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ONTOLOGY REPORT - ANNOTATIONS


Term:modification of synaptic structure
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Accession:GO:0099563 term browser browse the term
Definition:Any process that modifies the structure/morphology of a synapse.
Comment:This class does not cover assembly or disassembly of synapses, only the modification/remodelling of existing ones.
Synonyms:exact_synonym: synapse remodelling



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modification of synaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in IBA
IMP
PMID:21873635
PMID:21423166
GO_Central
SynGO
PMID:21873635 PMID:21423166 RGD:13792537, RGD:5688281 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Cyfip1 cytoplasmic FMR1 interacting protein 1 involved_in IBA
ISO
PMID:21873635
(MGI:5515833|PMID:24050404)
RGD PMID:24050404 PMID:21873635 MGI:5515833, RGD:13792537 NCBI chr 1:106,710,924...106,799,393
Ensembl chr 1:106,711,016...106,799,386
JBrowse link
G Dlgap3 DLG associated protein 3 involved_in IEA
ISO
GO_REF:0000107
(MGI:3757807|PMID:17713528)
Ensembl
RGD
PMID:17713528 GO_REF:0000107 MGI:3757807 NCBI chr 5:139,491,972...139,562,625
Ensembl chr 5:139,492,947...139,562,625
JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 involved_in IGI PMID:25390368 ARUK-UCL PMID:25390368 RGD:12910997 NCBI chr  X:115,832,865...115,841,060
Ensembl chr  X:115,832,884...115,888,682
JBrowse link
G Rest RE1-silencing transcription factor involved_in IMP PMID:22960932 UniProt PMID:22960932 RGD:14397585 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
modification of dendritic spine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap44 Rho GTPase activating protein 44 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5498598|PMID:23739967)
GO_REF:0000107
RGD
Ensembl
PMID:23739967 PMID:21873635 GO_REF:0000107 MGI:5498598, RGD:13792537 NCBI chr10:49,655,583...49,822,876
Ensembl chr10:49,655,584...49,824,297
JBrowse link
G Synpo synaptopodin involved_in ISO
IEA
IBA
(PMID:25164660)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:25164660 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr18:54,048,299...54,106,388
Ensembl chr18:54,026,152...54,102,126
JBrowse link
modification of postsynaptic actin cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cabp1 calcium binding protein 1 involved_in ISO (MGI:6150592|PMID:29478916) RGD PMID:29478916 MGI:6150592 NCBI chr12:41,385,234...41,448,930
Ensembl chr12:41,378,897...41,448,927
JBrowse link
G Cfl1 cofilin 1 involved_in IDA
EXP
PMID:16025109 SynGO PMID:16025109 PMID:16025109 RGD:13702428, RGD:13702428 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
JBrowse link
G Ctnna2 catenin alpha 2 involved_in ISO (MGI:3628965|PMID:15034585) RGD PMID:15034585 MGI:3628965 NCBI chr 4:109,293,978...110,443,413
Ensembl chr 4:109,293,978...110,443,522
JBrowse link
G Cttn cortactin involved_in IDA
IMP
IC
PMID:14684878
GO_REF:0000036
SynGO PMID:14684878 PMID:14684878 GO_REF:0000036, RGD:13702237, RGD:13702237 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164
JBrowse link
G Kalrn kalirin, RhoGEF kinase involved_in IMP PMID:18031682 SynGO PMID:18031682 RGD:12050112 NCBI chr11:66,198,155...66,803,166
Ensembl chr11:66,198,173...66,797,610
JBrowse link
G Myh10 myosin heavy chain 10 involved_in IMP PMID:20797537 SynGO PMID:20797537 RGD:12050124 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Pfn1 profilin 1 involved_in ISO (MGI:5766825|PMID:26951674) RGD PMID:26951674 MGI:5766825 NCBI chr10:55,365,263...55,367,968
Ensembl chr10:55,365,262...55,527,631
JBrowse link
G Pfn2 profilin 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5766825|PMID:26951674)
Ensembl
RGD
PMID:26951674 GO_REF:0000107 MGI:5766825 NCBI chr 2:142,067,102...142,072,938
Ensembl chr 2:142,067,104...142,072,938
JBrowse link
G Wasf1 WASP family member 1 involved_in ISO (MGI:6189313|PMID:16862120) RGD PMID:16862120 MGI:6189313 NCBI chr20:44,325,815...44,372,999
Ensembl chr20:44,325,795...44,372,996
JBrowse link
G Wasf3 WASP family member 3 involved_in ISO (MGI:6189418|PMID:16190876) RGD PMID:16190876 MGI:6189418 NCBI chr12:8,563,805...8,660,799
Ensembl chr12:8,562,062...8,660,751
JBrowse link
modification of postsynaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap44 Rho GTPase activating protein 44 involved_in ISO (MGI:5498598|PMID:23739967) RGD PMID:23739967 MGI:5498598 NCBI chr10:49,655,583...49,822,876
Ensembl chr10:49,655,584...49,824,297
JBrowse link
G Drd1 dopamine receptor D1 involved_in ISO (MGI:6189461|PMID:25258080) RGD PMID:25258080 MGI:6189461 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Filip1 filamin A interacting protein 1 involved_in ISO (MGI:6152572|PMID:25220605) RGD PMID:25220605 MGI:6152572 NCBI chr 8:80,761,283...80,956,556
Ensembl chr 8:80,764,604...80,922,549
