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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 IEA Ensembl GO_REF:0000107 NCBI chr17:4,934,379...4,950,093
Ensembl chr17:4,933,453...4,950,346
JBrowse link
G DCP1A decapping mRNA 1A IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr13:35,392,592...35,455,639
Ensembl chr13:35,392,510...35,479,703
JBrowse link
G DCP1B decapping mRNA 1B IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:68,922,086...68,976,280
Ensembl chr 5:68,923,903...68,975,957
JBrowse link
G DCPS decapping enzyme, scavenger IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 9:53,400,750...53,437,161
Ensembl chr 9:53,400,753...53,437,548
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:48,348,653...48,360,004
Ensembl chr15:48,347,864...48,385,464
JBrowse link
G NOCT nocturnin IEA Ensembl GO_REF:0000107 NCBI chr 8:87,885,411...87,909,231
Ensembl chr 8:87,885,412...87,909,655
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:5,487,019...5,614,458
Ensembl chr11:5,486,889...5,614,454
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:11,826,816...11,857,699
Ensembl chr 2:11,827,799...11,857,699
JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin IEA InterPro GO_REF:0000002 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,890,892...126,998,059
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:35,392,592...35,455,639
Ensembl chr13:35,392,510...35,479,703
JBrowse link
G DCP1B decapping mRNA 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:68,922,086...68,976,280
Ensembl chr 5:68,923,903...68,975,957
JBrowse link
G EDC3 enhancer of mRNA decapping 3 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:58,828,693...58,895,475
Ensembl chr 7:58,828,726...58,897,923
JBrowse link
G EDC4 enhancer of mRNA decapping 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:28,489,427...28,501,511
Ensembl chr 6:28,489,422...28,501,512
JBrowse link
NAD-cap decapping term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DXO decapping exoribonuclease IEA Ensembl GO_REF:0000107 NCBI chr 7:24,057,670...24,060,108
Ensembl chr 7:24,050,397...24,059,997
JBrowse link
G NUDT12 nudix hydrolase 12 IEA Ensembl GO_REF:0000107 NCBI chr 2:109,044,946...109,059,721
Ensembl chr 2:109,044,948...109,059,624
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr14:48,156,835...48,204,701
Ensembl chr14:48,156,727...48,204,926
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein ISO (PMID:16364915) UniProtKB PMID:16364915 NCBI chr 6:48,063,732...48,066,235
Ensembl chr 6:48,052,137...48,066,257
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      organic substance metabolic process 10031
        macromolecule metabolic process 8715
          nucleic acid metabolic process 4490
            RNA metabolic process 4016
              RNA decapping 15
                NAD-cap decapping 2
                methylguanosine-cap decapping + 13
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      cellular metabolic process 9578
        cellular aromatic compound metabolic process 5111
          nucleobase-containing compound metabolic process 4911
            nucleic acid metabolic process 4490
              RNA metabolic process 4016
                RNA decapping 15
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.