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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA decapping
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Accession:GO:0110154 term browser browse the term
Definition:Cleavage of the 5'-cap of an RNA.


show annotations for term's descendants           Sort by:
RNA decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt17 nudix hydrolase 17 involved_in ISO (PMID:23353937) RGD PMID:23353937 NCBI chr 2:186,930,305...186,932,797
Ensembl chr 2:186,930,305...186,932,797 		JBrowse link
G Nudt3 nudix hydrolase 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23353937)
(PMID:26932476), (PMID:32727897) 		UniProt
Ensembl
RGD		 PMID:23353937 PMID:26932476 PMID:32727897 GO_REF:0000024 GO_REF:0000107 NCBI chr20:5,634,345...5,686,950
Ensembl chr20:5,636,184...5,688,754 		JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 acts_upstream_of_or_within ISO (PMID:31439799) RGD PMID:31439799 NCBI chr 3:110,606,489...110,685,408
Ensembl chr 3:110,606,489...110,685,562 		JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:31439799)
GO_REF:0000107
MGI:109382 (PMID:18625844) 		RGD
Ensembl		 PMID:18625844 PMID:31439799 GO_REF:0000107 NCBI chr16:58,478,882...58,498,046
Ensembl chr16:58,478,900...58,498,046 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 acts_upstream_of_or_within ISO (PMID:31439799) RGD PMID:31439799 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr16:5,663,437...5,708,623
Ensembl chr16:5,663,203...5,708,618 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:154,030,181...154,068,038
Ensembl chr 4:154,030,690...154,068,035 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr18:37,001,615...37,037,949
Ensembl chr18:37,001,615...37,049,939 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033
GO_REF:0000104 		InterPro
GO_Central
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:41,729,507...41,782,222
Ensembl chr 8:41,724,563...41,782,222 		JBrowse link
G Epha4 Eph receptor A4 acts_upstream_of_or_within ISO (PMID:31439799) RGD PMID:31439799 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:86,263,982...86,406,755 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 acts_upstream_of_or_within ISO (PMID:31439799) RGD PMID:31439799 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:152,284,841...152,322,675 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:72,980,075...72,991,581
Ensembl chr16:72,979,686...73,022,396 		JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO
IEA 		MGI:1298230 (PMID:18625844)
GO_REF:0000107 		RGD
Ensembl		 PMID:18625844 GO_REF:0000107 NCBI chr 2:137,422,074...137,442,282
Ensembl chr 2:137,422,074...137,442,282 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) RGD PMID:18625844 NCBI chr12:12,512,835...12,637,066
Ensembl chr12:12,512,835...12,631,492 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
IEA
IBA
ISS 		(PMID:20584987), (PMID:20852261)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024 		RGD
Ensembl
GO_Central
InterPro
UniProt		 PMID:20584987 PMID:20852261 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:218,255,801...218,287,662
Ensembl chr 1:218,255,848...218,287,657 		JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:129,526,563...129,543,267
Ensembl chr 3:129,527,845...129,537,486 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000002
GO_REF:0000104 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:41,673,510...41,712,551 		JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,663,437...5,708,623
Ensembl chr16:5,663,203...5,708,618 		JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:154,030,181...154,068,038
Ensembl chr 4:154,030,690...154,068,035 		JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:67,002,032...67,047,563
Ensembl chr 8:67,002,014...67,047,559 		JBrowse link
G Edc4 enhancer of mRNA decapping 4 involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr19:33,774,062...33,786,054
Ensembl chr19:50,683,897...50,697,620 		JBrowse link
mRNA methylguanosine-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in ISO
IEA 		(PMID:12417715)
GO_REF:0000107 		RGD
Ensembl		 PMID:12417715 GO_REF:0000107 NCBI chr16:5,663,437...5,708,623
Ensembl chr16:5,663,203...5,708,618 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISO
IEA 		(PMID:26049109)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:26049109 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:41,729,507...41,782,222
Ensembl chr 8:41,724,563...41,782,222 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO
IEA 		(PMID:31875550)
GO_REF:0000107 		RGD
Ensembl		 PMID:31875550 GO_REF:0000107 NCBI chr 9:106,188,930...106,202,340
Ensembl chr 9:106,189,661...106,202,340 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000107
GO_REF:0000117 		Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:41,673,510...41,712,551 		JBrowse link
NAD-cap decapping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:28283058), (PMID:32374864)
GO_REF:0000033
(PMID:28283058), (PMID:31101919) 		UniProt
Ensembl
RGD
GO_Central		 PMID:28283058 PMID:31101919 PMID:32374864 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,997,955...4,000,037 		JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO
IEA 		(PMID:31101919), (PMID:31875550)
GO_REF:0000117
GO_REF:0000107
(PMID:31101919), (PMID:32432673) 		RGD
UniProt
Ensembl		 PMID:31101919 PMID:31875550 PMID:32432673 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:106,188,930...106,202,340
Ensembl chr 9:106,189,661...106,202,340 		JBrowse link
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:32432673) RGD PMID:32432673 NCBI chr 8:114,618,706...114,620,761
Ensembl chr 8:114,618,725...114,620,951 		JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO
IEA 		(PMID:32354837)
GO_REF:0000107 		RGD
Ensembl		 PMID:32354837 GO_REF:0000107 NCBI chr14:82,280,566...82,328,559
Ensembl chr14:82,280,748...82,323,242 		JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:16364915)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:16364915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:92,796,628...92,799,108 		JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:31439799) 		UniProt
Ensembl
RGD		 PMID:31439799 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:110,606,489...110,685,408
Ensembl chr 3:110,606,489...110,685,562 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      metabolic process 12252
        macromolecule metabolic process 10074
          nucleic acid metabolic process 5331
            RNA metabolic process 4729
              RNA decapping 24
                NAD-cap decapping 3
                mRNA methylguanosine-cap decapping + 20
Path 2
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      metabolic process 12252
        primary metabolic process 10845
          nucleobase-containing compound metabolic process 5964
            nucleic acid metabolic process 5331
              RNA metabolic process 4729
                RNA decapping 24
                  NAD-cap decapping 3
                  mRNA methylguanosine-cap decapping + 20
paths to the root