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ONTOLOGY REPORT - ANNOTATIONS


Term:Sm-like protein family complex
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Accession:GO:0120114 term browser browse the term
Definition:A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.


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Sm-like protein family complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gemin7 gem (nuclear organelle) associated protein 7 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,473,966...80,487,976
Ensembl chr 1:80,473,966...80,483,487
JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:78,954,274...78,955,038
Ensembl chr 4:78,954,599...78,954,997
JBrowse link
7SK snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hexim1 HEXIM P-TEFb complex subunit 1 part_of ISO (PMID:18249148), (PMID:18483487), (PMID:28431135) RGD PMID:18249148 PMID:18483487 PMID:28431135 NCBI chr10:91,200,874...91,202,986
Ensembl chr10:91,200,874...91,202,984
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator part_of ISO
IEA
(PMID:18249148), (PMID:18483487), (PMID:28431135)
GO_REF:0000107
RGD
Ensembl
PMID:18249148 PMID:18483487 PMID:28431135 GO_REF:0000107 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
G Mepce methylphosphate capping enzyme part_of ISO (PMID:17643375), (PMID:28431135) RGD PMID:17643375 PMID:28431135 NCBI chr12:21,721,246...21,725,965
Ensembl chr12:21,721,837...21,725,435
Ensembl chr12:21,721,837...21,725,435
JBrowse link
Lsm1-7-Pat1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC126899.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:44,396,248...44,396,610 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
Lsm2-8 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated part_of ISO (PMID:10523320) RGD PMID:10523320 NCBI chr 4:45,555,077...45,560,943
Ensembl chr 4:45,555,077...45,560,943
JBrowse link
pICln-Sm protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clns1a chloride nucleotide-sensitive channel 1A part_of IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18984161)
Ensembl
UniProt
RGD
PMID:18984161 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:162,676,246...162,696,549
Ensembl chr 1:162,676,269...162,696,544
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA
ISO
PMID:21873635
(PMID:18984161)
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
small nuclear ribonucleoprotein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef1 ADP ribosylation factor guanine nucleotide exchange factor 1 part_of ISO
ISS
(PMID:18292223)
GO_REF:0000024
RGD
UniProt
PMID:18292223 GO_REF:0000024 NCBI chr 5:8,666,046...8,760,458
Ensembl chr 5:8,666,200...8,760,458
JBrowse link
G Prpf8 pre-mRNA processing factor 8 IDA RGD PMID:1707521 RGD:10045883 NCBI chr10:63,635,239...63,658,360
Ensembl chr10:63,635,219...63,658,361
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO (MGI:4440688|PMID:20153721) RGD PMID:20153721 MGI:4440688 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Slu7 SLU7 homolog, splicing factor part_of ISS
ISO
PMID:15181151
(PMID:15181151)
RGD PMID:15181151, PMID:15181151 RGD:1304333 NCBI chr10:29,029,556...29,044,919
Ensembl chr10:29,029,590...29,044,583
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 IDA RGD PMID:1707521 RGD:10045883 NCBI chr 3:137,138,082...137,147,575
Ensembl chr 3:137,137,980...137,147,575
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:11991638) RGD PMID:11991638 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
SMN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx20 DEAD-box helicase 20 part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 2:208,144,142...208,154,764
Ensembl chr 2:208,144,139...208,152,179
JBrowse link
G Fmr1 FMRP translational regulator 1 colocalizes_with
part_of
ISO
IEA
ISS
(PMID:18093976)
(MGI:5763366|PMID:18093976)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18093976 GO_REF:0000024 GO_REF:0000107 MGI:5763366 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 part_of ISO
ISS
IBA
(PMID:18984161)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:80,108,751...80,122,382
Ensembl chr 6:80,108,655...80,122,365
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr10:64,364,808...64,375,885
Ensembl chr10:64,368,809...64,375,816
JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 part_of ISO (PMID:18984161), (PMID:20513430) RGD PMID:18984161 PMID:20513430 NCBI chr10:43,552,260...43,599,241
Ensembl chr10:43,554,046...43,599,232
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 6:2,907,040...2,911,577
