Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:modification of synaptic structure
go back to main search page
Accession:GO:0099563 term browser browse the term
Definition:Any process that modifies the structure/morphology of a synapse.
Comment:This class does not cover assembly or disassembly of synapses, only the modification/remodelling of existing ones.
Synonyms:exact_synonym: synapse remodelling
 only_in_taxon: NCBITaxon:33208 ! Metazoa


show annotations for term's descendants           Sort by:
modification of synaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pgrmc1 progesterone receptor membrane component 1 involved_in IGI PMID:25390368 ARUK-UCL PMID:25390368 RGD:12910997 NCBI chr  X:120,698,610...120,706,805
Ensembl chr  X:115,832,884...115,888,682 		JBrowse link
G Rest RE1-silencing transcription factor involved_in IMP PMID:22960932 UniProt PMID:22960932 RGD:14397585 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
modification of postsynaptic actin cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3 ABI family, member 3 involved_in IDA
IEP
IMP		 PMID:22485184 SynGO PMID:22485184 PMID:22485184 PMID:22485184 RGD:42721990, RGD:42721990, RGD:42721990 NCBI chr10:80,769,819...80,780,816
Ensembl chr10:80,769,822...80,780,816 		JBrowse link
G Cabp1 calcium binding protein 1 involved_in ISO (PMID:29478916) RGD PMID:29478916 NCBI chr12:47,045,914...47,109,614
Ensembl chr12:41,378,897...41,448,927 		JBrowse link
G Cap1 cyclase associated actin cytoskeleton regulatory protein 1 involved_in ISO
IEA		 (PMID:36264429)
GO_REF:0000107		 RGD
Ensembl		 PMID:36264429 GO_REF:0000107 NCBI chr 5:135,142,108...135,168,885
Ensembl chr 5:135,142,112...135,168,769 		JBrowse link
G Cfl1 cofilin 1 involved_in IDA
EXP		 PMID:16025109 SynGO PMID:16025109 PMID:16025109 RGD:13702428, RGD:13702428 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Ctnna2 catenin alpha 2 involved_in ISO (PMID:15034585) RGD PMID:15034585 NCBI chr 4:109,294,249...110,443,409
Ensembl chr 4:109,293,978...110,443,522 		JBrowse link
G Cttn cortactin involved_in IDA
IMP		 PMID:14684878 SynGO PMID:14684878 PMID:14684878 RGD:13702237, RGD:13702237 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164 		JBrowse link
G Dixdc1 DIX domain containing 1 involved_in ISO
IEA		 (PMID:27829159)
GO_REF:0000107		 RGD
Ensembl		 PMID:27829159 GO_REF:0000107 NCBI chr 8:51,007,835...51,081,191
Ensembl chr 8:51,007,838...51,081,090 		JBrowse link
G Itpka inositol-trisphosphate 3-kinase A involved_in IMP
IEP
IDA		 PMID:19890013 SynGO PMID:19890013 PMID:19890013 PMID:19890013 RGD:8553536, RGD:8553536, RGD:8553536 NCBI chr 3:106,726,036...106,734,601
Ensembl chr 3:106,726,036...106,734,600 		JBrowse link
G Pfn1 profilin 1 involved_in ISO (PMID:26951674) RGD PMID:26951674 NCBI chr10:55,365,263...55,367,968
Ensembl chr10:55,365,262...55,527,631 		JBrowse link
G Pfn2 profilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26951674)		 Ensembl
RGD		 PMID:26951674 GO_REF:0000107 NCBI chr 2:142,067,102...142,072,938
Ensembl chr 2:142,067,104...142,072,938 		JBrowse link
G Sptb spectrin, beta, erythrocytic involved_in ISO
IEA		 (PMID:21297961)
GO_REF:0000107		 RGD
Ensembl		 PMID:21297961 GO_REF:0000107 NCBI chr 6:95,310,342...95,437,221
Ensembl chr 6:95,310,326...95,437,118 		JBrowse link
G Wasf1 WASP family member 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16862120)		 Ensembl
RGD		 PMID:16862120 GO_REF:0000107 NCBI chr20:45,908,458...45,956,118
Ensembl chr20:44,325,795...44,372,996 		JBrowse link
G Wasf3 WASP family member 3 involved_in ISO
IEA		 (PMID:16190876)
GO_REF:0000107		 RGD
Ensembl		 PMID:16190876 GO_REF:0000107 NCBI chr12:8,563,805...8,660,799
