
G
Wdr5
WD repeat domain 5
enables
ISO
(PMID:16600877)
RGD
PMID:16600877
NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:31,235,222...31,254,727
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:20871596), (PMID:23086925), (PMID:23317504), (PMID:29176719)
RGD
PMID:20871596 PMID:23086925 PMID:23317504 PMID:29176719
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Brdt
bromodomain testis associated
enables
IEA ISO
GO_REF:0000107 (PMID:12861021), (PMID:19794495), (PMID:22922464)
Ensembl RGD
PMID:12861021 PMID:19794495 PMID:22922464
GO_REF:0000107
NCBI chr14:2,532,275...2,590,780
Ensembl chr14:2,532,275...2,590,760
G
Tdrd3
tudor domain containing 3
enables
IEA ISO
GO_REF:0000107 (PMID:21172665)
Ensembl RGD
PMID:21172665
GO_REF:0000107
NCBI chr15:69,748,754...69,911,605
Ensembl chr15:69,749,217...69,884,656
G
Thap7
THAP domain containing 7
enables
ISO IEA
(PMID:15561719) GO_REF:0000107
RGD Ensembl
PMID:15561719
GO_REF:0000107
NCBI chr11:96,986,720...96,990,375
Ensembl chr11:96,987,275...96,990,371
G
Brd2
bromodomain containing 2
enables
IEA ISO
GO_REF:0000107 (PMID:14731392) (PMID:17848202), (PMID:18406326), (PMID:20048151), (PMID:20709061)
Ensembl RGD
PMID:14731392 PMID:17848202 PMID:18406326 PMID:20048151 PMID:20709061
GO_REF:0000107
NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,951...4,737,290
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Baz2a
bromodomain adjacent to zinc finger domain, 2A
enables
ISO
(PMID:16085498)
RGD
PMID:16085498
NCBI chr 7:1,107,377...1,145,507
Ensembl chr 7:1,107,796...1,145,507
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Dpf2
double PHD fingers 2
enables
ISO
(PMID:28533407)
RGD
PMID:28533407
NCBI chr 1:212,612,986...212,628,376
Ensembl chr 1:212,612,986...212,628,289
G
Msl3
MSL complex subunit 3
enables
IEA ISO
GO_REF:0000107 (PMID:20657587)
Ensembl RGD
PMID:20657587
GO_REF:0000107
NCBI chr X:29,210,388...29,228,060
Ensembl chr X:29,210,427...29,228,054
G
Taf1
TATA-box binding protein associated factor 1
enables
ISO
(PMID:17996705)
RGD
PMID:17996705
NCBI chr X:70,680,901...70,756,535
Ensembl chr X:70,680,906...70,756,735
G
L3mbtl2
L3MBTL histone methyl-lysine binding protein 2
enables
ISO
(PMID:19233876)
RGD
PMID:19233876
NCBI chr 7:115,066,427...115,087,625
Ensembl chr 7:115,066,486...115,087,598
G
Mbtd1
mbt domain containing 1
enables
ISO IEA
(PMID:19841675), (PMID:32209463) GO_REF:0000107
RGD Ensembl
PMID:19841675 PMID:32209463
GO_REF:0000107
NCBI chr10:79,336,041...79,392,315
Ensembl chr10:79,335,235...79,392,315
G
Ncapd3
non-SMC condensin II complex, subunit D3
enables
ISO IEA
(PMID:20622854) GO_REF:0000107
RGD Ensembl
PMID:20622854
GO_REF:0000107
NCBI chr 8:33,696,214...33,765,520
Ensembl chr 8:33,696,270...33,765,518
G
Ncapg2
non-SMC condensin II complex, subunit G2
enables
ISO
(PMID:20622854)
RGD
PMID:20622854
NCBI chr 6:143,484,651...143,561,850
Ensembl chr 6:143,485,944...143,560,249
G
Kdm4a
lysine demethylase 4A
enables
ISO
(PMID:22373579)
RGD
PMID:22373579
NCBI chr 5:136,958,178...137,004,942
Ensembl chr 5:136,958,178...137,004,951
G
L3mbtl1
L3MBTL histone methyl-lysine binding protein 1
enables
ISS ISO
GO_REF:0000024 UniProtKB:P10412|UniProtKB:P62805|UniProtKB:Q13185 (PMID:17540172), (PMID:18408754), (PMID:22120668)
UniProt RGD
PMID:17540172 PMID:18408754 PMID:22120668
GO_REF:0000024
NCBI chr 3:172,014,774...172,053,181
Ensembl chr 3:172,021,416...172,053,181
G
L3mbtl2