Ensembl chr 6:2,907,145...2,911,559
JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:80,473,966...80,487,976
Ensembl chr 1:80,473,966...80,483,487
JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 part_of ISO
IBA
(PMID:16434402), (PMID:18984161)
PMID:21873635
RGD PMID:16434402 PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr  X:29,806,605...29,825,439
Ensembl chr  X:29,806,606...29,825,439
JBrowse link
G Smn1 survival of motor neuron 1, telomeric part_of ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:11283611), (PMID:18093976), (PMID:18984161)
UniProt
RGD
PMID:11283611 PMID:18093976 PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Strap serine/threonine kinase receptor associated protein part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:18984161)
UniProt
RGD
PMID:18984161, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:171,730,629...171,744,877
Ensembl chr 4:171,730,635...171,745,377
JBrowse link
SMN-Gemin2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gemin5 gem (nuclear organelle) associated protein 5 part_of ISO (PMID:19377484) RGD PMID:19377484 NCBI chr10:43,552,260...43,599,241
Ensembl chr10:43,554,046...43,599,232
JBrowse link
SMN-Sm protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G Ddx20 DEAD-box helicase 20 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 2:208,144,142...208,154,764
Ensembl chr 2:208,144,139...208,152,179
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 part_of ISS
ISO
GO_REF:0000024
(PMID:18984161)
UniProt
RGD
PMID:18984161 GO_REF:0000024 NCBI chr 6:80,108,751...80,122,382
Ensembl chr 6:80,108,655...80,122,365
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr10:64,364,808...64,375,885
Ensembl chr10:64,368,809...64,375,816
JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr10:43,552,260...43,599,241
Ensembl chr10:43,554,046...43,599,232
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 6:2,907,040...2,911,577
Ensembl chr 6:2,907,145...2,911,559
JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:80,473,966...80,487,976
Ensembl chr 1:80,473,966...80,483,487
JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:78,954,274...78,955,038
Ensembl chr 4:78,954,599...78,954,997
JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr  X:29,806,605...29,825,439
Ensembl chr  X:29,806,606...29,825,439
JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Smn1 survival of motor neuron 1, telomeric part_of ISS
ISO
GO_REF:0000024
(PMID:18984161)
UniProt
RGD
PMID:18984161 GO_REF:0000024 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISS
ISO
GO_REF:0000024
(PMID:18984161)
UniProt
RGD
PMID:18984161 GO_REF:0000024 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA
ISO
PMID:21873635
(PMID:18984161)
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IBA
(PMID:18984161)
PMID:21873635
RGD PMID:18984161, PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Strap serine/threonine kinase receptor associated protein part_of ISO
ISS
(PMID:18984161)
GO_REF:0000024
RGD
UniProt
PMID:18984161 GO_REF:0000024 NCBI chr 4:171,730,629...171,744,877
Ensembl chr 4:171,730,635...171,745,377
JBrowse link
spliceosomal snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf4 pre-mRNA processing factor 4 part_of ISO (PMID:25383878) RGD PMID:25383878 NCBI chr 5:78,267,248...78,281,172
Ensembl chr 5:78,267,248...78,281,172
JBrowse link
spliceosomal tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
U1 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AC096024.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Luc7l LUC7-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,538,878...15,572,651
Ensembl chr10:15,538,872...15,568,638
JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:66,290,319...66,357,970
Ensembl chr 4:66,290,389...66,354,711
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:81,991,147...82,027,119
Ensembl chr10:81,991,147...82,027,119
JBrowse link
G Prpf39 pre-mRNA processing factor 39 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:86,785,793...86,810,806
Ensembl chr 6:86,785,771...86,810,316
JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:38,680,583...38,741,570
Ensembl chr 3:38,682,146...38,741,113
JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,958,952...140,981,588
Ensembl chr 7:140,967,282...140,981,583
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 part_of IDA
ISO
IBA
(PMID:21113136), (PMID:23793891), (PMID:25555158)
PMID:21873635