Ensembl chr12:8,562,062...8,660,751 		JBrowse link
modification of postsynaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap44 Rho GTPase activating protein 44 involved_in ISO
IEA		 (PMID:23739967)
GO_REF:0000107		 RGD
Ensembl		 PMID:23739967 GO_REF:0000107 NCBI chr10:50,154,724...50,322,027
Ensembl chr10:49,655,584...49,824,297 		JBrowse link
G Cttn cortactin involved_in IMP
IDA		 PMID:14684878 SynGO PMID:14684878 PMID:14684878 RGD:13702237, RGD:13702237 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164 		JBrowse link
G Dlgap3 DLG associated protein 3 involved_in ISO
IEA		 (PMID:17713528)
GO_REF:0000107		 RGD
Ensembl		 PMID:17713528 GO_REF:0000107 NCBI chr 5:139,491,972...139,562,625
Ensembl chr 5:139,492,947...139,562,625 		JBrowse link
G Dlgap4 DLG associated protein 4 involved_in ISO
IEA		 (PMID:30664629)
GO_REF:0000107		 RGD
Ensembl		 PMID:30664629 GO_REF:0000107 NCBI chr 3:145,124,189...145,271,791
Ensembl chr 3:145,175,479...145,270,490 		JBrowse link
G Drd1 dopamine receptor D1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25258080)		 Ensembl
RGD		 PMID:25258080 GO_REF:0000107 NCBI chr17:10,545,488...10,550,029
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Filip1 filamin A interacting protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25220605)		 Ensembl
RGD		 PMID:25220605 GO_REF:0000107 NCBI chr 8:80,761,283...80,956,556
Ensembl chr 8:80,764,604...80,922,549 		JBrowse link
G Rap1b RAP1B, member of RAS oncogene family involved_in ISO (PMID:26844834) RGD PMID:26844834 NCBI chr 7:53,423,039...53,456,349
Ensembl chr 7:53,423,130...53,456,370 		JBrowse link
G Sarm1 sterile alpha and TIR motif containing 1 involved_in IMP
IDA		 PMID:21555464 SynGO PMID:21555464 PMID:21555464 RGD:405650273, RGD:405650273 NCBI chr10:63,369,456...63,393,016
Ensembl chr10:63,369,456...63,392,822 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in IMP
IDA		 PMID:21635779 SynGO PMID:21635779 PMID:21635779 RGD:13792519, RGD:13792519 NCBI chr 3:155,680,000...155,725,969
Ensembl chr 3:155,680,000...155,725,909 		JBrowse link
modification of synaptic structure, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp9 matrix metallopeptidase 9 involved_in IDA
EXP		 PMID:19047646 SynGO PMID:19047646 PMID:19047646 RGD:405650393, RGD:405650393 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
regulation of modification of postsynaptic actin cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin involved_in IDA
IMP		 PMID:29317530 SynGO PMID:29317530 PMID:29317530 RGD:405650325, RGD:405650325 NCBI chr  X:108,982,399...109,041,265
Ensembl chr  X:108,984,022...109,041,272 		JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 involved_in IMP
IDA		 PMID:15673667 SynGO PMID:15673667 PMID:15673667 RGD:9684988, RGD:9684988 NCBI chr10:105,721,371...105,788,549
Ensembl chr10:105,223,090...105,290,134 		JBrowse link
G Cap2 cyclase associated actin cytoskeleton regulatory protein 2 involved_in IMP
IDA		 PMID:33094279 SynGO PMID:33094279 PMID:33094279 RGD:405650308, RGD:405650308 NCBI chr17:18,054,234...18,203,453
Ensembl chr17:18,054,431...18,203,373 		JBrowse link
G Cttnbp2 cortactin binding protein 2 involved_in IMP
IDA		 PMID:22262902 SynGO PMID:22262902 PMID:22262902 RGD:13702362, RGD:13702362 NCBI chr 4:46,800,975...46,964,681
Ensembl chr 4:46,800,981...46,964,631 		JBrowse link
G Cyfip1 cytoplasmic FMR1 interacting protein 1 involved_in ISO (PMID:24050404) RGD PMID:24050404 NCBI chr 1:115,842,754...115,935,163
Ensembl chr 1:106,711,016...106,799,386 		JBrowse link
G Dip2a disco-interacting protein 2 homolog A involved_in ISO (PMID:31600191) RGD PMID:31600191 NCBI chr20:12,284,566...12,371,068
