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ONTOLOGY REPORT - ANNOTATIONS


Term:cell cortex region
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Accession:GO:0099738 term browser browse the term
Definition:The complete extent of cell cortex that underlies some some region of the plasma membrane.
Synonyms:exact_synonym: perimembrane region


show annotations for term's descendants           Sort by:
 
cell cortex region term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr1a actin related protein 1A ISO (PMID:22327364) RGD PMID:22327364 NCBI chr 1:266,123,864...266,142,621
Ensembl chr 1:266,123,870...266,142,538
JBrowse link
G Anln anillin, actin binding protein ISO (PMID:23870127) RGD PMID:23870127 NCBI chr 8:23,336,455...23,397,122
Ensembl chr 8:23,337,621...23,390,773
JBrowse link
G Ctsz cathepsin Z IDA
ISO
PMID:19433310
(PMID:19433310)
RGD PMID:19433310, PMID:19433310 RGD:12792998 NCBI chr 3:172,527,107...172,537,877
Ensembl chr 3:172,527,107...172,537,877
JBrowse link
G Dctn1 dynactin subunit 1 ISO
IEA
ISS
(PMID:22327364)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22327364 GO_REF:0000024, GO_REF:0000107 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Eno1 enolase 1 IDA
ISO
PMID:19433310
(PMID:19433310)
RGD PMID:19433310, PMID:19433310 RGD:12792998 NCBI chr 5:167,288,223...167,299,610
Ensembl chr 5:167,288,223...167,299,609
JBrowse link
G Eno2 enolase 2 IDA PMID:19433310 CAFA PMID:19433310 RGD:12792998 NCBI chr 4:157,285,192...157,294,090
Ensembl chr 4:157,285,179...157,294,047
JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 ISO (PMID:23870127) RGD PMID:23870127 NCBI chr 5:150,081,727...150,243,186
Ensembl chr 5:150,084,611...150,167,077
JBrowse link
G Epb41l2 erythrocyte membrane protein band 4.1-like 2 ISO (PMID:23870127) RGD PMID:23870127 NCBI chr 1:20,881,820...21,067,713
Ensembl chr 1:20,893,995...20,962,526
JBrowse link
G Gnai1 G protein subunit alpha i1 ISS
ISO
GO_REF:0000024
(PMID:22327364), (PMID:23870127)
UniProt
RGD
PMID:22327364, PMID:23870127 GO_REF:0000024 NCBI chr 4:13,405,136...13,486,866
Ensembl chr 4:13,405,136...13,485,883
JBrowse link
G Gpsm2 G-protein signaling modulator 2 ISO (PMID:22327364), (PMID:23870127) RGD PMID:22327364, PMID:23870127 NCBI chr 2:211,480,120...211,528,096
Ensembl chr 2:211,480,400...211,527,919
JBrowse link
G LOC100911625 gamma-enolase-like IDA PMID:19433310 CAFA PMID:19433310 RGD:12792998 NCBI chr 9:20,251,564...20,260,465
Ensembl chr 9:20,251,521...20,260,505
JBrowse link
G Myl12a myosin light chain 12A ISO (PMID:23870127) RGD PMID:23870127 NCBI chr 9:119,325,282...119,333,012
Ensembl chr 9:119,325,283...119,332,967
JBrowse link
G Myl12b myosin light chain 12B IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23870127)
Ensembl
UniProt
RGD
PMID:23870127 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:119,307,168...119,321,500
Ensembl chr 9:119,307,176...119,321,500
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 ISO (PMID:21816348), (PMID:22327364), (PMID:23870127), (PMID:23921553), (PMID:24371089), (PMID:24996901)
(MGI:5754878|PMID:26765568)
RGD PMID:21816348, PMID:22327364, PMID:23870127, PMID:23921553, PMID:24371089, PMID:24996901, PMID:26765568 MGI:5754878 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
apical cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07050543.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:168,845,058...168,845,415 JBrowse link
