Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA decapping
go back to main search page
Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


GViewer not supported for chinchilla.
show annotations for term's descendants           Sort by:
 
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Noct nocturnin ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 ISO (MGI:MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:MGI:3807625 NCBI chrNW_004955497:7,500,478...7,646,541
Ensembl chrNW_004955497:7,500,748...7,647,255
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor ISO (PMID:20584987), (PMID:20852261) UniProtKB PMID:20584987, PMID:20852261 NCBI chrNW_004955511:4,090,841...4,119,077
Ensembl chrNW_004955511:4,092,257...4,119,077
JBrowse link
NAD-cap decapping term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease ISO (PMID:28283058), (PMID:31101919)
(MGI:MGI:6368104|PMID:28283058)
UniProt PMID:28283058, PMID:31101919 MGI:MGI:6368104 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Nudt12 nudix hydrolase 12 ISO (MGI:MGI:6368680|PMID:31101919)
(PMID:31101919)
UniProt PMID:31101919 MGI:MGI:6368680 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein ISO (PMID:16364915) UniProtKB PMID:16364915 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      organic substance metabolic process 7318
        macromolecule metabolic process 6345
          nucleic acid metabolic process 3276
            RNA metabolic process 2901
              RNA decapping 8
                NAD-cap decapping 2
                methylguanosine-cap decapping + 6
Path 2
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      cellular metabolic process 7027
        cellular aromatic compound metabolic process 3735
          nucleobase-containing compound metabolic process 3563
            nucleic acid metabolic process 3276
              RNA metabolic process 2901
                RNA decapping 8
                  NAD-cap decapping 2
                  methylguanosine-cap decapping + 6
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.