Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:modification-dependent protein binding
go back to main search page
Accession:GO:0140030 term browser browse the term
Definition:Binding to a protein upon post-translation modification of the target protein.
Comment:This term should only be used when the binding is shown to require a post-translational modification: the interaction needs to be tested with and without the PTM. The binding does not need to be at the site of the modification. It may be that the PTM causes a conformational change that allows binding of the protein to another region; this type of modification-dependent protein binding is valid for annotation to this term.
Synonyms:related_synonym: modified protein binding


show annotations for term's descendants           Sort by:
modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspd1 heat shock protein family D (Hsp60) member 1 IPI RGD PMID:9811814 RGD:2298706 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit enables ISO (PMID:27105114), (PMID:27545619) RGD PMID:27105114 PMID:27545619 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Yeats2 YEATS domain containing 2 enables ISO (PMID:27103431) RGD PMID:27103431 NCBI chr11:80,743,134...80,829,253
Ensembl chr11:80,743,134...80,829,208 		JBrowse link
G Yeats4 YEATS domain containing 4 enables ISO (PMID:30071723) RGD PMID:30071723 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635 		JBrowse link
acetylation-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd2 bromodomain containing 2 enables ISO (PMID:28262505)
(MGI:6106706|PMID:28262505)		 RGD PMID:28262505 MGI:6106706 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Ep300 E1A binding protein p300 enables ISO (PMID:18782771) RGD PMID:18782771 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
ADP-D-ribose modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor enables ISO (PMID:18172500) RGD PMID:18172500 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISS
ISO		 GO_REF:0000024
(PMID:28991266)		 UniProt
RGD		 PMID:28991266 GO_REF:0000024 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 enables ISO (PMID:34102106) RGD PMID:34102106 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
H3K27me3 modified histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 enables ISS
ISO
IEA		 GO_REF:0000024
(MGI:5532595|PMID:23948251)
GO_REF:0000107
(PMID:23948251)		 UniProt
RGD
Ensembl		 PMID:23948251 GO_REF:0000024 GO_REF:0000107 MGI:5532595 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291 		JBrowse link
G Hdgfl2 HDGF like 2 enables ISO
IEA
IBA
ISS		 (PMID:26721387)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:26721387 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 contributes_to ISO UniProtKB:Q15545 (PMID:24927529) RGD PMID:24927529 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 contributes_to ISO UniProtKB:P21675 (PMID:24927529) RGD PMID:24927529 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
H3K9me3 modified histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpf2 double PHD fingers 2 enables ISO (PMID:29429572) RGD PMID:29429572 NCBI chr 1:203,183,674...203,199,037
Ensembl chr 1:203,183,686...203,198,983 		JBrowse link
G Hdgfl2 HDGF like 2 enables ISO
IEA
IBA
ISS		 (PMID:26721387)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:26721387 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186 		JBrowse link
G Kdm4c lysine demethylase 4C enables ISO (PMID:17277772) RGD PMID:17277772 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
H4K20me3 modified histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pwp1 PWP1 homolog, endonuclein enables ISO (PMID:25335925) RGD PMID:25335925 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731 		JBrowse link
G Ttll12 tubulin tyrosine ligase like 12 enables ISO (PMID:23251473) RGD PMID:23251473 NCBI chr 7:114,731,890...114,751,237
Ensembl chr 7:114,731,892...114,751,356 		JBrowse link
K11-linked polyubiquitin modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mindy2 MINDY lysine 48 deubiquitinase 2 enables ISO (PMID:28082312) RGD PMID:28082312 NCBI chr 8:71,268,274...71,327,698
Ensembl chr 8:71,256,447...71,328,453 		JBrowse link
K48-linked polyubiquitin modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000069696 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:11,225,135...11,226,004 JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon enables ISO UniProtKB:Q9C030 (PMID:24882218)
(MGI:5645191|PMID:24882218)		 RGD PMID:24882218 MGI:5645191 NCBI chr13:42,712,154...42,738,470
Ensembl chr13:42,712,159...42,737,143 		JBrowse link
G Mindy1 MINDY lysine 48 deubiquitinase 1 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:28082312)		 UniProt
RGD		 PMID:28082312 GO_REF:0000024 GO_REF:0000104 NCBI chr 2:182,859,977...182,873,000
Ensembl chr 2:182,860,472...182,873,015 		JBrowse link
G Mindy2 MINDY lysine 48 deubiquitinase 2 enables ISO (PMID:28082312) RGD PMID:28082312 NCBI chr 8:71,268,274...71,327,698
Ensembl chr 8:71,256,447...71,328,453 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor contributes_to IDA PMID:12847084 ParkinsonsUK-UCL PMID:12847084 RGD:10047330 NCBI chr10:105,654,395...105,709,958
Ensembl chr10:105,654,812...105,709,913 		JBrowse link
G Rnf31 ring finger protein 31 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,083,047...29,095,328
Ensembl chr15:29,083,631...29,101,915 		JBrowse link
G Ubqln4 ubiquilin 4 enables ISO (PMID:29666234) RGD PMID:29666234 NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059 		JBrowse link
G Ubxn1 UBX domain protein 1 enables ISO
IBA
IEA		 (PMID:21135095)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:21135095 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:205,765,309...205,769,234
Ensembl chr 1:205,745,120...205,816,520 		JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 enables ISO
IEA		 (MGI:5634892|PMID:12847084)
GO_REF:0000107		 RGD
Ensembl		 PMID:12847084 GO_REF:0000107 MGI:5634892 NCBI chr11:82,161,618...82,185,107
Ensembl chr11:82,161,619...82,185,087 		JBrowse link
G Vcp valosin-containing protein enables ISO (MGI:5634892|PMID:12847084)
(PMID:37816088)		 RGD PMID:12847084 PMID:37816088 MGI:5634892 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Zfand2b zinc finger AN1-type containing 2B enables ISO (PMID:26876100)
(MGI:6154515|PMID:26876100)		 RGD PMID:26876100 MGI:6154515 NCBI chr 9:76,665,466...76,668,447
Ensembl chr 9:76,665,546...76,668,445 		JBrowse link
K6-linked polyubiquitin modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mindy2 MINDY lysine 48 deubiquitinase 2 enables ISO (PMID:28082312) RGD PMID:28082312 NCBI chr 8:71,268,274...71,327,698