RGD PMID:21113136 PMID:23793891 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A part_of IDA
ISO
IBA
(PMID:21113136), (PMID:23793891)
PMID:21873635
RGD PMID:21113136 PMID:23793891, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr 1:83,999,670...84,008,429
Ensembl chr 1:83,999,671...84,008,293
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA
ISO
IBA
ISS
(PMID:21113136), (PMID:25555158)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21113136 PMID:25555158, PMID:8371979, PMID:21873635 GO_REF:0000024, RGD:1601359, RGD:13792537 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:137,138,082...137,147,575
Ensembl chr 3:137,137,980...137,147,575
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C part_of IDA
ISO
IBA
ISS
(PMID:15312772), (PMID:15525645), (PMID:21113136)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:15312772 PMID:15525645 PMID:21113136, PMID:16502463, PMID:21873635 GO_REF:0000024, RGD:10448962, RGD:13792537 NCBI chr20:7,409,401...7,427,581
Ensembl chr20:7,409,401...7,427,581
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IDA
IBA
ISO
PMID:21873635
(PMID:21113136), (PMID:25555158)
RGD PMID:21113136 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IDA
IBA
ISO
PMID:21873635
(PMID:21113136), (PMID:25555158)
RGD PMID:21113136 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,872,902...28,873,434
Ensembl chr20:28,873,007...28,873,363
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IDA
IBA
ISO
PMID:21873635
(PMID:21113136), (PMID:25555158)
RGD PMID:21113136 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IDA
ISO
IBA
(PMID:21113136), (PMID:25555158)
PMID:21873635
RGD PMID:21113136 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of IBA
ISO
PMID:21873635
(PMID:21113136), (PMID:25555158)
RGD PMID:21113136 PMID:25555158, PMID:21873635 RGD:13792537 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IDA
ISO
IBA
(PMID:21113136), (PMID:25555158)
PMID:21873635
RGD PMID:21113136 PMID:25555158, PMID:16502463, PMID:21873635 RGD:10448962, RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8371979, PMID:21873635 RGD:1601359, RGD:13792537 NCBI chr 1:195,074,328...195,096,460
Ensembl chr 1:195,074,330...195,096,460
JBrowse link
U11/U12 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO (PMID:11252167) RGD PMID:11252167 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
U2 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AC096024.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:159,514,053...159,528,281
Ensembl chr  X:159,513,800...159,528,281
JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Phf5a PHD finger protein 5A part_of ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:12234937)
UniProt
RGD
PMID:12234937, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:123,095,286...123,101,851
Ensembl chr 7:123,095,288...123,101,869
JBrowse link
G Rbmx2 RNA binding motif protein, X-linked 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:135,550,931...135,558,440
Ensembl chr  X:135,550,834...135,558,440
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 part_of ISO
IBA
(PMID:10882114), (PMID:11533230), (PMID:23793891)
PMID:21873635
RGD PMID:10882114 PMID:11533230 PMID:23793891, PMID:21873635 RGD:13792537 NCBI chr14:84,393,182...84,413,931
Ensembl chr14:84,393,182...84,413,931
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 part_of ISO
IBA
ISS
(PMID:11533230)
(MGI:6490747|PMID:33230114)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:11533230 PMID:33230114, PMID:21873635 GO_REF:0000024 MGI:6490747, RGD:13792537 NCBI chr 7:11,777,826...11,784,373
Ensembl chr 7:11,777,826...11,783,849
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 part_of ISO (PMID:11533230)
(MGI:6490747|PMID:33230114)
RGD PMID:11533230 PMID:33230114 MGI:6490747 NCBI chr 5:142,702,721...142,722,350
Ensembl chr 5:142,702,685...142,722,341
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of IBA
ISO
PMID:21873635
(PMID:11252167)
(MGI:6490747|PMID:33230114)
RGD PMID:11252167 PMID:33230114, PMID:21873635 MGI:6490747, RGD:13792537 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,645,685...220,665,611
Ensembl chr 1:220,645,672...220,665,603
JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,392,071...43,429,582
Ensembl chr19:43,392,085...43,429,580
JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:7,101,715...7,102,427
Ensembl chr 1:7,101,715...7,102,426
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:29,991,232...29,999,668
Ensembl chr 6:29,991,307...29,999,410
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of IBA
