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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004936573:6,288,397...6,305,984 JBrowse link
G Noct nocturnin ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004936535:8,504,518...8,509,376 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004936472:23,297,679...23,434,107 JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor ISO (PMID:20584987), (PMID:20852261) UniProtKB PMID:20584987, PMID:20852261 NCBI chrNW_004936581:3,075,371...3,100,584 JBrowse link
NAD-cap decapping term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease ISO (PMID:28283058), (PMID:31101919)
(MGI:MGI:6368104|PMID:28283058)
UniProt PMID:28283058, PMID:31101919 MGI:MGI:6368104 NCBI chrNW_004936727:1,576,823...1,579,158 JBrowse link
G Nudt12 nudix hydrolase 12 ISO (PMID:31101919)
(MGI:MGI:6368680|PMID:31101919)
UniProt PMID:31101919 MGI:MGI:6368680 NCBI chrNW_004936523:964,858...979,118 JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004936755:586,366...635,294 JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein ISO (PMID:16364915) UniProtKB PMID:16364915 NCBI chrNW_004936661:2,251,148...2,253,527 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11998
    metabolic process 7668
      organic substance metabolic process 7372
        macromolecule metabolic process 6390
          nucleic acid metabolic process 3298
            RNA metabolic process 2919
              RNA decapping 8
                NAD-cap decapping 2
                methylguanosine-cap decapping + 6
Path 2
Term Annotations click to browse term
  biological_process 11998
    metabolic process 7668
      cellular metabolic process 7073
        cellular aromatic compound metabolic process 3755
          nucleobase-containing compound metabolic process 3585
            nucleic acid metabolic process 3298
              RNA metabolic process 2919
                RNA decapping 8
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.