Ensembl chr 8:71,256,447...71,328,453 		JBrowse link
G Ubxn1 UBX domain protein 1 enables ISS
ISO		 GO_REF:0000024
(PMID:20351172)		 UniProt
RGD		 PMID:20351172 GO_REF:0000024 NCBI chr 1:205,765,309...205,769,234
Ensembl chr 1:205,745,120...205,816,520 		JBrowse link
K63-linked polyubiquitin modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc2 activating signal cointegrator 1 complex subunit 2 enables ISO (PMID:36302773) RGD PMID:36302773 NCBI chr14:79,503,449...79,547,801
Ensembl chr14:79,503,517...79,545,494 		JBrowse link
G Atrip ATR interacting protein enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:109,708,440...109,722,511
Ensembl chr 8:109,708,440...109,722,477 		JBrowse link
G Faap20 FA core complex associated protein 20 enables ISO
IBA
IEA
ISS		 (PMID:22343915), (PMID:22705371)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:22343915 PMID:22705371 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:165,808,370...165,815,291
Ensembl chr 5:165,808,657...165,815,333 		JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon NOT|enables ISO (PMID:24882218) RGD PMID:24882218 NCBI chr13:42,712,154...42,738,470
Ensembl chr13:42,712,159...42,737,143 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma enables ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:17702576)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002
(PMID:18287044)		 UniProt
RGD
TreeGrafter
GO_Central
InterPro		 PMID:17702576 PMID:18287044 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:152,216,485...152,241,476
Ensembl chr  X:152,216,596...152,239,499 		JBrowse link
G Mindy2 MINDY lysine 48 deubiquitinase 2 enables ISO (PMID:28082312) RGD PMID:28082312 NCBI chr 8:71,268,274...71,327,698
Ensembl chr 8:71,256,447...71,328,453 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor contributes_to IDA PMID:12847084 ParkinsonsUK-UCL PMID:12847084 RGD:10047330 NCBI chr10:105,654,395...105,709,958
Ensembl chr10:105,654,812...105,709,913 		JBrowse link
G Optn optineurin enables IEA
ISO
IBA		 GO_REF:0000107
(PMID:17702576)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002		 Ensembl
RGD
TreeGrafter
GO_Central
InterPro		 PMID:17702576 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Otud7a OTU deubiquitinase 7A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:117,064,428...117,388,217
Ensembl chr 1:117,064,496...117,386,480 		JBrowse link
G Otud7b OTU deubiquitinase 7B enables ISO
IBA		 (MGI:5447608|PMID:18281465)
GO_REF:0000033		 RGD
GO_Central		 PMID:18281465 GO_REF:0000033 MGI:5447608 NCBI chr 2:183,661,955...183,722,584
Ensembl chr 2:183,662,163...183,718,674 		JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 enables ISO (PMID:23575687) RGD PMID:23575687 NCBI chr 7:107,949,031...107,958,377
Ensembl chr 7:107,949,043...107,958,304 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 enables ISO (PMID:20595234) RGD PMID:20595234 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Rnf168 ring finger protein 168 enables ISO
IEA
ISS		 (PMID:19500350), (PMID:21041483), (PMID:22742833)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19500350 PMID:21041483 PMID:22742833 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf169 ring finger protein 169 enables ISO (PMID:22492721), (PMID:22733822), (PMID:22742833) RGD PMID:22492721 PMID:22733822 PMID:22742833 NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653 		JBrowse link
G Rnf31 ring finger protein 31 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,083,047...29,095,328
Ensembl chr15:29,083,631...29,101,915 		JBrowse link
G Sprtn SprT-like N-terminal domain enables ISO
IEA
ISS		 (PMID:22681887), (PMID:23042605)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:22681887 PMID:23042605 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,857,612...52,864,864
Ensembl chr19:52,857,866...52,864,864 		JBrowse link
G Sqstm1 sequestosome 1 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:28404643), (PMID:29343546), (PMID:36221902)
(MGI:3610521|PMID:16252010)		 UniProt
GO_Central
TreeGrafter
RGD		 PMID:16252010 PMID:28404643 PMID:29343546 PMID:36221902 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:3610521 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
G Tab2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:15327770), (PMID:19935683), (PMID:22158122)		 UniProt
GO_Central
RGD		 PMID:15327770 PMID:19935683 PMID:22158122 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:2,375,026...2,425,115
Ensembl chr 1:2,375,490...2,424,756 		JBrowse link
G Tab3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 enables ISO (PMID:15327770), (PMID:22158122) RGD PMID:15327770 PMID:22158122 NCBI chr  X:49,972,414...50,044,658
Ensembl chr  X:49,972,330...50,042,056 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282 		JBrowse link
G Tnip2 TNFAIP3 interacting protein 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:76,228,350...76,245,553
Ensembl chr14:76,228,371...76,275,265 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002
GO_REF:0000107
(PMID:17525341), (PMID:17525342), (PMID:19261749), (PMID:22742833)		 UniProt
GO_Central
TreeGrafter
InterPro
Ensembl
RGD		 PMID:17525341 PMID:17525342 PMID:19261749 PMID:22742833 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:9,523,793...9,592,810
Ensembl chr17:9,527,794...9,592,799 		JBrowse link
G Wdr81 WD repeat domain 81 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28404643)		 UniProt
Ensembl
RGD		 PMID:28404643 GO_REF:0000024 GO_REF:0000107 NCBI chr10:60,281,969...60,295,374
Ensembl chr10:60,281,972...60,295,296 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 enables ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996 		JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 enables ISO
IBA		 (PMID:18281465)
GO_REF:0000033		 RGD
GO_Central		 PMID:18281465 GO_REF:0000033 NCBI chr 1:187,725,354...187,780,129
Ensembl chr 1:187,724,320...187,779,655 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 enables ISO (PMID:22704558), (PMID:22705370), (PMID:22759634) RGD PMID:22704558 PMID:22705370 PMID:22759634 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670 		JBrowse link
lysine-acetylated histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad2b ATPase family, AAA domain containing 2B enables ISO (PMID:22464331) RGD PMID:22464331 NCBI chr 6:27,914,546...28,070,103
Ensembl chr 6:27,912,862...28,067,047 		JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A enables ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Brd2 bromodomain containing 2 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(MGI:7565889|PMID:14731392)
