Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:DNA strand resection involved in replication fork processing
go back to main search page
Accession:GO:0110025 term browser browse the term
Definition:The 5' to 3' exonucleolytic resection of DNA at the site of a stalled replication fork that contributes to replication fork processing.


show annotations for term's descendants           Sort by:
DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BARD1 BRCA1 associated RING domain 1 involved_in NAS (PMID:29709199) ComplexPortal PMID:29709199 NCBI chr 2:214,725,646...214,809,683
Ensembl chr 2:214,725,646...214,809,683 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in NAS (PMID:29709199) ComplexPortal PMID:29709199 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245 		JBrowse link
G EXO1 exonuclease 1 involved_in IMP (PMID:26240375) UniProt PMID:26240375 NCBI chr 1:241,847,986...241,889,939
Ensembl chr 1:241,847,967...241,895,148 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in NAS
IDA
IEA		 (PMID:29709199)
(PMID:27814491), (PMID:27889449), (PMID:29670289), (PMID:30464262), (PMID:30612738), (PMID:30787182), (PMID:37696958)		 ComplexPortal
UniProt
Ensembl		 PMID:27814491 PMID:27889449 PMID:29670289 PMID:29709199 PMID:30464262 More... GO_REF:0000107 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885 		JBrowse link
G NBN nibrin involved_in NAS
IDA		 (PMID:29709199)
(PMID:27814491), (PMID:27889449), (PMID:30787182)		 ComplexPortal
UniProt		 PMID:27814491 PMID:27889449 PMID:29709199 PMID:30787182 NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in NAS
IDA		 (PMID:29709199)
(PMID:27889449)		 ComplexPortal
UniProt		 PMID:27889449 PMID:29709199 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in NAS
IDA		 (PMID:29709199)
(PMID:23273981), (PMID:27814491), (PMID:27889449), (PMID:30787182)		 ComplexPortal
UniProt		 PMID:23273981 PMID:27814491 PMID:27889449 PMID:29709199 PMID:30787182 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IDA (PMID:28834754), (PMID:29670289) UniProt PMID:28834754 PMID:29670289 NCBI chr20:36,889,773...36,951,708
Ensembl chr20:36,890,229...36,951,893 		JBrowse link
negative regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNLL1 dynein light chain LC8-type 1 involved_in IDA (PMID:30464262), (PMID:37696958) UniProt PMID:30464262 PMID:37696958 NCBI chr12:120,469,842...120,498,493
Ensembl chr12:120,469,850...120,498,493 		JBrowse link
regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZNF365 zinc finger protein 365 involved_in IMP
IBA		 (PMID:23966166) UniProt
GO_Central		 PMID:23966166 GO_REF:0000033 NCBI chr10:62,374,369...62,480,285
Ensembl chr10:62,374,192...62,480,288 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19789
    cellular process 18958
      metabolic process 13083
        macromolecule metabolic process 10944
          nucleic acid metabolic process 6065
            DNA metabolic process 1073
              DNA strand resection involved in replication fork processing 10
                negative regulation of DNA strand resection involved in replication fork processing 1
                positive regulation of DNA strand resection involved in replication fork processing 0
                regulation of DNA strand resection involved in replication fork processing + 2
Path 2
Term Annotations click to browse term
  biological_process 19789
    cellular process 18958
      metabolic process 13083
        primary metabolic process 11412
          nucleobase-containing compound metabolic process 6679
            nucleic acid metabolic process 6065
              DNA metabolic process 1073
                DNA replication 308
                  DNA-templated DNA replication 177
                    DNA-templated DNA replication maintenance of fidelity 60
                      replication fork processing 52
                        DNA strand resection involved in replication fork processing 10
                          negative regulation of DNA strand resection involved in replication fork processing 1
                          positive regulation of DNA strand resection involved in replication fork processing 0
                          regulation of DNA strand resection involved in replication fork processing + 2
paths to the root