Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:hydrocarbon catabolic process
go back to main search page
Accession:GO:0120253 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a hydrocarbon, a compound consisting of carbon and hydrogen only.
Synonyms:exact_synonym: hydrocarbon breakdown;   hydrocarbon catabolism;   hydrocarbon degradation


show annotations for term's descendants           Sort by:
carotene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in IEA
IBA
IMP
IDA		 (PMID:17951468)
(PMID:11401432), (PMID:24668807)		 Ensembl
TreeGrafter
GO_Central
UniProt		 PMID:11401432 PMID:17951468 PMID:24668807 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142 		JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in IEA
IBA
IDA		 (PMID:21302131) Ensembl
GO_Central
TreeGrafter
BHF-UCL		 PMID:21302131 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699 		JBrowse link
lycopene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699 		JBrowse link
naphthalene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2F1 cytochrome P450 family 2 subfamily F member 1 involved_in
acts_upstream_of_or_within		 IDA
ISO
IEA		 (PMID:10383923)
(PMID:16876762)		 UniProt
MGI
Ensembl		 PMID:10383923 PMID:16876762 GO_REF:0000107 NCBI chr19:41,114,432...41,128,381
Ensembl chr19:41,114,432...41,128,381 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    metabolic process 12509
      organic substance metabolic process 12005
        hydrocarbon metabolic process 9
          hydrocarbon catabolic process 3
            alkane catabolic process + 0
            alkene catabolic process + 0
            alkyne catabolic process + 0
            benzene catabolic process 0
            fluorene catabolic process 0
            naphthalene catabolic process 1
            phenanthrene catabolic process + 0
            styrene catabolic process 0
            terpene catabolic process + 2
            toluene catabolic process + 0
            xylene catabolic process + 0
paths to the root