(PMID:17848202), (PMID:18406326), (PMID:20048151), (PMID:20709061), (PMID:35410381)		 UniProt
GO_Central
TreeGrafter
RGD		 PMID:14731392 PMID:17848202 PMID:18406326 PMID:20048151 PMID:20709061 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:7565889 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Brd3 bromodomain containing 3 enables ISO
IBA		 (PMID:22464331), (PMID:27105114), (PMID:32895492)
GO_REF:0000033		 RGD
GO_Central		 PMID:22464331 PMID:27105114 PMID:32895492 GO_REF:0000033 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Brd4 bromodomain containing 4 enables ISO
IBA		 (PMID:23728299)
GO_REF:0000033
(PMID:20871596), (PMID:23086925), (PMID:23317504), (PMID:29176719)		 RGD
GO_Central		 PMID:20871596 PMID:23086925 PMID:23317504 PMID:23728299 PMID:29176719 GO_REF:0000033 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Brd7 bromodomain containing 7 enables ISO
IBA		 (PMID:16265664)
GO_REF:0000033		 RGD
GO_Central		 PMID:16265664 GO_REF:0000033 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494 		JBrowse link
G Brd9 bromodomain containing 9 enables ISO
IBA		 (PMID:22464331)
GO_REF:0000033		 RGD
GO_Central		 PMID:22464331 GO_REF:0000033 NCBI chr 1:29,329,981...29,357,285
Ensembl chr 1:29,329,985...29,357,016 		JBrowse link
G Brdt bromodomain testis associated enables ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(MGI:5447877|PMID:22922464)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:22922464 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5447877 NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 enables ISS
ISO		 GO_REF:0000024
(MGI:4887326|PMID:17882261)		 UniProt
RGD		 PMID:17882261 GO_REF:0000024 MGI:4887326 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Dpf2 double PHD fingers 2 enables ISO (PMID:28533407), (PMID:29429572) RGD PMID:28533407 PMID:29429572 NCBI chr 1:203,183,674...203,199,037
Ensembl chr 1:203,183,686...203,198,983 		JBrowse link
G Kmt2a lysine methyltransferase 2A enables ISO (PMID:19187761) RGD PMID:19187761 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Mllt1 MLLT1, super elongation complex subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:1,731,077...1,775,985
Ensembl chr 9:1,731,080...1,775,970 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit enables ISO
IBA		 (PMID:25417107)
GO_REF:0000033		 RGD
GO_Central		 PMID:25417107 GO_REF:0000033 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Nanog Nanog homeobox enables ISO (PMID:23798425) RGD PMID:23798425 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Phip pleckstrin homology domain interacting protein enables ISO (PMID:22464331) RGD PMID:22464331 NCBI chr 8:83,776,802...83,891,192
Ensembl chr 8:83,781,465...83,894,283 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 enables ISO (PMID:23798425) RGD PMID:23798425 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Psme4 proteasome activator subunit 4 enables ISO
IBA		 (MGI:5494329|PMID:23706739)
GO_REF:0000033		 RGD
GO_Central		 PMID:23706739 GO_REF:0000033 MGI:5494329 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408 		JBrowse link
G Sirt1 sirtuin 1 enables ISO (PMID:15469825) RGD PMID:15469825 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 enables ISO
IEA		 (PMID:17582821)
GO_REF:0000107		 RGD
Ensembl		 PMID:17582821 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 enables ISO (PMID:17996705) RGD PMID:17996705 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Thap7 THAP domain containing 7 enables ISO (PMID:15561719) RGD PMID:15561719 NCBI chr11:83,482,958...83,486,136
Ensembl chr11:83,483,037...83,486,436 		JBrowse link
G Trim24 tripartite motif-containing 24 enables ISO (PMID:21164480) RGD PMID:21164480 NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241 		JBrowse link
G Yeats4 YEATS domain containing 4 enables ISO (PMID:30071723) RGD PMID:30071723 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 enables ISO (PMID:27477906) RGD PMID:27477906 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
G Zzef1 zinc finger ZZ-type and EF-hand domain containing 1 enables ISO (PMID:33227311) RGD PMID:33227311 NCBI chr10:57,413,265...57,550,888
Ensembl chr10:57,411,149...57,549,568 		JBrowse link
G Zzz3 zinc finger, ZZ-type containing 3 enables ISO (PMID:30217978) RGD PMID:30217978 NCBI chr 2:241,330,366...241,397,308
Ensembl chr 2:241,331,022...241,397,307 		JBrowse link
methylated histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Atrx ATRX, chromatin remodeler enables ISO
IEA		 (PMID:21421568)
GO_REF:0000118
GO_REF:0000107		 RGD
TreeGrafter
Ensembl		 PMID:21421568 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Bptf bromodomain PHD finger transcription factor enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Cbx1 chromobox 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096 		JBrowse link
G Cbx2 chromobox 2 enables ISO
IBA		 (MGI:3619779|PMID:16537902)
GO_REF:0000033		 RGD
GO_Central		 PMID:16537902 GO_REF:0000033 MGI:3619779 NCBI chr10:104,278,517...104,287,384
Ensembl chr10:104,278,549...104,287,383 		JBrowse link
G Cbx3 chromobox 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283 		JBrowse link
G Cbx3l1 chromobox 3 like 1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:29,186,833...29,188,609
Ensembl chr16:29,188,184...29,188,562 		JBrowse link
G Cbx3l2 chromobox 3 like 2 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:68,280,558...68,281,429
Ensembl chr 5:68,280,970...68,281,345 		JBrowse link
G Cbx4 chromobox 4 enables ISO (MGI:3619779|PMID:16537902) RGD PMID:16537902 MGI:3619779 NCBI chr10:104,337,140...104,343,210
Ensembl chr10:104,336,876...104,356,706 		JBrowse link
G Cbx5 chromobox 5 enables ISO
IBA		 (PMID:19783980), (PMID:21029866)
PR:000045397 (PMID:16127177)
GO_REF:0000033		 RGD
GO_Central		 PMID:16127177 PMID:19783980 PMID:21029866 GO_REF:0000033 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022 		JBrowse link
G Cbx6 chromobox 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091 		JBrowse link
G Cbx7 chromobox 7 enables ISO (MGI:3619779|PMID:16537902) RGD PMID:16537902 MGI:3619779 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Cbx8 chromobox 8 enables ISO
IBA		 (PMID:21029866)
GO_REF:0000033		 RGD
GO_Central		 PMID:21029866 GO_REF:0000033 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024 		JBrowse link
G Cdyl chromodomain Y-like enables
NOT|enables		 ISO
IEA
ISS		 (PMID:22009739)
GO_REF:0000107
(PMID:18450745)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:18450745 PMID:22009739 GO_REF:0000024 GO_REF:0000107 NCBI chr17:28,982,009...29,204,345
Ensembl chr17:28,982,037...29,204,313 		JBrowse link