Ensembl chr20:12,284,654...12,370,217 		JBrowse link
G Itsn1 intersectin 1 involved_in IDA
IMP		 PMID:19258322 SynGO PMID:19258322 PMID:19258322 RGD:13461864, RGD:13461864 NCBI chr11:30,978,590...31,160,645
Ensembl chr11:30,978,590...31,160,645 		JBrowse link
G Kalrn kalirin, RhoGEF kinase involved_in IDA
IMP		 PMID:18031682 SynGO PMID:18031682 PMID:18031682 RGD:12050112, RGD:12050112 NCBI chr11:79,703,345...80,309,210
Ensembl chr11:66,198,173...66,797,610 		JBrowse link
G Limk1 LIM domain kinase 1 involved_in IDA
IMP		 PMID:25884247 SynGO PMID:25884247 PMID:25884247 RGD:405650283, RGD:405650283 NCBI chr12:22,026,697...22,060,605
Ensembl chr12:22,026,672...22,060,606 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate involved_in IDA
IMP		 PMID:16202710 SynGO PMID:16202710 PMID:16202710 RGD:9685333, RGD:9685333 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012 		JBrowse link
G Myh10 myosin heavy chain 10 involved_in IDA
IMP		 PMID:20797537 SynGO PMID:20797537 PMID:20797537 RGD:12050124, RGD:12050124 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Prmt8 protein arginine methyltransferase 8 involved_in ISO (PMID:32521269) RGD PMID:32521269 NCBI chr 4:160,535,813...160,618,193
Ensembl chr 4:160,535,813...160,617,930 		JBrowse link
G Ptk2 protein tyrosine kinase 2 involved_in ISO (PMID:19553453) RGD PMID:19553453 NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO
IEA		 (PMID:21423166)
GO_REF:0000107		 RGD
Ensembl		 PMID:21423166 GO_REF:0000107 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 involved_in IMP
IDA		 PMID:15721239 SynGO PMID:15721239 PMID:15721239 RGD:12050147, RGD:12050147 NCBI chr11:42,517,527...42,866,280
Ensembl chr11:29,031,348...29,159,901 		JBrowse link
regulation of modification of postsynaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 involved_in IMP
IDA		 PMID:27713690 SynGO PMID:27713690 PMID:27713690 RGD:405650302, RGD:405650302 NCBI chr 9:90,039,720...90,475,196
Ensembl chr 9:90,039,605...90,470,958 		JBrowse link
G Ank3 ankyrin 3 involved_in IMP
IDA		 PMID:25374361 SynGO PMID:25374361 PMID:25374361 RGD:405650220, RGD:405650220 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300 		JBrowse link
G Camkv CaM kinase-like vesicle-associated involved_in IEA
ISO		 GO_REF:0000107
(PMID:27796283)		 Ensembl
RGD		 PMID:27796283 GO_REF:0000107 NCBI chr 8:108,626,821...108,641,169
Ensembl chr 8:108,626,821...108,641,169 		JBrowse link
G Cd44 CD44 molecule involved_in EXP
IDA
IMP		 PMID:27798233 SynGO PMID:27798233 PMID:27798233 PMID:27798233 RGD:405650378, RGD:405650378, RGD:405650378 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cdc42 cell division cycle 42 involved_in IMP
IDA		 PMID:21423166 SynGO PMID:21423166 PMID:21423166 RGD:5688281, RGD:5688281 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IMP
IDA		 PMID:25698751 SynGO PMID:25698751 PMID:25698751 RGD:13702150, RGD:13702150 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 involved_in ISO (PMID:26972007) RGD PMID:26972007 NCBI chr19:52,867,900...52,907,308
Ensembl chr19:52,869,486...52,907,777 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in IMP
IDA		 PMID:23864697 SynGO PMID:23864697 PMID:23864697 RGD:13702314, RGD:13702314 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Mrtfa myocardin related transcription factor A involved_in IMP
IDA		 PMID:29335431 SynGO PMID:29335431 PMID:29335431 RGD:405650348, RGD:405650348 NCBI chr 7:112,544,305...112,714,418
Ensembl chr 7:112,544,312...112,714,418 		JBrowse link
G Mrtfb myocardin related transcription factor B involved_in IMP
IDA		 PMID:29335431 SynGO PMID:29335431 PMID:29335431 RGD:405650348, RGD:405650348 NCBI chr10:1,116,315...1,278,106