L3MBTL histone methyl-lysine binding protein 2
enables
ISS ISO
GO_REF:0000024 (PMID:19233876)
UniProt RGD
PMID:19233876
GO_REF:0000024
NCBI chr 7:115,066,427...115,087,625
Ensembl chr 7:115,066,486...115,087,598
G
Mbtd1
mbt domain containing 1
enables
IEA ISO
GO_REF:0000107 (PMID:19841675), (PMID:27153538), (PMID:32209463)
Ensembl RGD
PMID:19841675 PMID:27153538 PMID:32209463
GO_REF:0000107
NCBI chr10:79,336,041...79,392,315
Ensembl chr10:79,335,235...79,392,315
G
Tp53bp1
tumor protein p53 binding protein 1
enables
IEA ISO
GO_REF:0000107 (PMID:23209566) GO_REF:0000117 (PMID:22373579), (PMID:23760478), (PMID:27153538), (PMID:28241136)
Ensembl RGD UniProt
PMID:22373579 PMID:23209566 PMID:23760478 PMID:27153538 PMID:28241136
GO_REF:0000107 GO_REF:0000117
NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:128,620,322...128,696,747
G
Ttll12
tubulin tyrosine ligase like 12
enables
IEA ISO
GO_REF:0000107 (PMID:23251473)
Ensembl RGD
PMID:23251473
GO_REF:0000107
NCBI chr 7:116,612,609...116,631,244
Ensembl chr 7:116,612,609...116,631,577
G
Pwp1
PWP1 homolog, endonuclein
enables
ISO
(PMID:25335925)
RGD
PMID:25335925
NCBI chr 7:19,870,465...19,886,463
Ensembl chr 7:19,866,927...19,886,463
G
Brd2
bromodomain containing 2
enables
IEA ISO ISS
GO_REF:0000107 (PMID:18406326), (PMID:20709061) GO_REF:0000024
Ensembl RGD UniProt
PMID:18406326 PMID:20709061
GO_REF:0000024 GO_REF:0000107
NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,951...4,737,290
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Brd4
bromodomain containing 4
enables
ISO
(PMID:29379197)
RGD
PMID:29379197
NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
G
Ccdc38
coiled-coil domain containing 38
enables
ISO
(PMID:27278724)
RGD
PMID:27278724
NCBI chr 7:29,943,046...30,017,512
Ensembl chr 7:29,946,783...30,017,504
G
Dnajc2
DnaJ heat shock protein family (Hsp40) member C2
enables
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:21179169)
UniProt Ensembl RGD
PMID:21179169
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:14,162,490...14,189,662
Ensembl chr 4:14,163,838...14,192,846
G
Jarid2
jumonji and AT-rich interaction domain containing 2
enables
ISO
MGI:5888989 (PMID:27892467)
RGD
PMID:27892467
NCBI chr17:19,983,217...20,163,598
Ensembl chr17:19,983,217...20,161,970
G
Rnf169
ring finger protein 169
enables
ISO
(PMID:22492721)
RGD
PMID:22492721
NCBI chr 1:163,662,582...163,724,154
Ensembl chr 1:163,666,592...163,723,897
G
Tp53bp1
tumor protein p53 binding protein 1
enables
ISO IEA
(PMID:22492721), (PMID:23760478), (PMID:27153538), (PMID:32209463) GO_REF:0000107
RGD Ensembl
PMID:22492721 PMID:23760478 PMID:27153538 PMID:32209463
GO_REF:0000107
NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:128,620,322...128,696,747
G
Uimc1
ubiquitin interaction motif containing 1
enables
IEA ISO
GO_REF:0000107 (PMID:22492721)
Ensembl RGD
PMID:22492721
GO_REF:0000107
NCBI chr17:9,528,923...9,597,967
Ensembl chr17:9,528,950...9,597,963
G
Usp15
ubiquitin specific peptidase 15
enables
ISO IEA
(PMID:24526689) GO_REF:0000107
RGD Ensembl
PMID:24526689
GO_REF:0000107
NCBI chr 7:60,643,611...60,805,137
Ensembl chr 7:60,643,613...60,734,099
G
Brd1
bromodomain containing 1
enables
IEA ISO
GO_REF:0000107 (PMID:21880731)
Ensembl RGD
PMID:21880731
GO_REF:0000107
NCBI chr 7:121,653,859...121,701,700
Ensembl chr 7:121,653,859...121,701,700
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all