G Cdyl2 chromodomain Y-like 2 enables ISO (PMID:18450745) RGD PMID:18450745 NCBI chr19:44,591,734...44,783,258
Ensembl chr19:44,597,459...44,783,022 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 enables ISO (PMID:21029866), (PMID:28866611) RGD PMID:21029866 PMID:28866611 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125 		JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 enables ISO
IEA
ISS		 (PMID:17938208)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17938208 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285 		JBrowse link
G Cxxc1 CXXC finger protein 1 enables ISO
IBA		 (MGI:6258144|PMID:30365547)
GO_REF:0000033		 RGD
GO_Central		 PMID:30365547 GO_REF:0000033 MGI:6258144 NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551 		JBrowse link
G Dppa3 developmental pluripotency-associated 3 enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(MGI:5432962|PMID:22722204)		 UniProt
GO_Central
RGD		 PMID:22722204 GO_REF:0000024 GO_REF:0000033 MGI:5432962 NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861
Ensembl chr 5:155,815,296...155,854,861 		JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:56,421,609...56,422,277
Ensembl chr 8:56,421,825...56,422,277 		JBrowse link
G ENSRNOG00000062582 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,049,283...4,049,627 JBrowse link
G ENSRNOG00000063908 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,061,472...4,061,816 JBrowse link
G ENSRNOG00000064620 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,076,883...4,077,227 JBrowse link
G ENSRNOG00000065050 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,044,374...4,044,718 JBrowse link
G ENSRNOG00000065763 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 9:106,123,592...106,136,682 JBrowse link
G ENSRNOG00000066373 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,071,312...4,071,656 JBrowse link
G ENSRNOG00000066843 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:1,100,887...1,101,231 JBrowse link
G ENSRNOG00000067676 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  Y:5,988,290...5,991,848 JBrowse link
G ENSRNOG00000067882 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:703,314...1,142,818 JBrowse link
G ENSRNOG00000068853 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:1,105,792...1,106,136 JBrowse link
G ENSRNOG00000069126 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,056,633...4,056,977 JBrowse link
G ENSRNOG00000069155 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,066,397...4,066,741 JBrowse link
G ENSRNOG00000070313 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,046,834...4,047,178 JBrowse link
G ENSRNOG00000070579 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:134,673,026...134,673,431 JBrowse link
G ENSRNOG00000070778 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,059,073...4,059,417 JBrowse link
G ENSRNOG00000070934 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:4,051,729...4,052,073 JBrowse link
G ENSRNOG00000071056 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr12:1,098,437...1,098,781 JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
ISO		 GO_REF:0000024
(PMID:24813610)		 UniProt
RGD		 PMID:24813610 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog enables ISO
IBA
IEA
ISS		 (PMID:20850016)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
Ensembl
UniProt		 PMID:20850016 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G Hdgfl2 HDGF like 2 enables ISO (PMID:32459350) RGD PMID:32459350 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186 		JBrowse link
G Ing1 inhibitor of growth family, member 1 enables ISO
IBA		 (PMID:16728974)
GO_REF:0000033		 RGD
GO_Central		 PMID:16728974 GO_REF:0000033 NCBI chr16:77,937,276...77,945,320
Ensembl chr16:77,937,279...77,946,264 		JBrowse link
G Ing2 inhibitor of growth family, member 2 enables ISO
IBA		 (PMID:16728974)
GO_REF:0000033		 RGD
GO_Central		 PMID:16728974 GO_REF:0000033 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482 		JBrowse link
G Ing3 inhibitor of growth family, member 3 enables ISO
IBA
IEA		 (PMID:16728974), (PMID:19154204)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:16728974 PMID:19154204 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715 		JBrowse link
G Ing4 inhibitor of growth family, member 4 enables ISO
IBA		 (PMID:16728974)
GO_REF:0000033		 RGD
GO_Central		 PMID:16728974 GO_REF:0000033 NCBI chr 4:157,841,882...157,850,519
Ensembl chr 4:157,841,951...157,850,265 		JBrowse link
G Ing5 inhibitor of growth family, member 5 enables ISO
IBA		 (PMID:16728974)
GO_REF:0000033		 RGD
GO_Central		 PMID:16728974 GO_REF:0000033 NCBI chr 9:94,326,549...94,343,392
Ensembl chr 9:94,326,548...94,344,220 		JBrowse link
G Jmjd7 jumonji domain containing 7 enables ISO (PMID:28847961) RGD PMID:28847961 NCBI chr 3:106,998,454...107,004,538
Ensembl chr 3:106,998,477...107,004,538 		JBrowse link
G Kdm4a lysine demethylase 4A enables ISO (PMID:22373579) RGD PMID:22373579 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501 		JBrowse link
G Kdm5a lysine demethylase 5A enables ISO (PMID:19430464) RGD PMID:19430464 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kdm7a lysine demethylase 7A enables ISO (PMID:20023638) RGD PMID:20023638 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998 		JBrowse link
G Kdm8 lysine demethylase 8 enables ISO
IEA		 (PMID:28847961)
GO_REF:0000107		 RGD
Ensembl		 PMID:28847961 GO_REF:0000107 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841 		JBrowse link
G Kmt2e lysine methyltransferase 2E enables ISO
IBA		 (PMID:23798402), (PMID:24130829)
GO_REF:0000033		 RGD
GO_Central		 PMID:23798402 PMID:24130829 GO_REF:0000033 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 enables ISS
ISO		 GO_REF:0000024
UniProtKB:P10412|UniProtKB:P62805|UniProtKB:Q13185 (PMID:17540172), (PMID:18408754), (PMID:19144645), (PMID:20622853), (PMID:22120668)		 UniProt
RGD		 PMID:17540172 PMID:18408754 PMID:19144645 PMID:20622853 PMID:22120668 GO_REF:0000024 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233 		JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 enables ISO
IBA
ISS		 (PMID:19233876)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:19233876 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:113,186,303...113,209,706
Ensembl chr 7:113,186,370...113,207,489 		JBrowse link
G LOC100910078 spindlin-2-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:1,529,052...1,592,677
Ensembl chr 3:1,529,712...1,534,661 		JBrowse link
G LOC103694730 Y-linked testis-specific protein 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC108353098 Y-linked testis-specific protein 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:1,492,386...1,534,596