ISO
PMID:21873635
(MGI:6490747|PMID:33230114)
RGD PMID:33230114, PMID:21873635 MGI:6490747, RGD:13792537 NCBI chr 1:126,961,389...126,974,453
Ensembl chr 1:126,961,389...126,974,453
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8371979, PMID:21873635 RGD:1601359, RGD:13792537 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:2951739) RGD PMID:2951739 NCBI chr 3:137,138,082...137,147,575
Ensembl chr 3:137,137,980...137,147,575
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,872,902...28,873,434
Ensembl chr20:28,873,007...28,873,363
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8371979, PMID:21873635 RGD:1601359, RGD:13792537 NCBI chr 1:195,074,328...195,096,460
Ensembl chr 1:195,074,330...195,096,460
JBrowse link
G U2surp U2 snRNP-associated SURP domain containing part_of ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 8:103,242,095...103,299,082
Ensembl chr 8:103,246,558...103,298,927
JBrowse link
U4 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AC096024.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G Ddx39b DExD-box helicase 39B colocalizes_with ISO (PMID:18593880) RGD PMID:18593880 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of ISO
IBA
(PMID:17412961)
PMID:21873635
RGD PMID:17412961, PMID:21873635 RGD:13792537 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISS
ISO
IBA
GO_REF:0000024
(PMID:21516107)
PMID:21873635
UniProt
RGD
PMID:21516107, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IBA
(PMID:21516107)
PMID:21873635
RGD PMID:21516107, PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:21516107) RGD PMID:21516107 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA
(PMID:21516107)
PMID:21873635
RGD PMID:21516107, PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IBA
ISO
PMID:21873635
(PMID:21516107)
RGD PMID:21516107, PMID:21873635 RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:21516107) RGD PMID:21516107 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA
ISO
PMID:21873635
(PMID:21516107)
RGD PMID:21516107, PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:195,074,328...195,096,460
Ensembl chr 1:195,074,330...195,096,460
JBrowse link
U4/U6 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppih peptidylprolyl isomerase H part_of ISO (PMID:9570313) RGD PMID:9570313 NCBI chr 5:138,343,934...138,361,743
Ensembl chr 5:138,352,916...138,361,702
JBrowse link
G Prpf4 pre-mRNA processing factor 4 part_of ISO (PMID:25383878), (PMID:9570313) RGD PMID:9570313 PMID:25383878 NCBI chr 5:78,267,248...78,281,172
Ensembl chr 5:78,267,248...78,281,172
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein colocalizes_with ISO (PMID:12032085) RGD PMID:12032085 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
U4/U6 x U5 tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042323.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:152,781,188...152,781,574 JBrowse link
G AC096024.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G AC126899.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:44,396,248...44,396,610 JBrowse link
G Cd2bp2 Cd2 (cytoplasmic tail) binding protein 2 NOT|part_of ISO (PMID:15840814) RGD PMID:15840814 NCBI chr 1:198,635,445...198,641,195
Ensembl chr 1:198,635,447...198,638,944
JBrowse link
G Ddx23 DEAD-box helicase 23 part_of ISO (PMID:9409622) RGD PMID:9409622 NCBI chr 7:140,325,453...140,342,730
Ensembl chr 7:140,325,431...140,342,727
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO
IBA
(PMID:23793891)
PMID:21873635
RGD PMID:23793891, PMID:21873635 RGD:13792537 NCBI chr10:90,932,071...90,983,971
Ensembl chr10:90,932,075...90,983,928
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like part_of ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:281,863,115...281,864,546
Ensembl chr 1:281,863,918...281,864,304
Ensembl chr 7:281,863,918...281,864,304
JBrowse link
G LOC100360750 Sm protein F-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:47,380,376...47,382,933
Ensembl chr13:47,380,406...47,382,955
Ensembl chr19:47,380,406...47,382,955
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:10523320), (PMID:26912367)
RGD PMID:10523320 PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:10369684), (PMID:10523320), (PMID:26912367)
RGD PMID:10369684 PMID:10523320 PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:26912367)
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO
PMID:21873635
(PMID:26912367)
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated part_of IBA
ISO
PMID:21873635