G Fabp1 fatty acid binding protein 1 IDA intestinal epithelial cells of fasted rats RGD PMID:10666570 RGD:1582399 NCBI chr 4:99,063,181...99,066,957
Ensembl chr 4:99,063,181...99,066,954
JBrowse link
G Fabp2 fatty acid binding protein 2 IDA RGD PMID:10666570 RGD:1582399 NCBI chr 2:227,080,912...227,083,654
Ensembl chr 2:227,080,924...227,083,501
JBrowse link
G Hamp hepcidin antimicrobial peptide IDA RGD PMID:15684344 RGD:1599359 NCBI chr 1:89,368,021...89,369,960
Ensembl chr 1:89,368,021...89,369,960
JBrowse link
G Insc INSC, spindle orientation adaptor protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:184,299,200...184,407,487
Ensembl chr 1:184,299,250...184,407,480
JBrowse link
G Khdc3 KH domain containing 3, subcortical maternal complex member IBA
ISO
PMID:21873635
(MGI:3771666|PMID:18057100)
RGD PMID:18057100, PMID:21873635 MGI:3771666, RGD:13792537 NCBI chr 8:79,781,941...79,783,845
Ensembl chr 8:79,781,983...79,783,592
JBrowse link
G Myo5b myosin Vb ISO
ISS
(PMID:21206382)
GO_REF:0000024
RGD
UniProt
PMID:21206382 GO_REF:0000024 NCBI chr18:70,426,865...70,729,985
Ensembl chr18:70,427,007...70,729,030
JBrowse link
G Nlrp5 NLR family, pyrin domain containing 5 ISO (MGI:3771666|PMID:18057100) RGD PMID:18057100 MGI:3771666 NCBI chr 1:71,452,184...71,490,915
Ensembl chr 1:71,453,798...71,486,790
JBrowse link
G Prkcz protein kinase C, zeta ISO (MGI:3582101|PMID:15950600) RGD PMID:15950600 MGI:3582101 NCBI chr 5:172,658,071...172,769,492
Ensembl chr 5:172,658,748...172,769,421
JBrowse link
G Sapcd2 suppressor APC domain containing 2 ISO (PMID:26766442)
(MGI:5882149|PMID:26766442)
RGD PMID:26766442 MGI:5882149 NCBI chr 3:2,590,355...2,597,283
Ensembl chr 3:2,591,331...2,596,583
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 ISO (MGI:3821785|PMID:18796539) RGD PMID:18796539 MGI:3821785 NCBI chr 3:111,833,411...111,875,551 JBrowse link
G Tchp trichoplein, keratin filament binding ISO (PMID:15731013) RGD PMID:15731013 NCBI chr12:47,638,278...47,653,602
Ensembl chr12:47,638,274...47,653,638
JBrowse link
basal cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO
IBA
(PMID:23940118)
PMID:21873635
RGD PMID:23940118, PMID:21873635 RGD:13792537 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
IBA
(PMID:23940118)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:23940118, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Gck glucokinase IDA preferentially localized in regions closest to blood vessels in pancreatic beta cells of fed, not fasted, rats RGD PMID:10071239 RGD:2301948 NCBI chr14:86,149,146...86,191,589
Ensembl chr14:86,148,928...86,190,659
JBrowse link
G Mark2 microtubule affinity regulating kinase 2 ISO (MGI:3582101|PMID:15950600) RGD PMID:15950600 MGI:3582101 NCBI chr 1:222,525,547...222,590,727
Ensembl chr 1:222,525,990...222,590,220
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:23940118)
Ensembl
RGD
PMID:23940118, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO
IBA
(PMID:23940118)
PMID:21873635
RGD PMID:23940118, PMID:21873635 RGD:13792537 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:10770959)
(MGI:4942265|PMID:10770959)
RGD PMID:10770959 MGI:4942265 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
cytoskeleton of presynaptic active zone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsn bassoon (presynaptic cytomatrix protein) IDA
IBA
PMID:21873635
PMID:9679147
RGD
GO_Central
SynGO-UCL
PMID:11596050, PMID:21873635, PMID:9679147 RGD:9850129, RGD:13792537, RGD:69780 NCBI chr 8:116,873,721...116,965,396
Ensembl chr 8:116,873,721...116,965,396