Ensembl chr 3:1,492,357...1,494,821 		JBrowse link
G LOC120096627 developmental pluripotency-associated protein 3-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:69,456,777...69,460,079
Ensembl chr14:69,457,383...69,457,859 		JBrowse link
G LOC120096971 developmental pluripotency-associated protein 3-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:27,224,329...27,232,700
Ensembl chr15:27,225,434...27,225,910 		JBrowse link
G LOC120097510 spindlin-1-like enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:217,000...218,039 JBrowse link
G LOC120099686 Y-linked testis-specific protein 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC120100784 spindlin-1-like enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:104,591,976...104,592,840
Ensembl chr 2:104,591,786...104,592,794 		JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 enables ISO (PMID:21029866) RGD PMID:21029866 NCBI chr12:20,530,035...20,543,078
Ensembl chr12:20,530,012...20,549,536 		JBrowse link
G Mbtd1 mbt domain containing 1 enables ISO
IBA		 (PMID:19841675), (PMID:27153538), (PMID:32209463)
GO_REF:0000033		 RGD
GO_Central		 PMID:19841675 PMID:27153538 PMID:32209463 GO_REF:0000033 NCBI chr10:78,839,140...78,895,413
Ensembl chr10:78,839,036...78,893,720 		JBrowse link
G Morc3 MORC family CW-type zinc finger 3 enables ISO
IBA		 (PMID:26933034)
GO_REF:0000033		 RGD
GO_Central		 PMID:26933034 GO_REF:0000033 NCBI chr11:33,151,906...33,194,650
Ensembl chr11:33,152,025...33,194,646 		JBrowse link
G Morc4 MORC family CW-type zinc finger 4 enables ISO
IBA		 (PMID:26933034)
GO_REF:0000033		 RGD
GO_Central		 PMID:26933034 GO_REF:0000033 NCBI chr  X:103,477,366...103,529,026
Ensembl chr  X:103,480,603...103,528,956 		JBrowse link
G Mphosph8 M-phase phosphoprotein 8 enables ISO
IBA
ISS		 (PMID:20871592)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:20871592 GO_REF:0000024 GO_REF:0000033 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810 		JBrowse link
G Msh6 mutS homolog 6 enables ISO (PMID:23622243) RGD PMID:23622243 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956 		JBrowse link
G Msl3 MSL complex subunit 3 enables ISO (PMID:20657587) RGD PMID:20657587 NCBI chr  X:25,638,029...25,655,698
Ensembl chr  X:25,637,804...25,655,697 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 enables ISO
IBA		 (PMID:23142980)
GO_REF:0000033
(MGI:5487476|PMID:23104054)		 RGD
GO_Central		 PMID:23104054 PMID:23142980 GO_REF:0000033 MGI:5487476 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 enables ISO (PMID:20622854) RGD PMID:20622854 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 enables ISO (PMID:20622854) RGD PMID:20622854 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr14:76,833,179...76,911,304
Ensembl chr14:76,835,637...76,913,641 		JBrowse link
G Phf1 PHD finger protein 1 enables ISO
IBA		 (PMID:23142980), (PMID:23273982)
GO_REF:0000033
(MGI:5487476|PMID:23104054)		 RGD
GO_Central		 PMID:23104054 PMID:23142980 PMID:23273982 GO_REF:0000033 MGI:5487476 NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871 		JBrowse link
G Phf13 PHD finger protein 13 enables ISO (PMID:23034801) RGD PMID:23034801 NCBI chr 5:162,494,574...162,501,350
Ensembl chr 5:162,494,573...162,501,350 		JBrowse link
G Phf19 PHD finger protein 19 enables ISO
IBA		 (PMID:23104054), (PMID:23160351), (PMID:23273982)
GO_REF:0000033
(MGI:5487476|PMID:23104054)		 RGD
GO_Central		 PMID:23104054 PMID:23160351 PMID:23273982 GO_REF:0000033 MGI:5487476 NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405 		JBrowse link
G Phf2 PHD finger protein 2 enables ISO (PMID:20129925), (PMID:21167174) RGD PMID:20129925 PMID:21167174 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208 		JBrowse link
G Phf8 PHD finger protein 8 enables ISO (PMID:20023638), (PMID:20208542), (PMID:20346720), (PMID:20622853), (PMID:20622854), (PMID:21029866) RGD PMID:20023638 PMID:20208542 PMID:20346720 PMID:20622853 PMID:20622854 More... NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
G Pwwp2a PWWP domain containing 2A enables ISO (PMID:30228260), (PMID:30327463) RGD PMID:30228260 PMID:30327463 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308 		JBrowse link
G Pygo1 pygopus family PHD finger 1 enables ISO (PMID:18498752) RGD PMID:18498752 NCBI chr 8:73,666,210...73,684,873
Ensembl chr 8:73,665,593...73,684,869 		JBrowse link
G Rag2 recombination activating 2 enables ISO (MGI:4441252|PMID:18033247), (MGI:4441253|PMID:18025461) RGD PMID:18025461 PMID:18033247 MGI:4441252 MGI:4441253 NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066 		JBrowse link
G Rrp8 ribosomal RNA processing 8 enables ISO
IBA
IEA
ISS		 (PMID:18485871)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
Ensembl
UniProt		 PMID:18485871 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331 		JBrowse link
G Setd5 SET domain containing 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
G Sgf29 SAGA complex associated factor 29 enables ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:20850016), (PMID:26421618)		 UniProt
GO_Central
TreeGrafter
RGD		 PMID:20850016 PMID:26421618 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781 		JBrowse link
G Spin1 spindlin 1 enables ISO
IBA
IEA
ISS		 (PMID:21029866), (PMID:21960006), (PMID:23077255), (PMID:24589551), (PMID:29061846)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:21029866 PMID:21960006 PMID:23077255 PMID:24589551 PMID:29061846 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr17:14,055,685...14,105,366
Ensembl chr17:14,055,689...14,105,411 		JBrowse link
G Spin2a spindlin family member 2A enables ISO
IBA		 (PMID:29061846)
GO_REF:0000033		 RGD
GO_Central		 PMID:29061846 GO_REF:0000033 NCBI chr  X:17,511,018...17,513,001
Ensembl chr  X:17,511,022...17,513,001 		JBrowse link
G Spin2b spindlin family member 2B enables ISO
IBA		 (PMID:29061846)
GO_REF:0000033		 RGD
GO_Central		 PMID:29061846 GO_REF:0000033 NCBI chr  X:17,190,573...17,192,351
Ensembl chr  X:17,180,474...17,192,351 		JBrowse link
G Spin2bl1 spindlin family member 2B like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,118,840...17,133,137
Ensembl chr  X:17,118,816...17,129,381 		JBrowse link
G Spin4 spindlin family, member 4 enables ISO (PMID:29061846) RGD PMID:29061846 NCBI chr  X:59,888,728...59,892,817
Ensembl chr  X:59,891,581...59,892,330 		JBrowse link
G Ssty1-ps5 spermiogenesis specific transcript on the Y 1, pseudogene 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO (PMID:21029866) RGD PMID:21029866 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Tdrd3 tudor domain containing 3 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21172665)		 UniProt
