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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 IEA InterPro GO_REF:0000002 NCBI chr27:43,840,190...43,961,067
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G CNOT7 CCR4-NOT transcription complex subunit 7 IEA Ensembl GO_REF:0000107 NCBI chr16:40,554,214...40,571,841
Ensembl chr16:40,555,565...40,571,720
JBrowse link
G DCP1A decapping mRNA 1A IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr20:36,597,457...36,661,362
Ensembl chr20:36,597,178...36,657,756
JBrowse link
G DCP1B decapping mRNA 1B IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr27:43,987,778...44,041,661
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G DCP2 decapping mRNA 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:35,256,772...35,298,974
Ensembl chr 4:35,256,970...35,299,021
JBrowse link
G DCPS decapping enzyme, scavenger IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:8,168,887...8,212,582
Ensembl chr 5:8,172,313...8,212,832
JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:27,304,257...27,315,389
Ensembl chr16:27,304,198...27,315,233
JBrowse link
G NOCT nocturnin IEA Ensembl GO_REF:0000107 NCBI chr19:3,587,769...3,612,184
Ensembl chr19:3,588,695...3,609,307
JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:11,416,321...11,550,830
Ensembl chr25:11,417,657...11,550,810
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:37,109,288...37,138,756
Ensembl chr18:37,109,410...37,137,156
JBrowse link
G PATL2 PAT1 homolog 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:11,306,972...11,316,454
Ensembl chr30:11,307,492...11,316,427
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:36,597,457...36,661,362
Ensembl chr20:36,597,178...36,657,756
JBrowse link
G DCP1B decapping mRNA 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:43,987,778...44,041,661
Ensembl chr27:43,844,529...44,041,637
JBrowse link
G EDC3 enhancer of mRNA decapping 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:37,720,063...37,770,948
Ensembl chr30:37,721,656...37,770,145
JBrowse link
G EDC4 enhancer of mRNA decapping 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:81,602,323...81,613,283
Ensembl chr 5:81,602,328...81,613,252
JBrowse link
NAD-cap decapping term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DXO decapping exoribonuclease IEA Ensembl GO_REF:0000107 NCBI chr12:1,424,584...1,426,275
Ensembl chr12:1,424,591...1,426,452
JBrowse link
G NUDT12 nudix hydrolase 12 IEA Ensembl GO_REF:0000107 NCBI chr 3:7,693,903...7,708,930
Ensembl chr 3:7,696,505...7,724,769
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chr26:24,355,326...24,403,306
Ensembl chr26:24,355,826...24,402,827
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein ISO (PMID:16364915) UniProtKB PMID:16364915 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      organic substance metabolic process 10133
        macromolecule metabolic process 8796
          nucleic acid metabolic process 4467
            RNA metabolic process 4002
              RNA decapping 17
                NAD-cap decapping 2
                methylguanosine-cap decapping + 15
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      cellular metabolic process 9650
        cellular aromatic compound metabolic process 5119
          nucleobase-containing compound metabolic process 4916
            nucleic acid metabolic process 4467
              RNA metabolic process 4002
                RNA decapping 17
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.