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11596050, PMID:21873635 RGD:9850129, RGD:13792537 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:28,440,408...28,973,246
Ensembl chr 9:28,442,229...28,973,246
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:78,091,998...78,594,164
Ensembl chr 7:78,092,037...78,594,138
JBrowse link
G Rims3 regulating synaptic membrane exocytosis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:139,790,395...139,819,014
Ensembl chr 5:139,783,951...139,819,016
JBrowse link
lateral cell cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpsm2 G-protein signaling modulator 2 ISO (PMID:26766442)
(MGI:5882149|PMID:26766442)
RGD PMID:26766442 MGI:5882149 NCBI chr 2:211,480,120...211,528,096
Ensembl chr 2:211,480,400...211,527,919
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 ISO (MGI:5882149|PMID:26766442) RGD PMID:26766442 MGI:5882149 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
postsynaptic endocytic zone cytoplasmic component term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A IBA
ISO
PMID:21873635
(MGI:5819350|PMID:17880892)
RGD PMID:17880892, PMID:21873635 MGI:5819350, RGD:13792537 NCBI chr 5:59,490,689...59,509,139
Ensembl chr 5:59,491,096...59,509,138
JBrowse link
G Cltb clathrin, light chain B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:10,537,348...10,554,999
Ensembl chr17:10,537,365...10,554,989
JBrowse link
presynaptic active zone cytoplasmic component term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsn bassoon (presynaptic cytomatrix protein) IEA
ISO
IDA
GO_REF:0000107
(MGI:5816444|PMID:21144999)
PMID:9679147
PMID:10340516
Ensembl
RGD
PMID:21144999, PMID:9679147, PMID:10340516 GO_REF:0000107, MGI:5816444, RGD:69780, RGD:13702152 NCBI chr 8:116,873,721...116,965,396
Ensembl chr 8:116,873,721...116,965,396
JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO (MGI:6189269|PMID:22745816) RGD PMID:22745816 MGI:6189269 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319
JBrowse link
G Ctbp2 C-terminal binding protein 2 ISO (MGI:6189269|PMID:22745816) RGD PMID:22745816 MGI:6189269 NCBI chr 1:205,001,354...205,030,565
Ensembl chr 1:205,001,396...205,040,755
JBrowse link
G Ctnna2 catenin alpha 2 ISO (MGI:83903|PMID:8909549) RGD PMID:8909549 MGI:83903 NCBI chr 4:107,880,611...109,042,724
Ensembl chr 4:107,881,826...108,008,484
JBrowse link
G Ctnnb1 catenin beta 1 IEA
ISO
GO_REF:0000107
(MGI:83903|PMID:8909549)
Ensembl
RGD
PMID:8909549 GO_REF:0000107, MGI:83903 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ctnnd1 catenin delta 1 IDA PMID:12727444 SynGO PMID:12727444 RGD:2316208 NCBI chr 3:72,001,904...72,053,047
Ensembl chr 3:72,002,152...72,053,049
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 IDA PMID:12391317 SynGO PMID:12391317 RGD:632516 NCBI chr 4:152,087,393...152,380,023
Ensembl chr 4:152,087,379...152,380,184
JBrowse link
G Erc2 ELKS/RAB6-interacting/CAST family member 2 IDA
ISO
PMID:12391317
(MGI:6120581|PMID:29439199)
RGD PMID:29439199, PMID:12391317 MGI:6120581, RGD:632516 NCBI chr16:3,258,580...4,283,592
Ensembl chr16:3,293,599...3,679,222
JBrowse link
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 IDA PMID:12388603 SynGO PMID:12388603 RGD:12050093 NCBI chr 2:180,976,939...181,026,001
Ensembl chr 2:180,976,939...181,026,024
JBrowse link
G Iqsec2 IQ motif and Sec7 domain ArfGEF 2 ISO (MGI:6189645|PMID:19811534) RGD PMID:19811534 MGI:6189645 NCBI chr  X:22,212,137...22,293,810
Ensembl chr  X:22,212,132...22,294,402