Ensembl
RGD		 PMID:21172665 GO_REF:0000024 GO_REF:0000107 NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110 		JBrowse link
G Thap7 THAP domain containing 7 enables ISO (PMID:15561719) RGD PMID:15561719 NCBI chr11:83,482,958...83,486,136
Ensembl chr11:83,483,037...83,486,436 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 enables ISO (MGI:5887191|PMID:23209566)
(PMID:22373579), (PMID:23760478), (PMID:27153538), (PMID:28241136)		 RGD PMID:22373579 PMID:23209566 PMID:23760478 PMID:27153538 PMID:28241136 MGI:5887191 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Trim24 tripartite motif-containing 24 NOT|enables ISO (PMID:21164480) RGD PMID:21164480 NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241 		JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 enables ISO
IEA
ISS		 (PMID:17967883), (PMID:21029866), (PMID:21489993)
GO_REF:0000107
(MGI:5448517|PMID:21489993)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17967883 PMID:21029866 PMID:21489993 GO_REF:0000024 GO_REF:0000107 MGI:5448517 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631 		JBrowse link
G Wdr5 WD repeat domain 5 enables ISO
IEA
ISS		 (PMID:16600877), (PMID:18840606)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:16600877 PMID:18840606 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 enables ISO
IBA		 (PMID:20826339), (PMID:32744506)
GO_REF:0000033
(MGI:6358520|PMID:31453335), (MGI:6443266|PMID:32352380)		 RGD
GO_Central		 PMID:20826339 PMID:31453335 PMID:32352380 PMID:32744506 GO_REF:0000033 MGI:6358520 MGI:6443266 NCBI chr12:18,880,625...18,910,713
Ensembl chr12:18,880,633...18,910,711 		JBrowse link
G Zcwpw2 zinc finger CW-type and PWWP domain containing 2 enables ISO
IBA		 (PMID:26933034)
GO_REF:0000033		 RGD
GO_Central		 PMID:26933034 GO_REF:0000033 NCBI chr 8:117,628,838...117,773,096
Ensembl chr 8:117,681,238...117,773,739 		JBrowse link
G Zmynd11 zinc finger, MYND-type containing 11 enables ISO
IBA		 (PMID:24675531)
GO_REF:0000033
(MGI:5560379|PMID:24590075)		 RGD
GO_Central		 PMID:24590075 PMID:24675531 GO_REF:0000033 MGI:5560379 NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 enables ISO (PMID:27477906) RGD PMID:27477906 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
G Zzef1 zinc finger ZZ-type and EF-hand domain containing 1 enables ISO (PMID:33227311) RGD PMID:33227311 NCBI chr10:57,413,265...57,550,888
Ensembl chr10:57,411,149...57,549,568 		JBrowse link
G Zzz3 zinc finger, ZZ-type containing 3 enables ISO (PMID:30217978) RGD PMID:30217978 NCBI chr 2:241,330,366...241,397,308
Ensembl chr 2:241,331,022...241,397,307 		JBrowse link
methylation-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 enables ISO UniProtKB:P26358 (PMID:29691401) RGD PMID:29691401 NCBI chr 1:18,988,763...19,089,247
Ensembl chr 1:18,990,618...19,089,263 		JBrowse link
G Phf20l1 PHD finger protein 20-like 1 enables ISO
IEA		 UniProtKB:P26358|UniProtKB:P48431 (PMID:24492612), (PMID:29358331)
GO_REF:0000117		 RGD
UniProt		 PMID:24492612 PMID:29358331 GO_REF:0000117 NCBI chr 7:98,330,580...98,396,526
Ensembl chr 7:98,330,580...98,396,526 		JBrowse link
G Sgf29 SAGA complex associated factor 29 enables ISS
ISO		 GO_REF:0000024
(PMID:35210392)		 UniProt
RGD		 PMID:35210392 GO_REF:0000024 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781 		JBrowse link
phosphorylated histone binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thap7 THAP domain containing 7 enables ISO (PMID:15561719) RGD PMID:15561719 NCBI chr11:83,482,958...83,486,136
Ensembl chr11:83,483,037...83,486,436 		JBrowse link
phosphorylation-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank2 ankyrin 2 enables ISO UniProtKB:B3KU38|UniProtKB:P0DPB3 (PMID:25950943) RGD PMID:25950943 NCBI chr 2:215,378,028...215,954,015
Ensembl chr 2:215,379,680...215,862,923 		JBrowse link
G Ank3 ankyrin 3 enables IPI PMID:25950943 UniProt PMID:25950943 PMID:25950943 RGD:13800538, RGD:13800538 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300 		JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase enables ISO UniProtKB:Q8NDB2 (PMID:11782428) RGD PMID:11782428 NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868 		JBrowse link
G Nbn nibrin enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:18411307), (PMID:18582474), (PMID:18583988), (PMID:18678890), (PMID:19804756), (PMID:24534091), (PMID:27814491), (PMID:30787182)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:18411307 PMID:18582474 PMID:18583988 PMID:18678890 PMID:19804756 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150 		JBrowse link
G Plcg2 phospholipase C, gamma 2 enables IEA
ISO		 GO_REF:0000107
UniProtKB:Q9QZE2 (MGI:2179131|PMID:10744659)		 Ensembl
RGD		 PMID:10744659 GO_REF:0000107 MGI:2179131 NCBI chr19:45,547,416...45,683,930
Ensembl chr19:45,547,416...45,683,930 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 enables ISO
IEA		 UniProtKB:Q96LA5|UniProtKB:Q96LC7 (PMID:11162587), (PMID:12163025)
GO_REF:0000107		 RGD
Ensembl		 PMID:11162587 PMID:12163025 GO_REF:0000107 NCBI chr 4:157,526,034...157,550,783
Ensembl chr 4:157,526,035...157,550,984 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 enables ISO (PMID:17575048), (PMID:20545769), (PMID:21482717), (PMID:21777809), (PMID:23891287), (PMID:26811421), (PMID:30898438), (PMID:31135337), (PMID:35597237), (PMID:37674080) RGD PMID:17575048 PMID:20545769 PMID:21482717 PMID:21777809 PMID:23891287 More... NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674 		JBrowse link
G Vav1 vav guanine nucleotide exchange factor 1 enables ISO
IEA		 UniProtKB:Q9QZE2 (MGI:2179131|PMID:10744659)
GO_REF:0000107		 RGD
Ensembl		 PMID:10744659 GO_REF:0000107 MGI:2179131 NCBI chr 9:2,161,985...2,209,951
Ensembl chr 9:2,157,900...2,208,937 		JBrowse link
poly-ADP-D-ribose modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cgas cyclic GMP-AMP synthase enables ISO (PMID:35210392) RGD PMID:35210392 NCBI chr 8:79,292,282...79,306,998
Ensembl chr 8:79,294,511...79,305,496 		JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like enables ISO (PMID:29220652), (PMID:29220653), (PMID:34874266)
(PMID:34486521)		 RGD PMID:29220652 PMID:29220653 PMID:34486521 PMID:34874266 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 enables ISO (PMID:35597237) RGD PMID:35597237 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607 		JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 enables ISO (PMID:30104678) RGD PMID:30104678 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338 		JBrowse link