(PMID:26912367)
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr 4:45,555,077...45,560,943
Ensembl chr 4:45,555,077...45,560,943
JBrowse link
G Ppih peptidylprolyl isomerase H part_of ISO (PMID:9570313) RGD PMID:9570313 NCBI chr 5:138,343,934...138,361,743
Ensembl chr 5:138,352,916...138,361,702
JBrowse link
G Prpf18 pre-mRNA processing factor 18 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
G Prpf3 pre-mRNA processing factor 3 part_of ISO
IBA
(PMID:26912367)
PMID:21873635
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr 2:197,947,010...197,971,464
Ensembl chr 2:197,947,010...197,971,463
JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of ISO (PMID:11867543), (PMID:23793891), (PMID:26912367) RGD PMID:11867543 PMID:23793891 PMID:26912367 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Prpf4 pre-mRNA processing factor 4 part_of ISO
IBA
(PMID:23793891)
PMID:21873635
RGD PMID:23793891, PMID:21873635 RGD:13792537 NCBI chr 5:78,267,248...78,281,172
Ensembl chr 5:78,267,248...78,281,172
JBrowse link
G Prpf6 pre-mRNA processing factor 6 part_of ISO
IBA
(PMID:10788320)
PMID:21873635
RGD PMID:10788320, PMID:21873635 RGD:13792537 NCBI chr 3:177,098,137...177,162,937
Ensembl chr 3:177,098,073...177,162,916
JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO (PMID:23793891) RGD PMID:23793891 NCBI chr10:63,635,239...63,658,360
Ensembl chr10:63,635,219...63,658,361
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:152,781,177...152,781,621 JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,762,496...220,771,158
Ensembl chr 1:220,762,349...220,771,181
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT|colocalizes_with ISO (PMID:12032085) RGD PMID:12032085 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 part_of IEA
ISO
GO_REF:0000107
(PMID:23793891)
Ensembl
RGD
PMID:23793891 GO_REF:0000107 NCBI chr 3:119,640,324...119,669,651
Ensembl chr 3:119,640,298...119,669,639
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO
IBA
ISS
(PMID:26912367)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26912367, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO
IBA
(PMID:26912367)
PMID:21873635
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,872,902...28,873,434
Ensembl chr20:28,873,007...28,873,363
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO
IBA
(PMID:26912367)
PMID:21873635
RGD PMID:26912367, PMID:21873635 RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:195,074,328...195,096,460
Ensembl chr 1:195,074,330...195,096,460
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 part_of ISO
IBA
ISS
(PMID:26912367)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26912367, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:123,282,754...123,287,721
Ensembl chr 7:123,282,754...123,287,721
JBrowse link
G Txnl4a thioredoxin-like 4A part_of ISO (PMID:26912367) RGD PMID:26912367 NCBI chr18:76,725,221...76,740,673
Ensembl chr18:76,725,247...76,740,688
JBrowse link
G Txnl4b thioredoxin-like 4B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:42,101,081...42,110,223
Ensembl chr19:42,101,902...42,107,601
JBrowse link
G Usp39 ubiquitin specific peptidase 39 part_of ISO (PMID:11350945), (PMID:26912367) RGD PMID:11350945 PMID:26912367 NCBI chr 4:100,181,408...100,211,425
Ensembl chr 4:100,181,455...100,213,858
JBrowse link
G Zmat2 zinc finger, matrin type 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:29,639,991...29,644,626
Ensembl chr18:29,639,872...29,644,652
JBrowse link
U4atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:281,863,115...281,864,546
Ensembl chr 1:281,863,918...281,864,304
Ensembl chr 7:281,863,918...281,864,304
JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of ISO (PMID:21784869) RGD PMID:21784869 NCBI chr 1:64,150,786...64,162,461
Ensembl chr 1:64,150,786...64,162,461
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 part_of ISS
ISO
GO_REF:0000024
(PMID:21784869)
UniProt
RGD
PMID:21784869 GO_REF:0000024 NCBI chr 7:123,282,754...123,287,721
Ensembl chr 7:123,282,754...123,287,721
JBrowse link
U4atac/U6atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT|colocalizes_with ISO (PMID:14749385) RGD PMID:14749385 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
U5 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AC096024.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:141,503,833...141,504,111 JBrowse link
G Cd2bp2 Cd2 (cytoplasmic tail) binding protein 2 part_of ISO
IBA
(PMID:15840814)
PMID:21873635