Ensembl chr10:1,116,310...1,277,897 		JBrowse link
G Myo5b myosin Vb involved_in IDA
IMP		 PMID:18984164 SynGO PMID:18984164 PMID:18984164 RGD:11533643, RGD:11533643 NCBI chr18:68,038,759...68,341,568
Ensembl chr18:68,038,759...68,338,745 		JBrowse link
G Nf1 neurofibromin 1 involved_in IDA
EXP
IMP		 PMID:24431436 SynGO PMID:24431436 PMID:24431436 PMID:24431436 RGD:155230796, RGD:155230796, RGD:155230796 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Pdxp pyridoxal phosphatase involved_in ISO
IEA		 (PMID:27212638)
GO_REF:0000107		 RGD
Ensembl		 PMID:27212638 GO_REF:0000107 NCBI chr 7:110,472,515...110,477,963
Ensembl chr 7:110,472,515...110,477,963 		JBrowse link
G Phactr1 phosphatase and actin regulator 1 involved_in IMP
IDA		 PMID:32975518 SynGO PMID:32975518 PMID:32975518 RGD:405650326, RGD:405650326 NCBI chr17:21,560,364...22,040,166
Ensembl chr17:21,562,721...22,039,831 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (PMID:26490870) RGD PMID:26490870 NCBI chr 2:164,207,513...164,322,157
Ensembl chr 2:164,207,513...164,244,247 		JBrowse link
G Rhoa ras homolog family member A involved_in ISO
IEA		 (PMID:21423166)
GO_REF:0000107		 RGD
Ensembl		 PMID:21423166 GO_REF:0000107 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rhob ras homolog family member B involved_in ISO
IEA		 (PMID:20203211)
GO_REF:0000107		 RGD
Ensembl		 PMID:20203211 GO_REF:0000107 NCBI chr 6:31,363,752...31,365,926
Ensembl chr 6:31,363,548...31,366,108 		JBrowse link
G Strn striatin involved_in IMP
IDA		 PMID:29802198 SynGO PMID:29802198 PMID:29802198 RGD:405650211, RGD:405650211 NCBI chr 6:16,335,265...16,422,159
Ensembl chr 6:16,335,358...16,417,083 		JBrowse link
G Strn4 striatin 4 involved_in IDA
IMP		 PMID:28442576 SynGO PMID:28442576 PMID:28442576 RGD:405650263, RGD:405650263 NCBI chr 1:77,482,267...77,511,862
Ensembl chr 1:77,482,094...77,511,858 		JBrowse link
regulation of modification of synapse structure, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif5b kinesin family member 5B involved_in ISO
IEA		 (PMID:31961321)
GO_REF:0000107		 RGD
Ensembl		 PMID:31961321 GO_REF:0000107 NCBI chr17:51,489,904...51,527,508
Ensembl chr17:51,489,944...51,527,508 		JBrowse link
G Zdhhc17 zinc finger DHHC-type palmitoyltransferase 17 involved_in ISO
IEA		 (PMID:24277827)
GO_REF:0000107		 RGD
Ensembl		 PMID:24277827 GO_REF:0000107 NCBI chr 7:46,369,963...46,433,691
Ensembl chr 7:46,369,988...46,433,764 		JBrowse link
regulation of modification of synaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IGI
IEA
ISO		 PMID:24658113
GO_REF:0000107
ComplexPortal:CPX-1134|UniProtKB:Q03137 (PMID:24658113)		 Ensembl
RGD		 PMID:24658113 PMID:24658113 GO_REF:0000107, RGD:12911004 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:29780879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29780879 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Epha4 Eph receptor A4 involved_in IGI
IEA
ISO		 PMID:24658113
GO_REF:0000107
ComplexPortal:CPX-1134|UniProtKB:P00520 (PMID:24658113)		 Ensembl
RGD		 PMID:24658113 PMID:24658113 GO_REF:0000107, RGD:12911004 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      cellular component organization or biogenesis 7104
        cellular component organization 6817
          cell junction organization 988
            synapse organization 709
              modification of synaptic structure 62
                modification of postsynaptic structure + 54
                modification of synaptic structure, modulating synaptic transmission 1
                regulation of modification of synaptic structure + 38
paths to the root