polyubiquitin modification-dependent protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118
G Abraxas1 abraxas 1, BRCA1 A complex subunit enables ISO
IEA
IBA
ISS		 (PMID:19261749)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:19261749 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:8,796,281...8,810,625
Ensembl chr14:8,796,266...8,810,622 		JBrowse link
G Abraxas2 abraxas 2, BRISC complex subunit enables ISO
IBA		 (PMID:19261749)
GO_REF:0000033		 RGD
GO_Central		 PMID:19261749 GO_REF:0000033 NCBI chr 1:187,647,078...187,672,660
Ensembl chr 1:187,647,067...187,672,655 		JBrowse link
G Afg2a AFG2 AAA ATPase homolog A enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:120,306,417...120,497,707
Ensembl chr 2:120,306,412...120,497,705 		JBrowse link
G Agap3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 enables ISO (PMID:16461359) RGD PMID:16461359 NCBI chr 4:10,674,746...10,724,848
Ensembl chr 4:10,674,064...10,725,244 		JBrowse link
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase enables ISO (PMID:17908927) RGD PMID:17908927 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 enables ISO
IEA
ISS		 (PMID:19261749)
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:19261749 GO_REF:0000024 GO_REF:0000104 NCBI chr 6:24,369,021...24,788,416
Ensembl chr 6:24,369,022...24,833,951 		JBrowse link
G Bag6 BAG cochaperone 6 enables ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:4887294|PMID:20713601)		 UniProt
TreeGrafter
GO_Central
Ensembl
RGD		 PMID:20713601 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:4887294 NCBI chr20:3,675,938...3,690,414
Ensembl chr20:3,675,938...3,688,657 		JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:19261749)		 UniProt
GO_Central
RGD		 PMID:19261749 GO_REF:0000024 GO_REF:0000033 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080 		JBrowse link
G Brcc3dc BRCA1/BRCA2-containing complex, subunit 3, domain containing enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:44,014,889...44,016,646
Ensembl chr 7:44,005,646...44,016,670 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 enables ISO (PMID:15936278), (PMID:21625540) RGD PMID:15936278 PMID:21625540 NCBI chr 9:76,731,060...76,739,278
Ensembl chr 9:76,731,065...76,739,277 		JBrowse link
G Dzip3 DAZ interacting zinc finger protein 3 enables ISO
IBA		 (PMID:12538761)
GO_REF:0000033		 RGD
GO_Central		 PMID:12538761 GO_REF:0000033 NCBI chr11:51,823,235...51,893,353
Ensembl chr11:51,823,231...51,893,353 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 enables ISO (PMID:24768539) RGD PMID:24768539 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221 		JBrowse link
G Faap20 FA core complex associated protein 20 enables ISO
ISS		 (PMID:22396592)
GO_REF:0000024		 RGD
UniProt		 PMID:22396592 GO_REF:0000024 NCBI chr 5:165,808,370...165,815,291
Ensembl chr 5:165,808,657...165,815,333 		JBrowse link
G Hdac6 histone deacetylase 6 enables ISO (PMID:14675537) RGD PMID:14675537 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma enables ISO (PMID:27777308) RGD PMID:27777308 NCBI chr  X:152,216,485...152,241,476
Ensembl chr  X:152,216,596...152,239,499 		JBrowse link
G Isg15 ISG15 ubiquitin-like modifier enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:166,784,148...166,785,435
Ensembl chr 5:166,784,148...166,785,435 		JBrowse link
G Mpnd MPN domain containing enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:839,473...846,446
Ensembl chr 9:840,143...846,439 		JBrowse link
G Optn optineurin enables ISO (PMID:21617041) RGD PMID:21617041 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Psmd4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,598,934...182,608,250
Ensembl chr 2:182,598,934...182,608,194 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase enables ISO (PMID:22742833) RGD PMID:22742833 NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein enables ISO
IBA		 (PMID:12643283)
GO_REF:0000033		 RGD
GO_Central		 PMID:12643283 GO_REF:0000033 NCBI chr19:23,313,563...23,320,702
Ensembl chr19:23,314,797...23,320,695 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein enables ISO
IBA
IEA		 (PMID:19435460)
GO_REF:0000033
GO_REF:0000104		 RGD
GO_Central
UniProt		 PMID:19435460 GO_REF:0000033 GO_REF:0000104 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319 		JBrowse link
G Sharpin SHANK-associated RH domain interactor enables ISS
ISO		 GO_REF:0000024
(PMID:21455173), (PMID:21455181)		 UniProt
RGD		 PMID:21455173 PMID:21455181 GO_REF:0000024 NCBI chr 7:108,070,681...108,075,012
Ensembl chr 7:108,070,687...108,074,955 		JBrowse link
G Sprtn SprT-like N-terminal domain enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:52,857,612...52,864,864
Ensembl chr19:52,857,866...52,864,864 		JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 enables ISO (MGI:5319605|PMID:18212736) RGD PMID:18212736 MGI:5319605 NCBI chr10:39,037,048...39,084,328
Ensembl chr10:39,037,058...39,077,625 		JBrowse link
G Tnip2 TNFAIP3 interacting protein 2 enables ISO (PMID:18212736) RGD PMID:18212736 NCBI chr14:76,228,350...76,245,553
Ensembl chr14:76,228,371...76,275,265 		JBrowse link
G Tnip3 TNFAIP3 interacting protein 3 enables ISO (PMID:18212736) RGD PMID:18212736 NCBI chr 4:94,867,258...94,908,780
Ensembl chr 4:94,811,097...94,907,605 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein enables ISO (PMID:14563850), (PMID:15047686) RGD PMID:14563850 PMID:15047686 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384 		JBrowse link
G Ubac1 UBA domain containing 1 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:16227581)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16227581 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:8,825,444...8,848,055
Ensembl chr 3:8,825,447...8,848,028 		JBrowse link
G Ubl7 ubiquitin-like 7 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:58,321,279...58,340,353
Ensembl chr 8:58,320,866...58,340,344 		JBrowse link
G Ubqln1 ubiquilin 1 enables IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:15147878)		 Ensembl
GO_Central
TreeGrafter
UniProt
RGD		 PMID:15147878 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090 		JBrowse link
G Ubqln2 ubiquilin 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505 		JBrowse link
G Ubqln3 ubiquilin 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,604,629...158,607,318
Ensembl chr 1:158,604,355...158,607,389 		JBrowse link
G Ubqln4 ubiquilin 4 enables ISO
IBA		 UniProtKB:Q6ICB0 (PMID:15280365), (PMID:29666234), (PMID:30612738)
GO_REF:0000033		 RGD
GO_Central		 PMID:15280365 PMID:29666234 PMID:30612738 GO_REF:0000033 NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059 		JBrowse link