RGD PMID:15840814, PMID:21873635 RGD:13792537 NCBI chr 1:198,635,445...198,641,195
Ensembl chr 1:198,635,447...198,638,944
JBrowse link
G Ddx23 DEAD-box helicase 23 part_of ISO (PMID:9539711) RGD PMID:9539711 NCBI chr 7:140,325,453...140,342,730
Ensembl chr 7:140,325,431...140,342,727
JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Prpf18 pre-mRNA processing factor 18 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
G Prpf6 pre-mRNA processing factor 6 part_of ISO (PMID:10788320) RGD PMID:10788320 NCBI chr 3:177,098,137...177,162,937
Ensembl chr 3:177,098,073...177,162,916
JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,635,239...63,658,360
Ensembl chr10:63,635,219...63,658,361
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 part_of ISO
IEA
(PMID:9539711)
GO_REF:0000107
RGD
Ensembl
PMID:9539711 GO_REF:0000107 NCBI chr 3:119,640,324...119,669,651
Ensembl chr 3:119,640,298...119,669,639
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:1,866,066...1,876,613
Ensembl chr18:1,866,080...1,876,613
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,057,140...80,059,990
Ensembl chr 1:80,056,755...80,059,996
JBrowse link
G Snrpd2l small nuclear ribonucleoprotein D2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:28,872,902...28,873,434
Ensembl chr20:28,873,007...28,873,363
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpel1 small nuclear ribonucleoprotein polypeptide E-like1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:129,371,546...129,371,994 JBrowse link
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,503,818...141,504,126 JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:195,074,328...195,096,460
Ensembl chr 1:195,074,330...195,096,460
JBrowse link
G Txnl4a thioredoxin-like 4A part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:76,725,221...76,740,673
Ensembl chr18:76,725,247...76,740,688
JBrowse link
G Txnl4b thioredoxin-like 4B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:42,101,081...42,110,223
Ensembl chr19:42,101,902...42,107,601
JBrowse link
U6 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC126899.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:44,396,248...44,396,610 JBrowse link
G Ddx39b DExD-box helicase 39B colocalizes_with ISO (PMID:18593880) RGD PMID:18593880 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G LOC100360750 Sm protein F-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:47,380,376...47,382,933
Ensembl chr13:47,380,406...47,382,955
Ensembl chr19:47,380,406...47,382,955
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:45,555,077...45,560,943
Ensembl chr 4:45,555,077...45,560,943
JBrowse link
U6atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein colocalizes_with ISO (PMID:14749385) RGD PMID:14749385 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
U7 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm10 LSM10, U7 small nuclear RNA associated part_of ISO (PMID:11574479) RGD PMID:11574479 NCBI chr 5:144,106,339...144,108,703
Ensembl chr 5:144,106,802...144,108,708
JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated part_of ISO
IBA
(PMID:11574479)
(MGI:2676509|PMID:12975319)
PMID:21873635
RGD PMID:11574479 PMID:12975319, PMID:21873635 MGI:2676509, RGD:13792537 NCBI chr10:31,023,561...31,041,700
Ensembl chr10:31,028,697...31,041,626
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISO
ISS
(PMID:11574479)
GO_REF:0000024
RGD
UniProt
PMID:11574479 GO_REF:0000024 NCBI chr 3:122,696,125...122,703,734
Ensembl chr 3:122,695,939...122,703,734
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO (PMID:11574479) RGD PMID:11574479 NCBI chr20:14,080,562...14,095,644
Ensembl chr20:14,080,565...14,095,181
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO (PMID:11574479) RGD PMID:11574479 NCBI chr13:50,252,707...50,258,951
Ensembl chr 8:129,371,556...129,371,973
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:11574479) RGD PMID:11574479 NCBI chr 7:34,478,331...34,485,034
Ensembl chr 7:34,478,331...34,485,034
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO (PMID:11574479) RGD PMID:11574479 NCBI chr 4:118,167,267...118,174,846
Ensembl chr 4:118,167,294...118,174,842
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20142
    protein-containing complex 6031
      Sm-like protein family complex 88
        Lsm1-7-Pat1 complex 6
        Lsm2-8 complex 7
        SMN complex 10
        SMN-Gemin2 complex 1
        SMN-Sm protein complex + 20
        pICln-Sm protein complex 6
        small nuclear ribonucleoprotein complex + 75
paths to the root