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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


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RNA decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT3 nudix hydrolase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,849,695...33,961,691
Ensembl chr 6:34,959,955...35,062,853 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNOT7 CCR4-NOT transcription complex subunit 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18625844) Ensembl
MGI		 PMID:18625844 GO_REF:0000107 NCBI chr 8:16,439,014...16,459,636
Ensembl chr 8:13,387,288...13,404,445 		JBrowse link
G DCP1A decapping mRNA 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:2,057,985...2,118,615
Ensembl chr12:2,007,406...2,065,141 		JBrowse link
G DCP2 decapping mRNA 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:108,333,091...108,377,119
Ensembl chr 5:114,144,999...114,172,480 		JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr11:121,119,720...121,159,513
Ensembl chr11:125,028,616...125,068,807 		JBrowse link
G LSM1 LSM1 homolog, mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:37,465,986...37,479,186
Ensembl chr 8:34,642,938...34,656,142 		JBrowse link
G NOCT nocturnin acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chr 4:131,378,656...131,409,711
Ensembl chr 4:142,691,169...142,719,514 		JBrowse link
G PAN3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) MGI PMID:18625844 NCBI chr13:9,420,405...9,579,859
Ensembl chr13:27,798,607...27,921,266 		JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:54,861,349...54,893,279
Ensembl chr11:58,311,235...58,342,561 		JBrowse link
G PATL2 PAT1 homolog 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:23,622,330...23,667,962
Ensembl chr15:41,790,682...41,801,825 		JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCP1B decapping mRNA 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:2,057,985...2,118,615
Ensembl chr12:2,007,406...2,065,141 		JBrowse link
G EDC3 enhancer of mRNA decapping 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:53,577,101...53,642,504
Ensembl chr15:73,196,823...73,262,214 		JBrowse link
G EDC4 enhancer of mRNA decapping 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:48,214,694...48,226,165
Ensembl chr16:67,601,515...67,613,012 		JBrowse link
mRNA methylguanosine-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCP1A decapping mRNA 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,231,318...53,291,890
Ensembl chr 3:54,449,980...54,514,267 		JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr11:121,119,720...121,159,513
Ensembl chr11:125,028,616...125,068,807 		JBrowse link
G NUDT12 nudix hydrolase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:98,903,740...98,917,763
Ensembl chr 5:104,601,373...104,617,925 		JBrowse link
NAD-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DXO decapping exoribonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566 		JBrowse link
G NUDT12 nudix hydrolase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:98,903,740...98,917,763
Ensembl chr 5:104,601,373...104,617,925 		JBrowse link
G NUDT16 nudix hydrolase 16 involved_in ISO (PMID:32432673) UniProt PMID:32432673 NCBI chr 3:128,466,119...128,473,186
Ensembl chr 3:135,788,354...135,790,038 		JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,463,859...12,515,953
Ensembl chr22:30,322,502...30,378,322 		JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:36,505,056...36,507,693
Ensembl chr19:45,052,801...45,055,390 		JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAPRIN1 cell cycle associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:34,023,981...34,079,335
Ensembl chr11:33,902,072...33,957,134 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16313
    metabolic process 10179
      primary metabolic process 8792
        nucleobase-containing compound metabolic process 4994
          nucleic acid metabolic process 4498
            RNA metabolic process 3942
              RNA decapping 19
                NAD-cap decapping 3
                mRNA methylguanosine-cap decapping + 16
Path 2
Term Annotations click to browse term
  biological_process 16313
    metabolic process 10179
      organic substance metabolic process 9739
        organic cyclic compound metabolic process 5446
          nucleobase-containing compound metabolic process 4994
            nucleic acid metabolic process 4498
              RNA metabolic process 3942
                RNA decapping 19
                  NAD-cap decapping 3
                  mRNA methylguanosine-cap decapping + 16
paths to the root