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ONTOLOGY REPORT - ANNOTATIONS


Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


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trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cspg5 chondroitin sulfate proteoglycan 5 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3583729|PMID:15848802)
GO_Central
SynGO
PMID:15848802 PMID:21873635 MGI:3583729 MGI:6201960 NCBI chr 9:110,243,783...110,262,576
Ensembl chr 9:110,243,783...110,262,576
JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor involved_in IMP (MGI:4457852|PMID:19448629) SynGO PMID:19448629 MGI:4457852 NCBI chr 2:109,674,700...109,727,043
Ensembl chr 2:109,674,700...109,727,007
JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1, soluble, alpha 1 involved_in IDA
IMP
(MGI:6092877|PMID:28782641) SynGO PMID:28782641 MGI:6092877 NCBI chr 3:82,092,427...82,145,946
Ensembl chr 3:82,092,427...82,145,789
JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 involved_in IMP
IDA
(MGI:5661287|PMID:24991961) SynGO PMID:24991961 MGI:5661287 NCBI chr13:58,806,472...59,133,970
Ensembl chr13:58,806,569...59,133,970
JBrowse link
G Plat plasminogen activator, tissue involved_in IMP (MGI:3615067|PMID:15486301) SynGO PMID:15486301 MGI:3615067 NCBI chr 8:22,757,722...22,782,848
Ensembl chr 8:22,757,727...22,782,844
JBrowse link
G Plg plasminogen involved_in IDA
IEP
IMP
(MGI:3615067|PMID:15486301) SynGO PMID:15486301 MGI:3615067 NCBI chr17:12,378,609...12,419,384
Ensembl chr17:12,378,608...12,419,385
JBrowse link
G Syt4 synaptotagmin IV involved_in IDA
IMP
EXP
(MGI:4457852|PMID:19448629) SynGO PMID:19448629 MGI:4457852 NCBI chr18:31,437,808...31,447,415
Ensembl chr18:31,437,808...31,447,406
JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 (brain) involved_in IMP (MGI:5819353|PMID:16540577) SynGO PMID:16540577 MGI:5819353 NCBI chr 4:33,923,171...33,948,831
Ensembl chr 4:33,924,593...33,948,831
JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in IMP (MGI:5816443|PMID:21414931) ParkinsonsUK-UCL PMID:21414931 MGI:5816443 NCBI chr13:95,601,780...95,618,466
Ensembl chr13:95,601,803...95,618,487
JBrowse link
G Grm5 glutamate receptor, metabotropic 5 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 7:87,583,981...88,135,063
Ensembl chr 7:87,584,168...88,134,907
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in IDA
IMP
EXP
IEP
(MGI:5789683|PMID:27296803) SynGO PMID:27296803 MGI:5789683 NCBI chr 7:97,788,541...97,912,381
Ensembl chr 7:97,788,541...97,912,381
JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5661287|PMID:24991961)
GO_Central
SynGO
PMID:21873635 PMID:24991961 MGI:5661287 MGI:6201960 NCBI chr13:58,806,472...59,133,970
Ensembl chr13:58,806,569...59,133,970
JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1, soluble, beta 1 involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5609454|PMID:25413364)
GO_Central
SynGO
PMID:21873635 PMID:25413364 MGI:5609454 MGI:6201960 NCBI chr 3:82,032,004...82,074,711
Ensembl chr 3:82,032,006...82,074,689
JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 involved_in IMP
IDA
(MGI:3620453|PMID:16571754) SynGO PMID:16571754 MGI:3620453 NCBI chr11:69,554,092...69,561,150
Ensembl chr11:69,554,092...69,560,205
JBrowse link
G Ephb2 Eph receptor B2 involved_in IMP (MGI:5819355|PMID:12052960) SynGO PMID:12052960 MGI:5819355 NCBI chr 4:136,647,536...136,836,326
Ensembl chr 4:136,647,539...136,835,988
JBrowse link
G Nptn neuroplastin involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 9:58,582,240...58,652,879
Ensembl chr 9:58,582,240...58,657,955
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28616
    signaling 7135
      cell-cell signaling 1778
        synaptic signaling 948
          trans-synaptic signaling 916
            trans-synaptic signaling, modulating synaptic transmission 15
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
              trans-synaptic signaling by lipid, modulating synaptic transmission + 4
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 28616
    cellular process 17619
      cell communication 7222
        cell-cell signaling 1778
          synaptic signaling 948
            trans-synaptic signaling 916
              anterograde trans-synaptic signaling 907
                chemical synaptic transmission 907
                  trans-synaptic signaling, modulating synaptic transmission 15
                    trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
                    trans-synaptic signaling by lipid, modulating synaptic transmission + 4
                    trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                    trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                    trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root