G Ubqln5 ubiquilin 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,592,368...158,594,244
Ensembl chr 1:158,592,367...158,594,481 		JBrowse link
G Ubqlnl ubiquilin-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:158,615,177...158,617,426
Ensembl chr 1:158,615,056...158,617,512 		JBrowse link
G Ubxn1 UBX domain protein 1 enables ISO (PMID:15362974) RGD PMID:15362974 NCBI chr 1:205,765,309...205,769,234
Ensembl chr 1:205,745,120...205,816,520 		JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:82,161,618...82,185,107
Ensembl chr11:82,161,619...82,185,087 		JBrowse link
G Vcp valosin-containing protein enables ISO
IBA		 (PMID:11483959)
GO_REF:0000033
(MGI:4441139|PMID:11483959)		 RGD
GO_Central		 PMID:11483959 GO_REF:0000033 MGI:4441139 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Zfand2b zinc finger AN1-type containing 2B enables ISO (MGI:5563003|PMID:24160817) RGD PMID:24160817 MGI:5563003 NCBI chr 9:76,665,466...76,668,447
Ensembl chr 9:76,665,546...76,668,445 		JBrowse link
G Zfand6 zinc finger AN1-type containing 6 enables ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(MGI:5427069|PMID:21980954)		 UniProt
TreeGrafter
GO_Central
RGD		 PMID:21980954 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:5427069 NCBI chr 1:138,581,002...138,652,052
Ensembl chr 1:138,581,002...138,651,939 		JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 enables ISO (PMID:25752573), (PMID:25752577) RGD PMID:25752573 PMID:25752577 NCBI chr 1:187,725,354...187,780,129
Ensembl chr 1:187,724,320...187,779,655 		JBrowse link
SUMO-modified protein reader activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daxx death-domain associated protein enables ISO
IEA		 UniProtKB:P29590 (PMID:17081986)
GO_REF:0000107		 RGD
Ensembl		 PMID:17081986 GO_REF:0000107 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Pml PML nuclear body scaffold enables ISO UniProtKB:Q9UER7 (PMID:17081986) RGD PMID:17081986 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971 		JBrowse link
ubiquitin-modified histone reader activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc38 coiled-coil domain containing 38 enables ISO (MGI:6709223|PMID:27278724) RGD PMID:27278724 MGI:6709223 NCBI chr 7:28,055,883...28,129,938
Ensembl chr 7:28,059,798...28,130,441 		JBrowse link
G Dnajc2 DnaJ heat shock protein family (Hsp40) member C2 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21179169)		 UniProt
Ensembl
RGD		 PMID:21179169 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:13,270,239...13,297,438
Ensembl chr 4:13,270,191...13,297,431 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 enables ISO MGI:5888989 (PMID:27892467) RGD PMID:27892467 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
G Rnf169 ring finger protein 169 enables ISO (PMID:22492721) RGD PMID:22492721 NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 enables ISO (PMID:22492721), (PMID:23760478), (PMID:27153538), (PMID:32209463) RGD PMID:22492721 PMID:23760478 PMID:27153538 PMID:32209463 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 enables IEA
ISO		 GO_REF:0000107
(PMID:22492721)		 Ensembl
RGD		 PMID:22492721 GO_REF:0000107 NCBI chr17:9,523,793...9,592,810
Ensembl chr17:9,527,794...9,592,799 		JBrowse link
G Usp15 ubiquitin specific peptidase 15 enables ISO
IEA		 (PMID:24526689)
GO_REF:0000107		 RGD
Ensembl		 PMID:24526689 GO_REF:0000107 NCBI chr 7:58,756,714...58,848,778
Ensembl chr 7:58,756,872...58,848,721 		JBrowse link
ubiquitin-modified protein reader activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd13a ankyrin repeat domain 13a enables ISO UniProtKB:P00533 (PMID:22298428) RGD PMID:22298428 NCBI chr12:41,798,196...41,828,327
Ensembl chr12:41,798,199...41,829,327 		JBrowse link
G Ankrd13b ankyrin repeat domain 13B enables ISO UniProtKB:P00533 (PMID:22298428) RGD PMID:22298428 NCBI chr10:62,319,660...62,338,342
Ensembl chr10:62,319,647...62,340,253 		JBrowse link
G Ankrd13d ankyrin repeat domain 13D enables ISO UniProtKB:P00533 (PMID:22298428) RGD PMID:22298428 NCBI chr 1:201,565,712...201,577,987
Ensembl chr 1:201,565,712...201,577,933 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 enables ISO (PMID:28031292) RGD PMID:28031292 NCBI chr 9:76,731,060...76,739,278
Ensembl chr 9:76,731,065...76,739,277 		JBrowse link
G Faap20 FA core complex associated protein 20 enables ISO
ISS		 (PMID:22266823)
GO_REF:0000024		 RGD
UniProt		 PMID:22266823 GO_REF:0000024 NCBI chr 5:165,808,370...165,815,291
Ensembl chr 5:165,808,657...165,815,333 		JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 enables ISO (PMID:20603015), (PMID:20603016) RGD PMID:20603015 PMID:20603016 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate enables ISO (MGI:5619493|PMID:11916981) RGD PMID:11916981 MGI:5619493 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835 		JBrowse link
G Ide insulin degrading enzyme enables ISO
IEA		 UniProtKB:P0CG48 (PMID:21185309)
GO_REF:0000107		 RGD
Ensembl		 PMID:21185309 GO_REF:0000107 NCBI chr 1:235,002,984...235,102,448
Ensembl chr 1:234,995,351...235,102,440 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 enables ISO (PMID:17116753) RGD PMID:17116753 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807 		JBrowse link
G Pex1 peroxisomal biogenesis factor 1 enables ISO (PMID:19208625), (PMID:29884772) RGD PMID:19208625 PMID:29884772 NCBI chr 4:30,519,950...30,558,953
Ensembl chr 4:30,519,955...30,558,921 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 enables ISS
ISO		 GO_REF:0000024
(PMID:19208625), (PMID:29884772)		 UniProt
RGD		 PMID:19208625 PMID:29884772 GO_REF:0000024 NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303 		JBrowse link
G Sqstm1 sequestosome 1 enables ISS
ISO		 GO_REF:0000024
(PMID:22017874), (PMID:27498865), (PMID:31857589)
(MGI:6212926|PMID:25723488)		 UniProt
RGD		 PMID:22017874 PMID:25723488 PMID:27498865 PMID:31857589 GO_REF:0000024 MGI:6212926 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
G Vcp valosin-containing protein enables ISO (PMID:35013556) RGD PMID:35013556 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20890
    binding 17950
      protein binding 14727
        modification-dependent protein binding 229
          ADP-D-ribose modification-dependent protein binding + 7
          acetylation-dependent protein binding + 27
          glycosylation-dependent protein binding 0
          methylation-dependent protein binding + 111
          phosphorylation-dependent protein binding + 9
          polyubiquitin modification-dependent protein binding + 66
          ubiquitin-like protein reader activity + 22
paths to the root