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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of pigmentation
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Accession:GO:0120305 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the deposition or modulates the distribution of coloring matter in an organism.



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negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807630|PMID:17464332) RGD PMID:17464332 MGI:3807630 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99702 (MGI:894988|PMID:9241272)
Ensembl
RGD
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (MGI:1352325|PMID:10674380), (MGI:894988|PMID:9241272) RGD PMID:9241272 PMID:10674380 MGI:1352325 MGI:894988 NCBI chr13:22,689,783...22,853,920 JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (MGI:3618415|PMID:16427619)
Ensembl
RGD
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (MGI:3778519|PMID:18454205), (MGI:60945|PMID:14138974) RGD PMID:14138974 PMID:18454205 MGI:3778519 MGI:60945 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (MGI:60945|PMID:14138974) RGD PMID:14138974 MGI:60945 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856687 (MGI:2450053|PMID:12538872)
Ensembl
RGD
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 sphingolipid transporter 2 acts_upstream_of_or_within ISO MGI:4460276 (MGI:5442641|PMID:22664872) RGD PMID:22664872 MGI:5442641 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19812
    pigmentation 101
      regulation of pigmentation 13
        background adaptation + 0
        regulation of developmental pigmentation + 13
Path 2
Term Annotations click to browse term
  biological_process 19812
    biological regulation 13762
      regulation of biological process 13019
        regulation of pigmentation 13
          background adaptation + 0
          regulation of developmental pigmentation + 13
paths to the root