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ONTOLOGY REPORT - ANNOTATIONS

Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


show annotations for term's descendants           Sort by:
trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBLN1 cerebellin 1 precursor involved_in ISO (PMID:36205393) SynGO PMID:36205393 NCBI chr16:49,277,917...49,281,838
Ensembl chr16:49,277,917...49,281,838 		JBrowse link
G CBLN2 cerebellin 2 precursor involved_in ISO (PMID:29784783), (PMID:36205393)
(PMID:36205393)		 SynGO PMID:29784783 PMID:36205393 NCBI chr18:72,536,681...72,638,521
Ensembl chr18:72,536,680...72,638,521 		JBrowse link
G CBLN4 cerebellin 4 precursor involved_in ISO (PMID:35544694) SynGO PMID:35544694 NCBI chr20:55,997,357...56,005,519
Ensembl chr20:55,997,357...56,005,519 		JBrowse link
G IGSF21 immunoglobin superfamily member 21 involved_in ISO (PMID:28864826) SynGO PMID:28864826 NCBI chr 1:18,107,798...18,378,483
Ensembl chr 1:18,107,798...18,378,483 		JBrowse link
G NEO1 neogenin 1 involved_in ISO (PMID:35544694) SynGO PMID:35544694 NCBI chr15:73,051,692...73,305,206
Ensembl chr15:73,051,710...73,305,205 		JBrowse link
G NRXN1 neurexin 1 involved_in ISO (PMID:36205393) SynGO PMID:36205393 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575 		JBrowse link
G NRXN3 neurexin 3 involved_in ISO (PMID:36205393) SynGO PMID:36205393 NCBI chr14:78,170,373...79,868,291
Ensembl chr14:78,170,373...79,868,291 		JBrowse link
regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLITRK5 SLIT and NTRK like family member 5 involved_in ISO (PMID:26004511) SynGO PMID:26004511 NCBI chr13:87,671,371...87,679,616
Ensembl chr13:87,671,371...87,696,272 		JBrowse link
G SYT4 synaptotagmin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:43,267,892...43,277,490
Ensembl chr18:43,267,892...43,277,535 		JBrowse link
regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNRIP1 cannabinoid receptor interacting protein 1 involved_in ISO (PMID:25772509) SynGO PMID:25772509 NCBI chr 2:68,284,171...68,319,949
Ensembl chr 2:68,284,171...68,320,051 		JBrowse link
G FAAH fatty acid amide hydrolase involved_in ISO (PMID:30532004) SynGO PMID:30532004 NCBI chr 1:46,394,317...46,413,845
Ensembl chr 1:46,394,317...46,413,848 		JBrowse link
G NRXN1 neurexin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575 		JBrowse link
G PAK1 p21 (RAC1) activated kinase 1 involved_in ISO (PMID:27296803) SynGO PMID:27296803 NCBI chr11:77,322,017...77,530,009
Ensembl chr11:77,322,017...77,474,635 		JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor involved_in ISO (MGI:4457852|PMID:19448629) SynGO PMID:19448629 MGI:4457852 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058 		JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUCY1A1 guanylate cyclase 1 soluble subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:155,666,848...155,737,059
Ensembl chr 4:155,666,726...155,737,059 		JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor involved_in ISO (PMID:19448629) SynGO PMID:19448629 NCBI chr11:27,654,893...27,722,030
Ensembl chr11:27,654,893...27,722,058 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,668,522...85,027,054
Ensembl chr 9:84,668,375...85,095,751 		JBrowse link
G PLAT plasminogen activator, tissue type involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,174,718...42,207,565
Ensembl chr 8:42,174,718...42,207,709 		JBrowse link
G PLG plasminogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:160,702,193...160,754,097
Ensembl chr 6:160,702,194...160,754,097 		JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNR1 cannabinoid receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:88,139,864...88,167,349
Ensembl chr 6:88,139,864...88,166,347 		JBrowse link
G CNR2 cannabinoid receptor 2 involved_in ISO (PMID:27133464) SynGO PMID:27133464 NCBI chr 1:23,870,515...23,913,362
Ensembl chr 1:23,870,515...23,913,362 		JBrowse link
G F2R coagulation factor II thrombin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,716,126...76,735,770
Ensembl chr 5:76,716,126...76,735,770 		JBrowse link
G GRM5 glutamate metabotropic receptor 5 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:88,504,642...89,065,982
Ensembl chr11:88,504,576...89,065,982 		JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:84,668,522...85,027,054
Ensembl chr 9:84,668,375...85,095,751 		JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUCY1B1 guanylate cyclase 1 soluble subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:155,759,021...155,807,811
Ensembl chr 4:155,758,992...155,807,811 		JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EFNB3 ephrin B3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,705,202...7,711,372
Ensembl chr17:7,705,202...7,711,372 		JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:22,710,838...22,921,500
Ensembl chr 1:22,710,839...22,921,500 		JBrowse link
G NPTN neuroplastin involved_in ISO PMID:10759566 SynGO PMID:10759566 RGD:8553916 NCBI chr15:73,560,014...73,633,389
Ensembl chr15:73,560,014...73,634,134 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    regulation of biological process 13030
      regulation of signaling 4055
        regulation of trans-synaptic signaling 772
          modulation of chemical synaptic transmission 771
            trans-synaptic signaling, modulating synaptic transmission 25
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
              trans-synaptic signaling by lipid, modulating synaptic transmission + 8
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 19770
    biological regulation 13405
      regulation of biological process 13030
        signaling 7211
          cell-cell signaling 1712
            synaptic signaling 1100
              trans-synaptic signaling 1063
                anterograde trans-synaptic signaling 1055
                  chemical synaptic transmission 1055
                    modulation of chemical synaptic transmission 771
                      trans-synaptic signaling, modulating synaptic transmission 25
                        trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
                        trans-synaptic signaling by lipid, modulating synaptic transmission + 8
                        trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                        trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                        trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root