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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 IGI
IMP
(MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chr 8:40,492,538...40,515,847
Ensembl chr 8:40,492,540...40,515,847
JBrowse link
G Dcp1a decapping mRNA 1A IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr14:30,479,486...30,527,056
Ensembl chr14:30,479,535...30,527,063
JBrowse link
G Dcp1b decapping mRNA 1B IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:119,175,253...119,221,614
Ensembl chr 6:119,175,253...119,221,616
JBrowse link
G Dcp2 decapping mRNA 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr18:44,380,500...44,424,969
Ensembl chr18:44,380,502...44,424,969
JBrowse link
G Dcps decapping enzyme, scavenger IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:35,124,414...35,175,987
Ensembl chr 9:35,124,408...35,176,061
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 8:25,785,318...25,803,975
Ensembl chr 8:25,785,288...25,803,975
JBrowse link
G Noct nocturnin IGI (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chr 3:51,224,447...51,251,654
Ensembl chr 3:51,224,447...51,251,644
JBrowse link
G Pan3 PAN3 poly(A) specific ribonuclease subunit IMP
IBA
(MGI:MGI:3807625|PMID:18625844)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18625844, PMID:21873635 MGI:MGI:3807625, MGI:MGI:6201960 NCBI chr 5:147,426,208...147,548,501
Ensembl chr 5:147,430,161...147,548,502
JBrowse link
G Patl1 protein associated with topoisomerase II homolog 1 (yeast) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr19:11,912,399...11,945,096
Ensembl chr19:11,912,399...11,945,091
JBrowse link
G Patl2 protein associated with topoisomerase II homolog 2 (yeast) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:122,120,108...122,186,189
Ensembl chr 2:122,120,108...122,186,189
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr14:30,479,486...30,527,056
Ensembl chr14:30,479,535...30,527,063
JBrowse link
G Dcp1b decapping mRNA 1B IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:119,175,253...119,221,614
Ensembl chr 6:119,175,253...119,221,616
JBrowse link
G Edc3 enhancer of mRNA decapping 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:57,708,540...57,750,163
Ensembl chr 9:57,708,540...57,752,499
JBrowse link
G Edc4 enhancer of mRNA decapping 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 8:105,880,873...105,893,225
Ensembl chr 8:105,880,881...105,894,908
JBrowse link
NAD-cap decapping term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease ISO
IBA
IDA
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:6368104|PMID:28283058)
MGI
GO_Central
UniProt
PMID:21873635, PMID:28283058 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960, MGI:MGI:6368104 NCBI chr17:34,836,996...34,839,187
Ensembl chr17:34,837,019...34,839,233
JBrowse link
G Nudt12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 ISO
IDA
(MGI:MGI:6368680|PMID:31101919) MGI
UniProt
PMID:31101919 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6368680 NCBI chr17:59,000,107...59,013,367
Ensembl chr17:58,999,618...59,013,372
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:3,202,343...3,244,588
Ensembl chr11:3,202,392...3,244,588
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:28,376,784...28,379,228
Ensembl chr 7:28,376,784...28,380,253
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      organic substance metabolic process 10756
        macromolecule metabolic process 9273
          nucleic acid metabolic process 4765
            RNA metabolic process 4271
              RNA decapping 16
                NAD-cap decapping 2
                methylguanosine-cap decapping + 14
Path 2
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      cellular metabolic process 10092
        cellular aromatic compound metabolic process 5437
          nucleobase-containing compound metabolic process 5205
            nucleic acid metabolic process 4765
              RNA metabolic process 4271
                RNA decapping 16
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.