JBrowse link
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 IDA PMID:21179518 SynGO PMID:21179518 RGD:4892203 NCBI chr19:34,408,275...34,761,003
Ensembl chr19:34,448,289...34,752,695
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) IDA
ISO
PMID:21712437
(MGI:5816444|PMID:21144999)
RGD PMID:21144999, PMID:21712437 MGI:5816444, RGD:9850098 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
G Ppfia3 PTPRF interacting protein alpha 3 ISO (MGI:6120581|PMID:29439199) RGD PMID:29439199 MGI:6120581 NCBI chr 1:101,328,547...101,357,391
Ensembl chr 1:101,327,998...101,351,879
JBrowse link
G Rimbp2 RIMS binding protein 2 ISO (MGI:5822951|PMID:27671655) RGD PMID:27671655 MGI:5822951 NCBI chr12:31,393,229...31,605,567
Ensembl chr12:31,530,699...31,620,760
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 IDA
ISO
IBA
PMID:27462810
(MGI:5816444|PMID:21144999), (MGI:6189473|PMID:27537483)
PMID:9252191
PMID:21873635
RGD PMID:21144999, PMID:27537483, PMID:27462810, PMID:9252191, PMID:21873635 MGI:5816444, MGI:6189473, RGD:13702367, RGD:633897, RGD:13792537 NCBI chr 9:28,440,408...28,973,246
Ensembl chr 9:28,442,229...28,973,246
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 IBA
IDA
PMID:21873635
PMID:9252191
GO_Central
SynGO
PMID:21873635, PMID:9252191 RGD:13792537, RGD:633897 NCBI chr 7:78,091,998...78,594,164
Ensembl chr 7:78,092,037...78,594,138
JBrowse link
G Rims3 regulating synaptic membrane exocytosis 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:139,790,395...139,819,014
Ensembl chr 5:139,783,951...139,819,016
JBrowse link
G Unc13a unc-13 homolog A IDA
IBA
PMID:21712437
PMID:21873635
SynGO
GO_Central
PMID:21712437, PMID:21873635 RGD:9850098, RGD:13792537 NCBI chr16:20,056,398...20,103,951
Ensembl chr16:20,056,765...20,097,287
JBrowse link
G Unc13b unc-13 homolog B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:58,505,449...58,714,396
Ensembl chr 5:58,505,500...58,715,576
JBrowse link
G Unc13c unc-13 homolog C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:80,202,736...80,656,363
Ensembl chr 8:80,203,609...80,631,926
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      cell periphery 6467
        cell cortex 353
          cell cortex region 55
            anterior cell cortex 0
            apical cortex + 12
            basal cortex 7
            cell cortex of cell tip + 0
            cell leading edge cell cortex 0
            equatorial cell cortex 0
            lateral cell cortex + 2
            medial cortex + 0
            posterior cell cortex 0
            postsynaptic endocytic zone cytoplasmic component 2
            presynaptic active zone cytoplasmic component + 20
            presynaptic endocytic zone cytoplasmic component 0
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      intracellular anatomical structure 14638
        cytoplasm 11463
          cytoplasmic region 295
            cell cortex region 55
              anterior cell cortex 0
              apical cortex + 12
              basal cortex 7
              cell cortex of cell tip + 0
              cell leading edge cell cortex 0
              equatorial cell cortex 0
              lateral cell cortex + 2
              medial cortex + 0
              posterior cell cortex 0
              postsynaptic endocytic zone cytoplasmic component 2
              presynaptic active zone cytoplasmic component + 20
              presynaptic endocytic zone cytoplasmic component 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.