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in IMP
IDA
PMID:21635779 SynGO PMID:21635779 PMID:21635779 RGD:13792519, RGD:13792519 NCBI chr 3:155,680,000...155,725,969
Ensembl chr 3:155,680,000...155,725,909
JBrowse link
modification of synaptic structure, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap2 BAR/IMD domain containing adaptor protein 2 involved_in ISO (MGI:3832997|PMID:19193906) RGD PMID:19193906 MGI:3832997 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134
JBrowse link
regulation of modification of postsynaptic actin cytoskeleton term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap2 BAR/IMD domain containing adaptor protein 2 involved_in IMP
IDA
PMID:15673667 SynGO PMID:15673667 PMID:15673667 RGD:9684988, RGD:9684988 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134
JBrowse link
G Cttnbp2 cortactin binding protein 2 involved_in IMP
IDA
PMID:22262902 SynGO PMID:22262902 PMID:22262902 RGD:13702362, RGD:13702362 NCBI chr 4:46,800,975...46,964,681
Ensembl chr 4:46,800,981...46,964,631
JBrowse link
G Cyfip1 cytoplasmic FMR1 interacting protein 1 involved_in ISO (MGI:5515833|PMID:24050404) RGD PMID:24050404 MGI:5515833 NCBI chr 1:106,710,924...106,799,393
Ensembl chr 1:106,711,016...106,799,386
JBrowse link
G Itsn1 intersectin 1 involved_in IDA
IMP
PMID:19258322 SynGO PMID:19258322 PMID:19258322 RGD:13461864, RGD:13461864 NCBI chr11:30,978,590...31,160,645
Ensembl chr11:30,978,590...31,160,645
JBrowse link
G Kalrn kalirin, RhoGEF kinase involved_in IDA
IMP
PMID:18031682 SynGO PMID:18031682 PMID:18031682 RGD:12050112, RGD:12050112 NCBI chr11:66,198,155...66,803,166
Ensembl chr11:66,198,173...66,797,610
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate involved_in IDA
IMP
PMID:16202710 SynGO PMID:16202710 PMID:16202710 RGD:9685333, RGD:9685333 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012
JBrowse link
G Myh10 myosin heavy chain 10 involved_in IDA
IMP
PMID:20797537 SynGO PMID:20797537 PMID:20797537 RGD:12050124, RGD:12050124 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:21423166) RGD PMID:21423166 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 involved_in IMP
IDA
PMID:15721239 SynGO PMID:15721239 PMID:15721239 RGD:12050147, RGD:12050147 NCBI chr11:29,031,347...29,380,153
Ensembl chr11:29,031,348...29,159,901
JBrowse link
regulation of modification of postsynaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Camkv CaM kinase-like vesicle-associated involved_in IEA
ISO
GO_REF:0000107
(MGI:5905931|PMID:27796283)
Ensembl
RGD
PMID:27796283 GO_REF:0000107 MGI:5905931 NCBI chr 8:108,626,821...108,641,169
Ensembl chr 8:108,626,821...108,641,169
JBrowse link
G Cdc42 cell division cycle 42 involved_in IMP PMID:21423166 SynGO PMID:21423166 RGD:5688281 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IMP
IDA
PMID:25698751 SynGO PMID:25698751 PMID:25698751 RGD:13702150, RGD:13702150 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in IMP
IDA
PMID:23864697 SynGO PMID:23864697 PMID:23864697 RGD:13702314, RGD:13702314 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Myo5b myosin Vb involved_in IMP
IDA
PMID:18984164 SynGO PMID:18984164 PMID:18984164 RGD:11533643, RGD:11533643 NCBI chr18:68,038,759...68,341,568
Ensembl chr18:68,038,759...68,338,745
JBrowse link
regulation of modification of synaptic structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IGI
ISO
PMID:24658113
ComplexPortal:CPX-1134|UniProtKB:Q03137 (MGI:5588508|PMID:24658113)
RGD PMID:24658113 PMID:24658113 MGI:5588508, RGD:12911004 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:6256925|PMID:29780879) RGD PMID:29780879 MGI:6256925 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Epha4 Eph receptor A4 involved_in IGI
ISO
PMID:24658113
ComplexPortal:CPX-1134|UniProtKB:P00520 (MGI:5588508|PMID:24658113)
RGD PMID:24658113 PMID:24658113 MGI:5588508, RGD:12911004 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO (MGI:3590387|PMID:16055059) RGD PMID:16055059 MGI:3590387 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Gripap1 GRIP1 associated protein 1 involved_in IMP
IBA
PMID:20098723
PMID:21873635
SynGO
GO_Central
PMID:20098723 PMID:21873635 RGD:12050105, RGD:13792537 NCBI chr  X:14,678,896...14,708,747
Ensembl chr  X:14,678,898...14,708,679
JBrowse link
G Rhoa ras homolog family member A involved_in IMP PMID:21423166 SynGO PMID:21423166 RGD:5688281 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cellular component organization or biogenesis 6620
        cellular component organization 6378
          cell junction organization 807
            synapse organization 516
              modification of synaptic structure 35
                modification of postsynaptic structure + 27
                modification of synaptic structure, modulating synaptic transmission 1
                regulation of modification of synaptic structure + 19
paths to the root